Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS09860

Experiment: R2A with 3-octanone 10.6206 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS09855 and ABIE40_RS09860 are separated by 122 nucleotidesABIE40_RS09860 and ABIE40_RS09865 are separated by 85 nucleotidesABIE40_RS09865 and ABIE40_RS09870 are separated by 4 nucleotidesABIE40_RS09870 and ABIE40_RS09875 are separated by 12 nucleotides ABIE40_RS09855: ABIE40_RS09855 - hypothetical protein, at 1,900,123 to 1,901,385 _RS09855 ABIE40_RS09860: ABIE40_RS09860 - S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase, at 1,901,508 to 1,902,635 _RS09860 ABIE40_RS09865: ABIE40_RS09865 - type II toxin-antitoxin system ParD family antitoxin, at 1,902,721 to 1,902,975 _RS09865 ABIE40_RS09870: ABIE40_RS09870 - type II toxin-antitoxin system RelE/ParE family toxin, at 1,902,980 to 1,903,276 _RS09870 ABIE40_RS09875: ABIE40_RS09875 - YaiI/YqxD family protein, at 1,903,289 to 1,903,756 _RS09875 Position (kb) 1901 1902 1903Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1900.588 kb on + strand, within ABIE40_RS09855at 1900.589 kb on - strand, within ABIE40_RS09855at 1900.589 kb on - strand, within ABIE40_RS09855at 1900.589 kb on - strand, within ABIE40_RS09855at 1900.811 kb on - strand, within ABIE40_RS09855at 1900.888 kb on + strand, within ABIE40_RS09855at 1900.889 kb on - strand, within ABIE40_RS09855at 1900.981 kb on - strand, within ABIE40_RS09855at 1901.166 kb on + strand, within ABIE40_RS09855at 1901.229 kb on + strand, within ABIE40_RS09855at 1901.326 kb on + strandat 1901.327 kb on - strandat 1901.494 kb on - strandat 1901.494 kb on - strandat 1901.631 kb on - strand, within ABIE40_RS09860at 1901.793 kb on + strand, within ABIE40_RS09860at 1901.793 kb on + strand, within ABIE40_RS09860at 1901.793 kb on + strand, within ABIE40_RS09860at 1901.794 kb on - strand, within ABIE40_RS09860at 1901.794 kb on - strand, within ABIE40_RS09860at 1901.794 kb on - strand, within ABIE40_RS09860at 1901.910 kb on + strand, within ABIE40_RS09860at 1901.910 kb on + strand, within ABIE40_RS09860at 1901.910 kb on + strand, within ABIE40_RS09860at 1901.910 kb on + strand, within ABIE40_RS09860at 1901.910 kb on + strand, within ABIE40_RS09860at 1901.910 kb on + strand, within ABIE40_RS09860at 1901.911 kb on - strand, within ABIE40_RS09860at 1901.911 kb on - strand, within ABIE40_RS09860at 1901.911 kb on - strand, within ABIE40_RS09860at 1901.911 kb on - strand, within ABIE40_RS09860at 1901.911 kb on - strand, within ABIE40_RS09860at 1901.911 kb on - strand, within ABIE40_RS09860at 1901.911 kb on - strand, within ABIE40_RS09860at 1901.911 kb on - strand, within ABIE40_RS09860at 1901.911 kb on - strand, within ABIE40_RS09860at 1901.911 kb on - strand, within ABIE40_RS09860at 1901.911 kb on - strand, within ABIE40_RS09860at 1902.004 kb on - strand, within ABIE40_RS09860at 1902.225 kb on + strand, within