Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS22550

Experiment: R2A with 3-octanone 10.6206 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS22545 and ABIE40_RS22550 are separated by 124 nucleotidesABIE40_RS22550 and ABIE40_RS22555 are separated by 116 nucleotides ABIE40_RS22545: ABIE40_RS22545 - alpha-glucosidase/alpha-galactosidase, at 645,264 to 646,730 _RS22545 ABIE40_RS22550: ABIE40_RS22550 - ABC transporter substrate-binding protein, at 646,855 to 648,942 _RS22550 ABIE40_RS22555: ABIE40_RS22555 - ABC transporter permease, at 649,059 to 650,066 _RS22555 Position (kb) 646 647 648 649Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 646.003 kb on - strand, within ABIE40_RS22545at 646.035 kb on + strand, within ABIE40_RS22545at 646.035 kb on + strand, within ABIE40_RS22545at 646.100 kb on - strand, within ABIE40_RS22545at 646.100 kb on - strand, within ABIE40_RS22545at 646.119 kb on + strand, within ABIE40_RS22545at 646.235 kb on + strand, within ABIE40_RS22545at 646.235 kb on + strand, within ABIE40_RS22545at 646.235 kb on + strand, within ABIE40_RS22545at 646.236 kb on - strand, within ABIE40_RS22545at 646.236 kb on - strand, within ABIE40_RS22545at 646.587 kb on + strandat 646.588 kb on - strandat 646.601 kb on - strandat 646.990 kb on + strandat 646.990 kb on + strandat 646.990 kb on + strandat 646.991 kb on - strandat 646.991 kb on - strandat 646.991 kb on - strandat 646.991 kb on - strandat 646.991 kb on - strandat 646.991 kb on - strandat 646.991 kb on - strandat 646.991 kb on - strandat 646.991 kb on - strandat 647.035 kb on + strandat 647.035 kb on + strandat 647.036 kb on - strandat 647.037 kb on + strandat 647.038 kb on - strandat 647.161 kb on + strand, within ABIE40_RS22550at 647.161 kb on + strand, within ABIE40_RS22550at 647.162 kb on - strand, within ABIE40_RS22550at 647.185 kb on - strand, within ABIE40_RS22550at 647.212 kb on + strand, within ABIE40_RS22550at 647.212 kb on + strand, within ABIE40_RS22550at 647.212 kb on + strand, within ABIE40_RS22550at 647.330 kb on + strand, within ABIE40_RS22550at 647.331 kb on - strand, within ABIE40_RS22550at 647.331 kb on - strand, within ABIE40_RS22550at 647.440 kb on + strand, within ABIE40_RS22550at 647.542 kb on + strand, within ABIE40_RS22550at 647.542 kb on + strand, within ABIE40_RS22550at 647.543 kb on - strand, within ABIE40_RS22550at 647.543 kb on - strand, within ABIE40_RS22550at 647.543 kb on - strand, within ABIE40_RS22550at 647.543 kb on - strand, within ABIE40_RS22550at 647.543 kb on - strand, within ABIE40_RS22550at 647.584 kb on + strand, within ABIE40_RS22550at 647.584 kb on + strand, within ABIE40_RS22550at 647.584 kb on + strand, within ABIE40_RS22550at 647.584 kb on + strand, within ABIE40_RS22550at 647.585 kb on - strand, within ABIE40_RS22550at 647.585 kb on - strand, within ABIE40_RS22550at 647.585 kb on - strand, within ABIE40_RS22550at 647.585 kb on - strand, within ABIE40_RS22550at 647.585 kb on - strand, within ABIE40_RS22550at 