Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS19785

Experiment: R2A with 3-octanone 10.6206 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS19780 and ABIE40_RS19785 overlap by 4 nucleotidesABIE40_RS19785 and ABIE40_RS19790 are separated by 182 nucleotides ABIE40_RS19780: ABIE40_RS19780 - glycosyltransferase family 4 protein, at 54,658 to 55,905 _RS19780 ABIE40_RS19785: ABIE40_RS19785 - glycosyltransferase, at 55,902 to 57,035 _RS19785 ABIE40_RS19790: ABIE40_RS19790 - ABC transporter transmembrane domain-containing protein, at 57,218 to 59,932 _RS19790 Position (kb) 55 56 57 58Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 54.960 kb on + strand, within ABIE40_RS19780at 54.960 kb on + strand, within ABIE40_RS19780at 54.961 kb on - strand, within ABIE40_RS19780at 54.961 kb on - strand, within ABIE40_RS19780at 54.998 kb on + strand, within ABIE40_RS19780at 54.998 kb on + strand, within ABIE40_RS19780at 55.078 kb on + strand, within ABIE40_RS19780at 55.079 kb on - strand, within ABIE40_RS19780at 55.131 kb on + strand, within ABIE40_RS19780at 55.218 kb on + strand, within ABIE40_RS19780at 55.218 kb on + strand, within ABIE40_RS19780at 55.218 kb on + strand, within ABIE40_RS19780at 55.218 kb on + strand, within ABIE40_RS19780at 55.218 kb on + strand, within ABIE40_RS19780at 55.219 kb on - strand, within ABIE40_RS19780at 55.219 kb on - strand, within ABIE40_RS19780at 55.261 kb on + strand, within ABIE40_RS19780at 55.261 kb on + strand, within ABIE40_RS19780at 55.261 kb on + strand, within ABIE40_RS19780at 55.261 kb on + strand, within ABIE40_RS19780at 55.513 kb on - strand, within ABIE40_RS19780at 55.678 kb on - strand, within ABIE40_RS19780at 55.926 kb on + strandat 55.926 kb on + strandat 55.927 kb on - strandat 56.478 kb on + strand, within ABIE40_RS19785at 56.478 kb on + strand, within ABIE40_RS19785at 56.479 kb on - strand, within ABIE40_RS19785at 56.479 kb on - strand, within ABIE40_RS19785at 56.479 kb on - strand, within ABIE40_RS19785at 56.479 kb on - strand, within ABIE40_RS19785at 56.480 kb on + strand, within ABIE40_RS19785at 56.481 kb on - strand, within ABIE40_RS19785at 56.481 kb on - strand, within ABIE40_RS19785at 56.487 kb on - strand, within ABIE40_RS19785at 56.769 kb on + strand, within ABIE40_RS19785at 56.769 kb on + strand, within ABIE40_RS19785at 56.769 kb on + strand, within ABIE40_RS19785at 56.769 kb on + strand, within ABIE40_RS19785at 56.770 kb on - strand, within ABIE40_RS19785at 56.770 kb on - strand, within ABIE40_RS19785at 56.770 kb on - strand, within ABIE40_RS19785at 56.771 kb on + strand, within ABIE40_RS19785at 56.771 kb on + strand, within ABIE40_RS19785at 56.772 kb on - strand, within ABIE40_RS19785at 56.772 kb on - strand, within ABIE40_RS19785at 56.772 kb on - strand, within ABIE40_RS19785at 56.772 kb on - strand, within ABIE40_RS19785at 57.065 kb on + strandat 57.065 kb on + strandat 57.067 kb on + strandat 57.239 kb on + strandat 57.241 kb on + strandat 57.241 kb on + strandat 57.241 kb on + strandat 57.241 kb on + strandat 57.241 kb on + strandat 57.241 kb on + strandat 57.242 kb on - strandat 57.242 kb on - strandat 57.242 kb on - strandat 57.243 kb on + strandat 57.308 kb on + strandat 57.309 kb on - strandat 57.495 kb on + strand, within ABIE40_RS19790at 57.495 kb on + strand, within ABIE40_RS19790at 57.496 kb on - strand, within ABIE40_RS19790at 57.536 kb on + strand, within ABIE40_RS19790at 57.536 kb on + strand, within ABIE40_RS19790at 57.537 kb on - strand, within ABIE40_RS19790at 57.537 kb on - strand, within ABIE40_RS19790at 57.548 kb on + strand, within ABIE40_RS19790at 57.548 kb on + strand, within ABIE40_RS19790at 57.549 kb on - strand, within ABIE40_RS19790at 57.549 kb on - strand, within ABIE40_RS19790at 57.549 kb on - strand, within ABIE40_RS19790at 57.644 kb on - strand, within ABIE40_RS19790at 57.949 kb on + strand, within ABIE40_RS19790at 57.949 kb on + strand, within ABIE40_RS19790at 57.949 kb on + strand, within ABIE40_RS19790at 58.019 kb on + strand, within ABIE40_RS19790at 58.020 kb on - strand, within ABIE40_RS19790