ABIE40_RS09860at 1902.239 kb on + strand, within ABIE40_RS09860at 1902.250 kb on - strand, within ABIE40_RS09860at 1902.250 kb on - strand, within ABIE40_RS09860at 1902.300 kb on + strand, within ABIE40_RS09860at 1902.301 kb on - strand, within ABIE40_RS09860at 1902.513 kb on + strand, within ABIE40_RS09860at 1902.513 kb on + strand, within ABIE40_RS09860at 1902.513 kb on + strand, within ABIE40_RS09860at 1902.513 kb on + strand, within ABIE40_RS09860at 1902.514 kb on - strand, within ABIE40_RS09860at 1902.514 kb on - strand, within ABIE40_RS09860at 1902.514 kb on - strand, within ABIE40_RS09860at 1902.514 kb on - strand, within ABIE40_RS09860at 1902.514 kb on - strand, within ABIE40_RS09860at 1902.628 kb on + strandat 1902.628 kb on + strandat 1902.628 kb on + strandat 1902.628 kb on + strandat 1902.628 kb on + strandat 1902.628 kb on + strandat 1902.629 kb on - strandat 1902.629 kb on - strandat 1902.629 kb on - strandat 1902.629 kb on - strandat 1902.630 kb on + strandat 1902.630 kb on + strandat 1902.630 kb on + strandat 1902.630 kb on + strandat 1902.630 kb on + strandat 1902.631 kb on - strandat 1902.631 kb on - strandat 1902.631 kb on - strandat 1902.631 kb on - strandat 1902.631 kb on - strandat 1902.631 kb on - strandat 1902.631 kb on - strandat 1902.631 kb on - strandat 1902.631 kb on - strandat 1902.631 kb on - strandat 1902.633 kb on + strandat 1902.633 kb on + strandat 1902.633 kb on + strandat 1902.633 kb on + strandat 1902.633 kb on + strandat 1902.634 kb on - strandat 1902.634 kb on - strandat 1902.686 kb on + strandat 1902.686 kb on + strandat 1902.686 kb on + strandat 1902.686 kb on + strandat 1902.687 kb on - strandat 1902.687 kb on - strandat 1902.687 kb on - strandat 1902.687 kb on - strandat 1902.687 kb on - strandat 1902.687 kb on - strandat 1902.699 kb on + strandat 1902.700 kb on - strandat 1902.740 kb on + strandat 1902.741 kb on - strandat 1902.747 kb on + strand, within ABIE40_RS09865at 1902.747 kb on + strand, within ABIE40_RS09865at 1902.747 kb on + strand, within ABIE40_RS09865at 1902.747 kb on + strand, within ABIE40_RS09865at 1902.747 kb on + strand, within ABIE40_RS09865at 1902.747 kb on + strand, within ABIE40_RS09865at 1902.748 kb on - strand, within ABIE40_RS09865at 1902.748 kb on - strand, within ABIE40_RS09865at 1902.942 kb on + strand, within ABIE40_RS09865at 1902.942 kb on + strand, within ABIE40_RS09865at 1902.942 kb on + strand, within ABIE40_RS09865at 1902.943 kb on - strand, within ABIE40_RS09865at 1902.943 kb on - strand, within ABIE40_RS09865at 1902.943 kb on - strand, within ABIE40_RS09865at 1902.943 kb on - strand, within ABIE40_RS09865at 1902.943 kb on - strand, within ABIE40_RS09865at 1902.977 kb on + strandat 1902.977 kb on + strandat 1902.978 kb on - strandat 1902.978 kb on - strandat 1902.978 kb on - strandat 1903.022 kb on + strand, within ABIE40_RS09870at 1903.022 kb on + strand, within ABIE40_RS09870at 1903.023 kb on - strand, within ABIE40_RS09870at 1903.027 kb on + strand, within ABIE40_RS09870at 1903.027 kb on + strand, within ABIE40_RS09870at 1903.027 kb on + strand, within ABIE40_RS09870at 1903.027 kb on + strand, within ABIE40_RS09870at 1903.028 kb on - strand, within ABIE40_RS09870at 1903.028 kb on - strand, within ABIE40_RS09870at 1903.104 kb on + strand, within ABIE40_RS09870at 1903.104 kb on + strand, within ABIE40_RS09870at 1903.105 kb on - strand, within ABIE40_RS09870at 1903.181 kb on + strand, within ABIE40_RS09870at 1903.181 kb on + strand, within ABIE40_RS09870at 1903.181 kb on + strand, within ABIE40_RS09870at 1903.181 kb on + strand, within ABIE40_RS09870at 1903.181 kb on + strand, within ABIE40_RS09870at 1903.182 kb on - strand, within ABIE40_RS09870at 1903.182 kb on - strand, within ABIE40_RS09870at 1903.182 kb on - strand, within ABIE40_RS09870at 1903.190 kb on + strand, within ABIE40_RS09870at 1903.191 kb on - strand, within ABIE40_RS09870at 1903.191 kb on - strand, within ABIE40_RS09870at 1903.191 kb on - strand, within ABIE40_RS09870at 1903.253 kb on + strandat 1903.253 kb on + strandat 1903.253 kb on + strandat 1903.262 kb on + strandat 1903.263 kb on - strandat 1903.275 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 10.6206 mM
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1,900,588 + ABIE40_RS09855 0.37 +0.1
1,900,589 - ABIE40_RS09855 0.37 -0.4
1,900,589 - ABIE40_RS09855 0.37 -0.9
1,900,589 - ABIE40_RS09855 0.37 -1.3
1,900,811 - ABIE40_RS09855 0.54 +0.1
1,900,888 + ABIE40_RS09855 0.61 +0.6
1,900,889 - ABIE40_RS09855 0.61 -0.6
1,900,981 - ABIE40_RS09855 0.68 +0.6
1,901,166 + ABIE40_RS09855 0.83 +1.4
1,901,229 + ABIE40_RS09855 0.88 -1.6
1,901,326 + -1.2
1,901,327 - +1.2
1,901,494 - -2.3
1,901,494 - +0.1
1,901,631 - ABIE40_RS09860 0.11 -2.0
1,901,793 + ABIE40_RS09860 0.25 +0.6
1,901,793 + ABIE40_RS09860 0.25 -2.1
1,901,793 + ABIE40_RS09860 0.25 -0.4
1,901,794 - ABIE40_RS09860 0.25 +0.4
1,901,794 - ABIE40_RS09860 0.25 +0.4
1,901,794 - ABIE40_RS09860 0.25 -1.0
1,901,910 + ABIE40_RS09860 0.36 -0.7
1,901,910 + ABIE40_RS09860 0.36 -0.5
1,901,910 + ABIE40_RS09860 0.36 -0.7
1,901,910 + ABIE40_RS09860 0.36 -0.3
1,901,910 + ABIE40_RS09860 0.36 -2.0
1,901,910 + ABIE40_RS09860 0.36 -0.9
1,901,911 - ABIE40_RS09860 0.36 +1.5
1,901,911 - ABIE40_RS09860 0.36 +0.5
1,901,911 - ABIE40_RS09860 0.36 +0.5
1,901,911 - ABIE40_RS09860 0.36 -0.0
1,901,911 - ABIE40_RS09860 0.36 +0.6
1,901,911 - ABIE40_RS09860 0.36 +0.0
1,901,911 - ABIE40_RS09860 0.36 +2.0
1,901,911 - ABIE40_RS09860 0.36 -3.2
1,901,911 - ABIE40_RS09860 0.36 -0.0
1,901,911 - ABIE40_RS09860 0.36 +0.4
1,901,911 - ABIE40_RS09860 0.36 +1.0
1,902,004 - ABIE40_RS09860 0.44 -1.4
1,902,225 + ABIE40_RS09860 0.64 +1.1
1,902,239 + ABIE40_RS09860 0.65 +0.5
1,902,250 - ABIE40_RS09860 0.66 -0.4
1,902,250 - ABIE40_RS09860 0.66 +1.1
