Experiment: R2A with 3-octanone 10.6206 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS29275 and ABIE40_RS29280 are separated by 487 nucleotides ABIE40_RS29280 and ABIE40_RS29285 are separated by 71 nucleotides
ABIE40_RS29275: ABIE40_RS29275 - TerC family protein, at 552,360 to 553,340
_RS29275
ABIE40_RS29280: ABIE40_RS29280 - tryptophan synthase subunit beta, at 553,828 to 555,036
_RS29280
ABIE40_RS29285: ABIE40_RS29285 - AarF/ABC1/UbiB kinase family protein, at 555,108 to 556,433
_RS29285
Position (kb) 553
554
555
556 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 552.846 kb on - strand, within ABIE40_RS29275 at 552.850 kb on + strand, within ABIE40_RS29275 at 552.851 kb on - strand, within ABIE40_RS29275 at 552.899 kb on + strand, within ABIE40_RS29275 at 552.900 kb on - strand, within ABIE40_RS29275 at 553.025 kb on - strand, within ABIE40_RS29275 at 553.025 kb on - strand, within ABIE40_RS29275 at 553.080 kb on - strand, within ABIE40_RS29275 at 553.099 kb on + strand, within ABIE40_RS29275 at 553.099 kb on + strand, within ABIE40_RS29275 at 553.099 kb on + strand, within ABIE40_RS29275 at 553.099 kb on + strand, within ABIE40_RS29275 at 553.100 kb on - strand, within ABIE40_RS29275 at 553.128 kb on + strand, within ABIE40_RS29275 at 553.129 kb on - strand, within ABIE40_RS29275 at 553.129 kb on - strand, within ABIE40_RS29275 at 553.129 kb on - strand, within ABIE40_RS29275 at 553.196 kb on - strand, within ABIE40_RS29275 at 553.259 kb on - strand at 553.259 kb on - strand at 553.338 kb on + strand at 553.362 kb on + strand at 553.362 kb on + strand at 553.362 kb on + strand at 553.434 kb on - strand at 553.434 kb on - strand at 553.434 kb on - strand at 553.477 kb on + strand at 553.478 kb on - strand at 553.485 kb on + strand at 553.485 kb on + strand at 553.486 kb on - strand at 553.486 kb on - strand at 553.488 kb on - strand at 553.538 kb on + strand at 553.539 kb on - strand at 553.560 kb on + strand at 553.560 kb on + strand at 553.561 kb on - strand at 553.634 kb on + strand at 553.813 kb on + strand at 553.822 kb on + strand at 553.823 kb on - strand at 553.829 kb on + strand at 553.870 kb on - strand at 553.897 kb on + strand at 553.990 kb on - strand, within ABIE40_RS29280 at 554.129 kb on - strand, within ABIE40_RS29280 at 554.156 kb on + strand, within ABIE40_RS29280 at 554.332 kb on + strand, within ABIE40_RS29280 at 554.332 kb on + strand, within ABIE40_RS29280 at 554.333 kb on - strand, within ABIE40_RS29280 at 554.333 kb on - strand, within ABIE40_RS29280 at 554.359 kb on + strand, within ABIE40_RS29280 at 554.359 kb on + strand, within ABIE40_RS29280 at 554.453 kb on + strand, within ABIE40_RS29280 at 554.453 kb on + strand, within ABIE40_RS29280 at 554.453 kb on + strand, within ABIE40_RS29280 at 554.453 kb on + strand, within ABIE40_RS29280 at 554.454 kb on - strand, within ABIE40_RS29280 at 554.456 kb on + strand, within ABIE40_RS29280 at 554.456 kb on + strand, within ABIE40_RS29280 at 554.456 kb on + strand, within