Experiment: R2A with 3-octanone 15.9309 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS01320 and ABIE40_RS01325 are separated by 117 nucleotides ABIE40_RS01325 and ABIE40_RS01330 are separated by 140 nucleotides
ABIE40_RS01320: ABIE40_RS01320 - undecaprenyl-diphosphate phosphatase, at 260,956 to 261,753
_RS01320
ABIE40_RS01325: ABIE40_RS01325 - hypothetical protein, at 261,871 to 262,167
_RS01325
ABIE40_RS01330: ABIE40_RS01330 - complex I NDUFA9 subunit family protein, at 262,308 to 263,288
_RS01330
Position (kb) 261
262
263 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 261.733 kb on + strand at 261.733 kb on + strand at 261.733 kb on + strand at 261.734 kb on - strand at 261.734 kb on - strand at 261.872 kb on + strand at 261.872 kb on + strand at 261.873 kb on - strand at 261.873 kb on - strand at 261.873 kb on - strand at 261.873 kb on - strand at 261.912 kb on - strand, within ABIE40_RS01325 at 261.934 kb on - strand, within ABIE40_RS01325 at 261.934 kb on - strand, within ABIE40_RS01325 at 261.979 kb on - strand, within ABIE40_RS01325 at 262.028 kb on - strand, within ABIE40_RS01325 at 262.029 kb on + strand, within ABIE40_RS01325 at 262.029 kb on + strand, within ABIE40_RS01325 at 262.029 kb on + strand, within ABIE40_RS01325 at 262.030 kb on - strand, within ABIE40_RS01325 at 262.030 kb on - strand, within ABIE40_RS01325 at 262.097 kb on + strand, within ABIE40_RS01325 at 262.097 kb on + strand, within ABIE40_RS01325 at 262.098 kb on - strand, within ABIE40_RS01325 at 262.116 kb on + strand, within ABIE40_RS01325 at 262.116 kb on + strand, within ABIE40_RS01325 at 262.116 kb on + strand, within ABIE40_RS01325 at 262.117 kb on - strand, within ABIE40_RS01325 at 262.122 kb on + strand, within ABIE40_RS01325 at 262.123 kb on - strand, within ABIE40_RS01325 at 262.123 kb on - strand, within ABIE40_RS01325 at 262.156 kb on + strand at 262.176 kb on + strand at 262.177 kb on - strand at 262.177 kb on - strand at 262.291 kb on + strand at 262.292 kb on - strand at 262.292 kb on - strand at 262.297 kb on + strand at 262.334 kb on - strand at 262.334 kb on - strand at 262.352 kb on - strand at 262.352 kb on - strand at 262.363 kb on + strand at 262.363 kb on + strand at 262.363 kb on + strand at 262.364 kb on - strand at 262.364 kb on - strand at 262.459 kb on + strand, within ABIE40_RS01330 at 262.460 kb on - strand, within ABIE40_RS01330 at 262.460 kb on - strand, within ABIE40_RS01330 at 262.645 kb on + strand, within ABIE40_RS01330 at 262.645 kb on + strand, within ABIE40_RS01330 at 262.646 kb on - strand, within ABIE40_RS01330 at 262.711 kb on + strand, within ABIE40_RS01330 at 262.712 kb on - strand, within ABIE40_RS01330 at 262.860 kb on + strand, within ABIE40_RS01330 at 262.860 kb on + strand, within ABIE40_RS01330 at 262.894 kb on + strand, within ABIE40_RS01330 at 262.894 kb on + strand, within ABIE40_RS01330 at 262.894 kb on + strand, within ABIE40_RS01330 at 262.894 kb on + strand, within ABIE40_RS01330 at 262.894 kb on + strand, within ABIE40_RS01330 at 262.894 kb on + strand, within ABIE40_RS01330 at 262.895 kb on - strand, within ABIE40_RS01330 at 262.895 kb on - strand, within ABIE40_RS01330
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 15.9309 mM remove 261,733 + -1.2 261,733 + -0.0 261,733 + -0.5 261,734 - +3.1 261,734 - -1.0 261,872 + -2.3 261,872 + +2.0 261,873 - +0.9 261,873 - -0.2 261,873 - +0.2 261,873 - +0.3 261,912 - ABIE40_RS01325 0.14 -1.8 261,934 - ABIE40_RS01325 0.21 +0.2 261,934 - ABIE40_RS01325 0.21 -2.4 261,979 - ABIE40_RS01325 0.36 +1.9 262,028 - ABIE40_RS01325 0.53 -1.7 262,029 + ABIE40_RS01325 0.53 -2.1 262,029 + ABIE40_RS01325 0.53 +0.2 262,029 + ABIE40_RS01325 0.53 -1.7 262,030 - ABIE40_RS01325 0.54 -1.6 262,030 - ABIE40_RS01325 0.54 -1.0 262,097 + ABIE40_RS01325 0.76 -2.7 262,097 + ABIE40_RS01325 0.76 -1.4 262,098 - ABIE40_RS01325 0.76 -0.4 262,116 + ABIE40_RS01325 0.82 -1.4 262,116 + ABIE40_RS01325 0.82 -4.4 262,116 + ABIE40_RS01325 0.82 -1.3 262,117 - ABIE40_RS01325 0.83 -2.6 262,122 + ABIE40_RS01325 0.85 -1.9 262,123 - ABIE40_RS01325 0.85 -0.1 262,123 - ABIE40_RS01325 0.85 -0.2 262,156 + -0.1 262,176 + -0.6 262,177 - -0.7 262,177 - -0.7 262,291 + -2.3 262,292 - -0.1 262,292 - +0.2 262,297 + +1.0 262,334 - +1.1 262,334 - -0.3 262,352 - -1.3 262,352 - -0.1 262,363 + -2.2 262,363 + -0.8 262,363 + -0.5 262,364 - +0.5 262,364 - +0.0 262,459 + ABIE40_RS01330 0.15 +1.1 262,460 - ABIE40_RS01330 0.15 -0.6 262,460 - ABIE40_RS01330 0.15 -1.1 262,645 + ABIE40_RS01330 0.34 -2.8 262,645 + ABIE40_RS01330 0.34 -1.4 262,646 - ABIE40_RS01330 0.34 -0.2 262,711 + ABIE40_RS01330 0.41 -0.8 262,712 - ABIE40_RS01330 0.41 -0.7 262,860 + ABIE40_RS01330 0.56 -2.9 262,860 + ABIE40_RS01330 0.56 -1.9 262,894 + ABIE40_RS01330 0.60 -0.8 262,894 + ABIE40_RS01330 0.60 -1.9 262,894 + ABIE40_RS01330 0.60 -2.5 262,894 + ABIE40_RS01330 0.60 +0.2 262,894 + ABIE40_RS01330 0.60 -0.2 262,894 + ABIE40_RS01330 0.60 -1.7 262,895 - ABIE40_RS01330 0.60 +0.2 262,895 - ABIE40_RS01330 0.60 -0.2
Or see this region's nucleotide sequence