647.585 kb on - strand, within ABIE40_RS22550at 647.585 kb on - strand, within ABIE40_RS22550at 647.591 kb on - strand, within ABIE40_RS22550at 647.592 kb on + strand, within ABIE40_RS22550at 647.593 kb on - strand, within ABIE40_RS22550at 647.593 kb on - strand, within ABIE40_RS22550at 647.593 kb on - strand, within ABIE40_RS22550at 647.593 kb on - strand, within ABIE40_RS22550at 647.603 kb on - strand, within ABIE40_RS22550at 647.631 kb on + strand, within ABIE40_RS22550at 647.632 kb on - strand, within ABIE40_RS22550at 647.656 kb on + strand, within ABIE40_RS22550at 647.657 kb on - strand, within ABIE40_RS22550at 647.671 kb on + strand, within ABIE40_RS22550at 647.671 kb on + strand, within ABIE40_RS22550at 647.671 kb on + strand, within ABIE40_RS22550at 647.672 kb on - strand, within ABIE40_RS22550at 647.746 kb on + strand, within ABIE40_RS22550at 647.759 kb on + strand, within ABIE40_RS22550at 647.785 kb on + strand, within ABIE40_RS22550at 647.788 kb on + strand, within ABIE40_RS22550at 647.788 kb on + strand, within ABIE40_RS22550at 647.824 kb on + strand, within ABIE40_RS22550at 647.842 kb on + strand, within ABIE40_RS22550at 647.843 kb on - strand, within ABIE40_RS22550at 648.002 kb on - strand, within ABIE40_RS22550at 648.002 kb on - strand, within ABIE40_RS22550at 648.202 kb on + strand, within ABIE40_RS22550at 648.202 kb on + strand, within ABIE40_RS22550at 648.203 kb on - strand, within ABIE40_RS22550at 648.203 kb on - strand, within ABIE40_RS22550at 648.223 kb on + strand, within ABIE40_RS22550at 648.223 kb on + strand, within ABIE40_RS22550at 648.223 kb on + strand, within ABIE40_RS22550at 648.223 kb on + strand, within ABIE40_RS22550at 648.224 kb on - strand, within ABIE40_RS22550at 648.224 kb on - strand, within ABIE40_RS22550at 648.224 kb on - strand, within ABIE40_RS22550at 648.226 kb on + strand, within ABIE40_RS22550at 648.226 kb on + strand, within ABIE40_RS22550at 648.465 kb on + strand, within ABIE40_RS22550at 648.466 kb on - strand, within ABIE40_RS22550at 648.475 kb on + strand, within ABIE40_RS22550at 648.476 kb on - strand, within ABIE40_RS22550at 648.476 kb on - strand, within ABIE40_RS22550at 648.623 kb on - strand, within ABIE40_RS22550at 648.703 kb on + strand, within ABIE40_RS22550at 648.751 kb on + strandat 648.751 kb on + strandat 648.788 kb on - strandat 648.802 kb on - strandat 648.802 kb on - strandat 648.883 kb on + strandat 648.940 kb on + strandat 648.940 kb on + strandat 648.940 kb on + strandat 648.941 kb on - strandat 648.941 kb on - strandat 648.941 kb on - strandat 648.941 kb on - strandat 648.999 kb on + strandat 648.999 kb on + strandat 648.999 kb on + strandat 649.000 kb on - strandat 649.000 kb on - strandat 649.020 kb on + strandat 649.158 kb on + strandat 649.159 kb on - strandat 649.167 kb on + strand, within ABIE40_RS22555at 649.168 kb on - strand, within ABIE40_RS22555at 649.168 kb on - strand, within ABIE40_RS22555at 649.259 kb on + strand, within ABIE40_RS22555at 649.260 kb on - strand, within ABIE40_RS22555at 649.279 kb on - strand, within ABIE40_RS22555at 649.335 kb on + strand, within ABIE40_RS22555at 649.335 kb on + strand, within ABIE40_RS22555at 649.336 kb on - strand, within ABIE40_RS22555at 649.336 kb on - strand, within ABIE40_RS22555at 649.430 kb on - strand, within ABIE40_RS22555at 649.461 kb on + strand, within ABIE40_RS22555at 649.461 kb on + strand, within ABIE40_RS22555at 649.461 kb on + strand, within ABIE40_RS22555at 649.461 kb on + strand, within ABIE40_RS22555at 649.461 kb on + strand, within ABIE40_RS22555at 649.462 kb on - strand, within ABIE40_RS22555at 649.545 kb on + strand, within ABIE40_RS22555at 649.545 kb on + strand, within ABIE40_RS22555at 649.545 kb on + strand, within ABIE40_RS22555at 649.546 kb on - strand, within ABIE40_RS22555at 649.546 kb on - strand, within ABIE40_RS22555at 649.603 kb on - strand, within ABIE40_RS22555at 649.695 kb on + strand, within ABIE40_RS22555at 649.695 kb on + strand, within ABIE40_RS22555at 649.696 kb on - strand, within ABIE40_RS22555at 649.746 kb on + strand, within ABIE40_RS22555at 649.746 kb on + strand, within ABIE40_RS22555at 649.747 kb on - strand, within ABIE40_RS22555at 649.747 kb on - strand, within ABIE40_RS22555at 649.747 kb on - strand, within ABIE40_RS22555at 649.747 kb on - strand, within ABIE40_RS22555at 649.836 kb on + strand, within ABIE40_RS22555at 649.836 kb on + strand, within ABIE40_RS22555at 649.836 kb on + strand, within ABIE40_RS22555at 649.837 kb on - strand, within ABIE40_RS22555at 649.837 kb on - strand, within ABIE40_RS22555at 649.837 kb on - strand, within ABIE40_RS22555at 649.837 kb on - strand, within ABIE40_RS22555at 649.857 kb on + strand, within ABIE40_RS22555at 649.857 kb on + strand, within ABIE40_RS22555at 649.858 kb on - strand, within ABIE40_RS22555

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 10.6206 mM
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646,003 - ABIE40_RS22545 0.50 -0.9
646,035 + ABIE40_RS22545 0.53 -0.5
646,035 + ABIE40_RS22545 0.53 +0.7
646,100 - ABIE40_RS22545 0.57 -0.3
646,100 - ABIE40_RS22545 0.57 -1.2
646,119 + ABIE40_RS22545 0.58 +1.0
646,235 + ABIE40_RS22545 0.66 +1.1
646,235 + ABIE40_RS22545 0.66 -1.2
646,235 + ABIE40_RS22545 0.66 +0.3
646,236 - ABIE40_RS22545 0.66 -1.6
646,236 - ABIE40_RS22545 0.66 +0.1
646,587 + +1.0
646,588 - +0.6
646,601 - +2.0
646,990 + -0.1
646,990 + +2.0
646,990 + +0.0
646,991 - -0.4
646,991 - +2.0
646,991 - +2.0
646,991 - -1.1
646,991 - -1.1
646,991 - -0.3
646,991 - -0.7
646,991 - -1.7
646,991 - +0.1
647,035 + -0.9
647,035 + -0.1
647,036 - +0.3
647,037 + -0.1
647,038 - +3.0
647,161 + ABIE40_RS22550 0.15 -0.3
647,161 + ABIE40_RS22550 0.15 -0.2
647,162 - ABIE40_RS22550 0.15 -0.7
647,185 - ABIE40_RS22550 0.16 -4.0
647,212 + ABIE40_RS22550 0.17 -0.8
647,212 + ABIE40_RS22550 0.17 -0.9
647,212 + ABIE40_RS22550 0.17 -0.9
647,330 + ABIE40_RS22550 0.23 +0.4
647,331 - ABIE40_RS22550 0.23 -0.5
647,331 - ABIE40_RS22550 0.23 +0.8
647,440 + ABIE40_RS22550 0.28 -0.3