ABIE40_RS29280 at 554.456 kb on + strand, within ABIE40_RS29280 at 554.457 kb on - strand, within ABIE40_RS29280 at 554.457 kb on - strand, within ABIE40_RS29280 at 554.457 kb on - strand, within ABIE40_RS29280 at 554.457 kb on - strand, within ABIE40_RS29280 at 554.457 kb on - strand, within ABIE40_RS29280 at 554.457 kb on - strand, within ABIE40_RS29280 at 554.502 kb on + strand, within ABIE40_RS29280 at 554.503 kb on - strand, within ABIE40_RS29280 at 554.612 kb on + strand, within ABIE40_RS29280 at 554.612 kb on + strand, within ABIE40_RS29280 at 554.613 kb on - strand, within ABIE40_RS29280 at 554.613 kb on - strand, within ABIE40_RS29280 at 554.789 kb on + strand, within ABIE40_RS29280 at 554.790 kb on - strand, within ABIE40_RS29280 at 554.793 kb on + strand, within ABIE40_RS29280 at 554.793 kb on + strand, within ABIE40_RS29280 at 554.794 kb on - strand, within ABIE40_RS29280 at 554.834 kb on + strand, within ABIE40_RS29280 at 554.834 kb on + strand, within ABIE40_RS29280 at 554.834 kb on + strand, within ABIE40_RS29280 at 554.834 kb on + strand, within ABIE40_RS29280 at 554.835 kb on - strand, within ABIE40_RS29280 at 554.835 kb on - strand, within ABIE40_RS29280 at 554.859 kb on - strand, within ABIE40_RS29280 at 554.859 kb on - strand, within ABIE40_RS29280 at 555.054 kb on + strand at 555.054 kb on + strand at 555.055 kb on - strand at 555.055 kb on - strand at 555.096 kb on - strand at 555.096 kb on - strand at 555.102 kb on + strand at 555.102 kb on + strand at 555.103 kb on - strand at 555.103 kb on - strand at 555.103 kb on - strand at 555.128 kb on - strand at 555.207 kb on + strand at 555.360 kb on + strand, within ABIE40_RS29285 at 555.360 kb on + strand, within ABIE40_RS29285 at 555.482 kb on - strand, within ABIE40_RS29285 at 555.532 kb on - strand, within ABIE40_RS29285 at 555.566 kb on - strand, within ABIE40_RS29285 at 555.617 kb on + strand, within ABIE40_RS29285 at 555.706 kb on + strand, within ABIE40_RS29285 at 555.706 kb on + strand, within ABIE40_RS29285 at 555.707 kb on - strand, within ABIE40_RS29285 at 555.707 kb on - strand, within ABIE40_RS29285 at 555.823 kb on + strand, within ABIE40_RS29285 at 555.824 kb on - strand, within ABIE40_RS29285 at 555.840 kb on + strand, within ABIE40_RS29285 at 555.841 kb on - strand, within ABIE40_RS29285 at 555.926 kb on + strand, within ABIE40_RS29285 at 555.927 kb on - strand, within ABIE40_RS29285 at 555.945 kb on - strand, within ABIE40_RS29285 at 555.964 kb on + strand, within ABIE40_RS29285
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 10.6206 mM remove 552,846 - ABIE40_RS29275 0.50 -0.7 552,850 + ABIE40_RS29275 0.50 -1.0 552,851 - ABIE40_RS29275 0.50 +0.4 552,899 + ABIE40_RS29275 0.55 +0.3 552,900 - ABIE40_RS29275 0.55 +1.1 553,025 - ABIE40_RS29275 0.68 +1.1 553,025 - ABIE40_RS29275 0.68 +0.7 553,080 - ABIE40_RS29275 0.73 +1.3 553,099 + ABIE40_RS29275 0.75 -0.4 553,099 + ABIE40_RS29275 0.75 +0.7 553,099 + ABIE40_RS29275 0.75 +0.1 553,099 + ABIE40_RS29275 0.75 -0.7 553,100 - ABIE40_RS29275 0.75 -0.3 553,128 + ABIE40_RS29275 0.78 +0.6 553,129 - ABIE40_RS29275 0.78 +2.1 553,129 - ABIE40_RS29275 0.78 +0.6 553,129 - ABIE40_RS29275 0.78 +0.4 553,196 - ABIE40_RS29275 0.85 +0.8 553,259 - +2.1 553,259 - -0.9 553,338 + +1.8 553,362 + +1.0 553,362 + +0.7 553,362 + -0.2 553,434 - +1.0 553,434 - +0.2 553,434 - -0.3 553,477 + -0.9 553,478 - +0.0 553,485 + -2.7 553,485 + +2.1 553,486 - -1.2 553,486 - -0.7 553,488 - +2.1 553,538 + +1.1 553,539 - -0.4 553,560 + -0.2 553,560 + +0.6 553,561 - +1.1 553,634 + -0.1 553,813 + +2.1 553,822 + -0.0 553,823 - +1.1 553,829 + +0.7 553,870 - -0.9 553,897 + -0.5 553,990 - ABIE40_RS29280 0.13 +0.6 554,129 - ABIE40_RS29280 0.25 +0.6 554,156 + ABIE40_RS29280 0.27 +0.6 554,332 + ABIE40_RS29280 0.42 +0.1 554,332 + ABIE40_RS29280 0.42 -0.6 554,333 - ABIE40_RS29280 0.42 +0.4 554,333 - ABIE40_RS29280 0.42 +1.6 554,359 + ABIE40_RS29280 0.44 +1.0 554,359 + ABIE40_RS29280 0.44 -0.2 554,453 + ABIE40_RS29280 0.52 -1.3 554,453 + ABIE40_RS29280 0.52 +0.6 554,453 + ABIE40_RS29280 0.52 +1.9 554,453 + ABIE40_RS29280 0.52 +0.0 554,454 - ABIE40_RS29280 0.52 -2.3 554,456 + ABIE40_RS29280 0.52 +2.7 554,456 + ABIE40_RS29280 0.52 -2.0 554,456 + ABIE40_RS29280 0.52 +0.2 554,456 + ABIE40_RS29280 0.52 -1.9 554,457 - ABIE40_RS29280 0.52 -0.4 554,457 - ABIE40_RS29280 0.52 -1.9 554,457 - ABIE40_RS29280 0.52 -1.4 554,457 - ABIE40_RS29280 0.52 -1.6 554,457 - ABIE40_RS29280 0.52 -0.1 554,457 - ABIE40_RS29280 0.52 -0.2 554,502 + ABIE40_RS29280 0.56 -0.7 554,503 - ABIE40_RS29280 0.56 -0.7 554,612 + ABIE40_RS29280 0.65 -0.4 554,612 + ABIE40_RS29280 0.65 -0.9 554,613 - ABIE40_RS29280 0.65 +0.5 554,613 - ABIE40_RS29280 0.65 -1.0 554,789 + ABIE40_RS29280 0.79 -1.7 554,790 - ABIE40_RS29280 0.80 +0.3 554,793 + ABIE40_RS29280 0.80 -1.0 554,793 + ABIE40_RS29280 0.80 +1.1 554,794 - ABIE40_RS29280 0.80 +0.5 554,834 + ABIE40_RS29280 0.83 +0.2 554,834 + ABIE40_RS29280 0.83 +0.1 554,834 + ABIE40_RS29280 0.83 -3.1 554,834 + ABIE40_RS29280 0.83 -1.9 554,835 - ABIE40_RS29280 0.83 -1.9 554,835 - ABIE40_RS29280 0.83 +0.5 554,859 - ABIE40_RS29280 0.85 +0.6 554,859 - ABIE40_RS29280 0.85 -0.1 555,054 + -0.4 555,054 + -1.2 555,055 - -1.7 555,055 - -0.3 555,096 - -0.3 555,096 - -1.8 555,102 + +0.1 555,102 + +0.1 555,103 - -1.0 555,103 - +3.1 555,103 - -1.8 555,128 - +1.1 555,207 + +0.4 555,360 + ABIE40_RS29285 0.19 +0.4 555,360 + ABIE40_RS29285 0.19 -0.9 555,482 - ABIE40_RS29285 0.28 -0.6 555,532 - ABIE40_RS29285 0.32 -0.6 555,566 - ABIE40_RS29285 0.35 -0.7 555,617 + ABIE40_RS29285 0.38 +1.1 555,706 + ABIE40_RS29285 0.45 -1.0 555,706 + ABIE40_RS29285 0.45 +2.1 555,707 - ABIE40_RS29285 0.45 -1.2 555,707 - ABIE40_RS29285 0.45 -0.9 555,823 + ABIE40_RS29285 0.54 -0.2 555,824 - ABIE40_RS29285 0.54 +0.6 555,840 + ABIE40_RS29285 0.55 +0.3 555,841 - ABIE40_RS29285 0.55 -0.9 555,926 + ABIE40_RS29285 0.62 -1.1 555,927 - ABIE40_RS29285 0.62 +1.1 555,945 - ABIE40_RS29285 0.63 -1.0 555,964 + ABIE40_RS29285 0.65 +0.3
Or see this region's nucleotide sequence