Experiment: R2A with 3-octanone 10.6206 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS22555 and ABIE40_RS22560 are separated by 1 nucleotides ABIE40_RS22560 and ABIE40_RS22565 are separated by 10 nucleotides
ABIE40_RS22555: ABIE40_RS22555 - ABC transporter permease, at 649,059 to 650,066
_RS22555
ABIE40_RS22560: ABIE40_RS22560 - ABC transporter permease, at 650,068 to 651,198
_RS22560
ABIE40_RS22565: ABIE40_RS22565 - ABC transporter ATP-binding protein, at 651,209 to 652,876
_RS22565
Position (kb) 650
651
652 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 649.158 kb on + strand at 649.159 kb on - strand at 649.167 kb on + strand, within ABIE40_RS22555 at 649.168 kb on - strand, within ABIE40_RS22555 at 649.168 kb on - strand, within ABIE40_RS22555 at 649.259 kb on + strand, within ABIE40_RS22555 at 649.260 kb on - strand, within ABIE40_RS22555 at 649.279 kb on - strand, within ABIE40_RS22555 at 649.335 kb on + strand, within ABIE40_RS22555 at 649.335 kb on + strand, within ABIE40_RS22555 at 649.336 kb on - strand, within ABIE40_RS22555 at 649.336 kb on - strand, within ABIE40_RS22555 at 649.430 kb on - strand, within ABIE40_RS22555 at 649.461 kb on + strand, within ABIE40_RS22555 at 649.461 kb on + strand, within ABIE40_RS22555 at 649.461 kb on + strand, within ABIE40_RS22555 at 649.461 kb on + strand, within ABIE40_RS22555 at 649.461 kb on + strand, within ABIE40_RS22555 at 649.462 kb on - strand, within ABIE40_RS22555 at 649.545 kb on + strand, within ABIE40_RS22555 at 649.545 kb on + strand, within ABIE40_RS22555 at 649.545 kb on + strand, within ABIE40_RS22555 at 649.546 kb on - strand, within ABIE40_RS22555 at 649.546 kb on - strand, within ABIE40_RS22555 at 649.603 kb on - strand, within ABIE40_RS22555 at 649.695 kb on + strand, within ABIE40_RS22555 at 649.695 kb on + strand, within ABIE40_RS22555 at 649.696 kb on - strand, within ABIE40_RS22555 at 649.746 kb on + strand, within ABIE40_RS22555 at 649.746 kb on + strand, within ABIE40_RS22555 at 649.747 kb on - strand, within ABIE40_RS22555 at 649.747 kb on - strand, within ABIE40_RS22555 at 649.747 kb on - strand, within ABIE40_RS22555 at 649.747 kb on - strand, within ABIE40_RS22555 at 649.836 kb on + strand, within ABIE40_RS22555 at 649.836 kb on + strand, within ABIE40_RS22555 at 649.836 kb on + strand, within ABIE40_RS22555 at 649.837 kb on - strand, within ABIE40_RS22555 at 649.837 kb on - strand, within ABIE40_RS22555 at 649.837 kb on - strand, within ABIE40_RS22555 at 649.837 kb on - strand, within ABIE40_RS22555 at 649.857 kb on + strand, within ABIE40_RS22555 at 649.857 kb on + strand, within ABIE40_RS22555 at 649.858 kb on - strand, within ABIE40_RS22555 at 649.950 kb on + strand, within ABIE40_RS22555 at 649.950 kb on + strand, within ABIE40_RS22555 at 649.950 kb on + strand, within ABIE40_RS22555 at 649.950 kb on + strand, within ABIE40_RS22555 at 649.951 kb on - strand, within ABIE40_RS22555 at 649.951 kb on - strand, within ABIE40_RS22555 at 649.951 kb on - strand, within ABIE40_RS22555 at 649.951 kb on - strand, within ABIE40_RS22555 at 649.951 kb on - strand, within ABIE40_RS22555 at 649.951 kb on - strand, within ABIE40_RS22555 at 649.962 kb on - strand, within ABIE40_RS22555 at 649.962 kb on - strand, within ABIE40_RS22555 at 649.962 kb on - strand, within ABIE40_RS22555 at 649.962 kb on - strand, within ABIE40_RS22555 at 649.962 kb on - strand, within ABIE40_RS22555 at 650.003 kb on + strand at 650.003 kb on + strand at 650.004 kb on - strand at 650.004 kb on - strand at 650.004 kb on - strand at 650.052 kb on + strand at 650.053 kb on - strand at 650.053 kb on - strand at 650.143 kb on + strand at 650.144 kb on - strand at 650.144 kb on - strand at 650.144 kb on - strand at 650.144 kb on - strand at 650.144 kb on - strand at 650.313 kb on + strand, within ABIE40_RS22560 at 650.313 kb on + strand, within ABIE40_RS22560 at 650.313 kb on + strand, within ABIE40_RS22560 at 650.314 kb on - strand, within ABIE40_RS22560 at 650.407 kb on + strand, within ABIE40_RS22560 at 650.407 kb on + strand, within ABIE40_RS22560 at 650.408 kb on - strand, within ABIE40_RS22560 at 650.408 kb on - strand, within ABIE40_RS22560 at 650.731 kb on + strand, within ABIE40_RS22560 at 650.731 kb on + strand, within ABIE40_RS22560 at 650.731 kb on + strand, within ABIE40_RS22560 at 650.773 kb on + strand, within ABIE40_RS22560 at 650.775 kb on + strand, within ABIE40_RS22560 at 650.775 kb on + strand, within ABIE40_RS22560 at 650.775 kb on + strand, within ABIE40_RS22560 at 650.776 kb on - strand, within ABIE40_RS22560 at 650.776 kb on - strand, within ABIE40_RS22560 at 650.875 kb on + strand, within ABIE40_RS22560 at 650.876 kb on - strand, within ABIE40_RS22560 at 650.876 kb on - strand, within ABIE40_RS22560 at 650.876 kb on - strand, within ABIE40_RS22560 at 650.876 kb on - strand, within ABIE40_RS22560 at 650.979 kb on + strand, within ABIE40_RS22560 at 650.979 kb on + strand, within ABIE40_RS22560 at 650.980 kb on - strand, within ABIE40_RS22560 at 650.980 kb on - strand, within ABIE40_RS22560 at 651.083 kb on - strand, within ABIE40_RS22560 at 651.083 kb on - strand, within ABIE40_RS22560 at 651.100 kb on + strand at 651.100 kb on + strand at 651.101 kb on - strand at 651.349 kb on + strand at 651.349 kb on + strand at 651.349 kb on + strand at 651.349 kb on + strand at 651.350 kb on - strand at 651.365 kb on + strand at 651.365 kb on + strand