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 10.6206 mM
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54,960 + ABIE40_RS19780 0.24 -1.5
54,960 + ABIE40_RS19780 0.24 -0.9
54,961 - ABIE40_RS19780 0.24 +0.3
54,961 - ABIE40_RS19780 0.24 -2.1
54,998 + ABIE40_RS19780 0.27 -0.8
54,998 + ABIE40_RS19780 0.27 -1.1
55,078 + ABIE40_RS19780 0.34 -1.0
55,079 - ABIE40_RS19780 0.34 -3.2
55,131 + ABIE40_RS19780 0.38 +0.1
55,218 + ABIE40_RS19780 0.45 +0.1
55,218 + ABIE40_RS19780 0.45 -1.2
55,218 + ABIE40_RS19780 0.45 -1.9
55,218 + ABIE40_RS19780 0.45 -0.5
55,218 + ABIE40_RS19780 0.45 -0.5
55,219 - ABIE40_RS19780 0.45 -0.9
55,219 - ABIE40_RS19780 0.45 +1.9
55,261 + ABIE40_RS19780 0.48 -2.2
55,261 + ABIE40_RS19780 0.48 -1.9
55,261 + ABIE40_RS19780 0.48 +0.6
55,261 + ABIE40_RS19780 0.48 -0.6
55,513 - ABIE40_RS19780 0.69 -2.2
55,678 - ABIE40_RS19780 0.82 -2.2
55,926 + -2.3
55,926 + -1.1
55,927 - -2.0
56,478 + ABIE40_RS19785 0.51 -1.9
56,478 + ABIE40_RS19785 0.51 -0.5
56,479 - ABIE40_RS19785 0.51 +0.3
56,479 - ABIE40_RS19785 0.51 +1.9
56,479 - ABIE40_RS19785 0.51 -0.8
56,479 - ABIE40_RS19785 0.51 +1.9
56,480 + ABIE40_RS19785 0.51 -0.6
56,481 - ABIE40_RS19785 0.51 -0.0
56,481 - ABIE40_RS19785 0.51 -0.7
56,487 - ABIE40_RS19785 0.52 -1.8
56,769 + ABIE40_RS19785 0.76 -0.1
56,769 + ABIE40_RS19785 0.76 -0.2
56,769 + ABIE40_RS19785 0.76 -1.2
56,769 + ABIE40_RS19785 0.76 -0.7
56,770 - ABIE40_RS19785 0.77 -1.8
56,770 - ABIE40_RS19785 0.77 +0.3
56,770 - ABIE40_RS19785 0.77 -1.2
56,771 + ABIE40_RS19785 0.77 -0.5
56,771 + ABIE40_RS19785 0.77 -1.5
56,772 - ABIE40_RS19785 0.77 -0.8
56,772 - ABIE40_RS19785 0.77 -2.2
56,772 - ABIE40_RS19785 0.77 +0.2
56,772 - ABIE40_RS19785 0.77 +0.9
57,065 + +0.9
57,065 + +1.1
57,067 + -1.8
57,239 + -2.1
57,241 + +0.1
57,241 + -0.3
57,241 + -1.5
57,241 + -0.4
57,241 + -1.8
57,241 + -0.8
57,242 - -1.9
57,242 - -1.6
57,242 - -1.0
57,243 + -0.0
57,308 + +1.9
57,309 - -1.8
57,495 + ABIE40_RS19790 0.10 -0.7
57,495 + ABIE40_RS19790 0.10 -0.5
57,496 - ABIE40_RS19790 0.10 -0.9
57,536 + ABIE40_RS19790 0.12 -0.6
57,536 + ABIE40_RS19790 0.12 -1.0
57,537 - ABIE40_RS19790 0.12 -2.2
57,537 - ABIE40_RS19790 0.12 +0.9
57,548 + ABIE40_RS19790 0.12 +0.2
57,548 + ABIE40_RS19790 0.12 -3.4
57,549 - ABIE40_RS19790 0.12 -2.0
57,549 - ABIE40_RS19790 0.12 +1.9
57,549 - ABIE40_RS19790 0.12 -1.5
57,644 - ABIE40_RS19790 0.16 -0.2
57,949 + ABIE40_RS19790 0.27 -1.0
57,949 + ABIE40_RS19790 0.27 +0.5
57,949 + ABIE40_RS19790 0.27 +1.5
58,019 + ABIE40_RS19790 0.30 -1.1
58,020 - ABIE40_RS19790 0.30 -0.9

Or see this region's nucleotide sequence