1,902,300 + ABIE40_RS09860 0.70 -1.2
1,902,301 - ABIE40_RS09860 0.70 -0.5
1,902,513 + ABIE40_RS09860 0.89 +0.4
1,902,513 + ABIE40_RS09860 0.89 -0.6
1,902,513 + ABIE40_RS09860 0.89 -0.2
1,902,513 + ABIE40_RS09860 0.89 -0.8
1,902,514 - ABIE40_RS09860 0.89 +0.4
1,902,514 - ABIE40_RS09860 0.89 -0.2
1,902,514 - ABIE40_RS09860 0.89 -0.5
1,902,514 - ABIE40_RS09860 0.89 -0.4
1,902,514 - ABIE40_RS09860 0.89 +0.3
1,902,628 + +0.7
1,902,628 + +0.9
1,902,628 + +1.6
1,902,628 + +1.2
1,902,628 + -0.3
1,902,628 + -1.8
1,902,629 - +0.7
1,902,629 - -0.3
1,902,629 - +0.4
1,902,629 - -1.0
1,902,630 + +1.0
1,902,630 + +0.4
1,902,630 + +0.8
1,902,630 + +1.6
1,902,630 + -0.8
1,902,631 - -2.4
1,902,631 - +0.0
1,902,631 - +0.4
1,902,631 - -1.2
1,902,631 - -0.5
1,902,631 - +0.1
1,902,631 - -0.7
1,902,631 - -0.4
1,902,631 - +0.0
1,902,631 - +0.5
1,902,633 + +0.4
1,902,633 + +1.6
1,902,633 + -0.2
1,902,633 + +0.8
1,902,633 + +1.2
1,902,634 - -1.0
1,902,634 - +1.5
1,902,686 + -2.0
1,902,686 + +1.2
1,902,686 + +1.7
1,902,686 + +0.2
1,902,687 - +0.5
1,902,687 - -0.2
1,902,687 - +0.1
1,902,687 - +0.4
1,902,687 - -2.0
1,902,687 - +0.4
1,902,699 + +0.0
1,902,700 - -1.3
1,902,740 + +0.3
1,902,741 - +0.3
1,902,747 + ABIE40_RS09865 0.10 +0.4
1,902,747 + ABIE40_RS09865 0.10 +0.5
1,902,747 + ABIE40_RS09865 0.10 +0.5
1,902,747 + ABIE40_RS09865 0.10 +1.0
1,902,747 + ABIE40_RS09865 0.10 -0.0
1,902,747 + ABIE40_RS09865 0.10 -0.5
1,902,748 - ABIE40_RS09865 0.11 +1.8
1,902,748 - ABIE40_RS09865 0.11 -1.5
1,902,942 + ABIE40_RS09865 0.87 -1.1
1,902,942 + ABIE40_RS09865 0.87 -1.5
1,902,942 + ABIE40_RS09865 0.87 -0.1
1,902,943 - ABIE40_RS09865 0.87 +0.6
1,902,943 - ABIE40_RS09865 0.87 +0.4
1,902,943 - ABIE40_RS09865 0.87 -1.7
1,902,943 - ABIE40_RS09865 0.87 -0.4
1,902,943 - ABIE40_RS09865 0.87 -1.4
1,902,977 + -0.9
1,902,977 + +1.5
1,902,978 - +2.7
1,902,978 - -0.4
1,902,978 - -0.7
1,903,022 + ABIE40_RS09870 0.14 -1.2
1,903,022 + ABIE40_RS09870 0.14 -1.1
1,903,023 - ABIE40_RS09870 0.14 +0.4
1,903,027 + ABIE40_RS09870 0.16 -0.7
1,903,027 + ABIE40_RS09870 0.16 -0.3
1,903,027 + ABIE40_RS09870 0.16 -0.4
1,903,027 + ABIE40_RS09870 0.16 -2.7
1,903,028 - ABIE40_RS09870 0.16 -1.9
1,903,028 - ABIE40_RS09870 0.16 -1.6
1,903,104 + ABIE40_RS09870 0.42 +0.4
1,903,104 + ABIE40_RS09870 0.42 +0.0
1,903,105 - ABIE40_RS09870 0.42 -1.0
1,903,181 + ABIE40_RS09870 0.68 -0.0
1,903,181 + ABIE40_RS09870 0.68 -0.9
1,903,181 + ABIE40_RS09870 0.68 -2.5
1,903,181 + ABIE40_RS09870 0.68 +0.1
1,903,181 + ABIE40_RS09870 0.68 +0.6
1,903,182 - ABIE40_RS09870 0.68 -1.6
1,903,182 - ABIE40_RS09870 0.68 -1.6
1,903,182 - ABIE40_RS09870 0.68 +1.5
1,903,190 + ABIE40_RS09870 0.71 +0.2
1,903,191 - ABIE40_RS09870 0.71 -1.2
1,903,191 - ABIE40_RS09870 0.71 +1.5
1,903,191 - ABIE40_RS09870 0.71 +1.6
1,903,253 + +0.7
1,903,253 + -1.2
1,903,253 + -0.2
1,903,262 + -0.7
1,903,263 - +2.0
1,903,275 - -0.4

Or see this region's nucleotide sequence