at 651.486 kb on - strand, within ABIE40_RS22565 at 651.499 kb on + strand, within ABIE40_RS22565 at 651.594 kb on - strand, within ABIE40_RS22565 at 651.594 kb on - strand, within ABIE40_RS22565 at 651.944 kb on + strand, within ABIE40_RS22565 at 651.945 kb on - strand, within ABIE40_RS22565 at 651.950 kb on + strand, within ABIE40_RS22565 at 651.950 kb on + strand, within ABIE40_RS22565 at 651.985 kb on + strand, within ABIE40_RS22565 at 651.985 kb on + strand, within ABIE40_RS22565 at 651.985 kb on + strand, within ABIE40_RS22565 at 651.986 kb on - strand, within ABIE40_RS22565 at 652.020 kb on + strand, within ABIE40_RS22565 at 652.023 kb on - strand, within ABIE40_RS22565 at 652.023 kb on - strand, within ABIE40_RS22565 at 652.023 kb on - strand, within ABIE40_RS22565 at 652.023 kb on - strand, within ABIE40_RS22565 at 652.023 kb on - strand, within ABIE40_RS22565 at 652.023 kb on - strand, within ABIE40_RS22565 at 652.024 kb on + strand, within ABIE40_RS22565 at 652.025 kb on - strand, within ABIE40_RS22565 at 652.087 kb on + strand, within ABIE40_RS22565 at 652.088 kb on - strand, within ABIE40_RS22565
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 10.6206 mM remove 649,158 + -1.7 649,159 - -0.4 649,167 + ABIE40_RS22555 0.11 -0.5 649,168 - ABIE40_RS22555 0.11 +1.1 649,168 - ABIE40_RS22555 0.11 +0.3 649,259 + ABIE40_RS22555 0.20 +1.2 649,260 - ABIE40_RS22555 0.20 +0.7 649,279 - ABIE40_RS22555 0.22 -0.0 649,335 + ABIE40_RS22555 0.27 -0.3 649,335 + ABIE40_RS22555 0.27 +1.7 649,336 - ABIE40_RS22555 0.27 +0.2 649,336 - ABIE40_RS22555 0.27 -0.2 649,430 - ABIE40_RS22555 0.37 -0.3 649,461 + ABIE40_RS22555 0.40 -1.6 649,461 + ABIE40_RS22555 0.40 -0.3 649,461 + ABIE40_RS22555 0.40 -0.4 649,461 + ABIE40_RS22555 0.40 +0.5 649,461 + ABIE40_RS22555 0.40 -0.9 649,462 - ABIE40_RS22555 0.40 +0.0 649,545 + ABIE40_RS22555 0.48 -0.4 649,545 + ABIE40_RS22555 0.48 -1.7 649,545 + ABIE40_RS22555 0.48 -1.2 649,546 - ABIE40_RS22555 0.48 +0.7 649,546 - ABIE40_RS22555 0.48 +0.0 649,603 - ABIE40_RS22555 0.54 +0.5 649,695 + ABIE40_RS22555 0.63 -1.2 649,695 + ABIE40_RS22555 0.63 -0.6 649,696 - ABIE40_RS22555 0.63 +0.8 649,746 + ABIE40_RS22555 0.68 +2.2 649,746 + ABIE40_RS22555 0.68 +0.4 649,747 - ABIE40_RS22555 0.68 +2.0 649,747 - ABIE40_RS22555 0.68 -1.1 649,747 - ABIE40_RS22555 0.68 +0.1 649,747 - ABIE40_RS22555 0.68 +2.0 649,836 + ABIE40_RS22555 0.77 +0.2 649,836 + ABIE40_RS22555 0.77 +2.7 649,836 + ABIE40_RS22555 0.77 -1.3 649,837 - ABIE40_RS22555 0.77 +0.4 649,837 - ABIE40_RS22555 0.77 +0.4 649,837 - ABIE40_RS22555 0.77 +0.4 649,837 - ABIE40_RS22555 0.77 -2.6 649,857 + ABIE40_RS22555 0.79 +2.0 649,857 + ABIE40_RS22555 0.79 -0.5 649,858 - ABIE40_RS22555 0.79 -0.1 649,950 + ABIE40_RS22555 0.88 +0.6 649,950 + ABIE40_RS22555 0.88 +0.8 649,950 + ABIE40_RS22555 0.88 +2.0 649,950 + ABIE40_RS22555 0.88 -0.4 649,951 - ABIE40_RS22555 0.88 -2.1 649,951 - ABIE40_RS22555 0.88 -2.3 649,951 - ABIE40_RS22555 0.88 -0.3 649,951 - ABIE40_RS22555 0.88 +0.4 649,951 - ABIE40_RS22555 0.88 -1.2 649,951 - ABIE40_RS22555 0.88 -0.8 649,962 - ABIE40_RS22555 0.90 -0.4 649,962 - ABIE40_RS22555 0.90 -1.0 649,962 - ABIE40_RS22555 0.90 -0.4 649,962 - ABIE40_RS22555 0.90 -1.3 649,962 - ABIE40_RS22555 0.90 -0.3 650,003 + +0.9 650,003 + +0.7 650,004 - +0.0 650,004 - +0.4 650,004 - +3.6 650,052 + -0.9 650,053 - -0.2 650,053 - -1.2 650,143 + -2.6 650,144 - -0.7 650,144 - -0.1 650,144 - +0.3 650,144 - -1.9 650,144 - -0.3 650,313 + ABIE40_RS22560 0.22 -1.1 650,313 + ABIE40_RS22560 0.22 -0.5 650,313 + ABIE40_RS22560 0.22 -0.3 650,314 - ABIE40_RS22560 0.22 -0.2 650,407 + ABIE40_RS22560 0.30 -2.0 650,407 + ABIE40_RS22560 0.30 -3.1 650,408 - ABIE40_RS22560 0.30 -0.5 650,408 - ABIE40_RS22560 0.30 +2.0 650,731 + ABIE40_RS22560 0.59 -0.4 650,731 + ABIE40_RS22560 0.59 -0.3 650,731 + ABIE40_RS22560 0.59 -1.6 650,773 + ABIE40_RS22560 0.62 -0.6 650,775 + ABIE40_RS22560 0.63 -2.7 650,775 + ABIE40_RS22560 0.63 -0.5 650,775 + ABIE40_RS22560 0.63 -0.8 650,776 - ABIE40_RS22560 0.63 +0.0 650,776 - ABIE40_RS22560 0.63 -1.2 650,875 + ABIE40_RS22560 0.71 +0.2 650,876 - ABIE40_RS22560 0.71 -0.3 650,876 - ABIE40_RS22560 0.71 +0.1 650,876 - ABIE40_RS22560 0.71 -0.9 650,876 - ABIE40_RS22560 0.71 -0.8 650,979 + ABIE40_RS22560 0.81 -1.0 650,979 + ABIE40_RS22560 0.81 -0.5 650,980 - ABIE40_RS22560 0.81 -1.4 650,980 - ABIE40_RS22560 0.81 -0.3 651,083 - ABIE40_RS22560 0.90 -0.9 651,083 - ABIE40_RS22560 0.90 +1.5 651,100 + +0.4 651,100 + +0.4 651,101 - -0.3 651,349 + -2.2 651,349 + +2.0 651,349 + +0.6 651,349 + +3.0 651,350 - +1.0 651,365 + -1.8 651,365 + -0.9 651,486 - ABIE40_RS22565 0.17 -0.4 651,499 + ABIE40_RS22565 0.17 +2.6 651,594 - ABIE40_RS22565 0.23 -0.1 651,594 - ABIE40_RS22565 0.23 +0.0 651,944 + ABIE40_RS22565 0.44 -1.7 651,945 - ABIE40_RS22565 0.44 -1.2 651,950 + ABIE40_RS22565 0.44 +0.0 651,950 + ABIE40_RS22565 0.44 +1.4 651,985 + ABIE40_RS22565 0.47 +0.4 651,985 + ABIE40_RS22565 0.47 -1.9 651,985 + ABIE40_RS22565 0.47 -1.6 651,986 - ABIE40_RS22565 0.47 +2.6 652,020 + ABIE40_RS22565 0.49 +1.8 652,023 - ABIE40_RS22565 0.49 -0.3 652,023 - ABIE40_RS22565 0.49 -2.5 652,023 - ABIE40_RS22565 0.49 -0.7 652,023 - ABIE40_RS22565 0.49 +1.0 652,023 - ABIE40_RS22565 0.49 -2.4 652,023 - ABIE40_RS22565 0.49 -0.8 652,024 + ABIE40_RS22565 0.49 +3.5 652,025 - ABIE40_RS22565 0.49 -0.1 652,087 + ABIE40_RS22565 0.53 -0.6 652,088 - ABIE40_RS22565 0.53 -0.2
Or see this region's nucleotide sequence