647,542 + ABIE40_RS22550 0.33 -2.7
647,542 + ABIE40_RS22550 0.33 +0.4
647,543 - ABIE40_RS22550 0.33 +0.2
647,543 - ABIE40_RS22550 0.33 +1.0
647,543 - ABIE40_RS22550 0.33 -0.3
647,543 - ABIE40_RS22550 0.33 -0.3
647,543 - ABIE40_RS22550 0.33 -0.8
647,584 + ABIE40_RS22550 0.35 +0.1
647,584 + ABIE40_RS22550 0.35 -1.1
647,584 + ABIE40_RS22550 0.35 +0.4
647,584 + ABIE40_RS22550 0.35 -2.6
647,585 - ABIE40_RS22550 0.35 +0.2
647,585 - ABIE40_RS22550 0.35 -1.0
647,585 - ABIE40_RS22550 0.35 -0.7
647,585 - ABIE40_RS22550 0.35 -0.5
647,585 - ABIE40_RS22550 0.35 -2.2
647,585 - ABIE40_RS22550 0.35 -0.3
647,585 - ABIE40_RS22550 0.35 +1.0
647,591 - ABIE40_RS22550 0.35 -1.2
647,592 + ABIE40_RS22550 0.35 +0.2
647,593 - ABIE40_RS22550 0.35 -0.4
647,593 - ABIE40_RS22550 0.35 +0.4
647,593 - ABIE40_RS22550 0.35 +0.4
647,593 - ABIE40_RS22550 0.35 -0.4
647,603 - ABIE40_RS22550 0.36 -2.6
647,631 + ABIE40_RS22550 0.37 +1.4
647,632 - ABIE40_RS22550 0.37 -1.3
647,656 + ABIE40_RS22550 0.38 +0.3
647,657 - ABIE40_RS22550 0.38 -1.6
647,671 + ABIE40_RS22550 0.39 -1.2
647,671 + ABIE40_RS22550 0.39 -0.9
647,671 + ABIE40_RS22550 0.39 -1.2
647,672 - ABIE40_RS22550 0.39 -1.6
647,746 + ABIE40_RS22550 0.43 +0.7
647,759 + ABIE40_RS22550 0.43 -0.9
647,785 + ABIE40_RS22550 0.45 -0.1
647,788 + ABIE40_RS22550 0.45 -1.0
647,788 + ABIE40_RS22550 0.45 -0.4
647,824 + ABIE40_RS22550 0.46 +0.0
647,842 + ABIE40_RS22550 0.47 +0.8
647,843 - ABIE40_RS22550 0.47 +0.3
648,002 - ABIE40_RS22550 0.55 -2.3
648,002 - ABIE40_RS22550 0.55 +1.8
648,202 + ABIE40_RS22550 0.65 -2.1
648,202 + ABIE40_RS22550 0.65 +0.0
648,203 - ABIE40_RS22550 0.65 +0.2
648,203 - ABIE40_RS22550 0.65 -2.1
648,223 + ABIE40_RS22550 0.66 -0.5
648,223 + ABIE40_RS22550 0.66 -0.3
648,223 + ABIE40_RS22550 0.66 +1.1
648,223 + ABIE40_RS22550 0.66 -0.7
648,224 - ABIE40_RS22550 0.66 -0.3
648,224 - ABIE40_RS22550 0.66 +0.6
648,224 - ABIE40_RS22550 0.66 -0.2
648,226 + ABIE40_RS22550 0.66 +0.3
648,226 + ABIE40_RS22550 0.66 +0.4
648,465 + ABIE40_RS22550 0.77 -0.0
648,466 - ABIE40_RS22550 0.77 +0.2
648,475 + ABIE40_RS22550 0.78 +0.8
648,476 - ABIE40_RS22550 0.78 -0.4
648,476 - ABIE40_RS22550 0.78 -0.7
648,623 - ABIE40_RS22550 0.85 +0.0
648,703 + ABIE40_RS22550 0.89 -0.1
648,751 + +0.7
648,751 + -0.1
648,788 - -0.1
648,802 - +0.1
648,802 - +1.0
648,883 + -0.9
648,940 + +1.2
648,940 + -1.2
648,940 + +1.6
648,941 - -0.2
648,941 - -0.9
648,941 - +0.1
648,941 - +0.7
648,999 + +1.3
648,999 + -1.4
648,999 + -0.4
649,000 - +1.7
649,000 - -1.1
649,020 + -0.2
649,158 + -1.7
649,159 - -0.4
649,167 + ABIE40_RS22555 0.11 -0.5
649,168 - ABIE40_RS22555 0.11 +1.1
649,168 - ABIE40_RS22555 0.11 +0.3
649,259 + ABIE40_RS22555 0.20 +1.2
649,260 - ABIE40_RS22555 0.20 +0.7
649,279 - ABIE40_RS22555 0.22 -0.0
649,335 + ABIE40_RS22555 0.27 -0.3
649,335 + ABIE40_RS22555 0.27 +1.7
649,336 - ABIE40_RS22555 0.27 +0.2
649,336 - ABIE40_RS22555 0.27 -0.2
649,430 - ABIE40_RS22555 0.37 -0.3
649,461 + ABIE40_RS22555 0.40 -1.6
649,461 + ABIE40_RS22555 0.40 -0.3
649,461 + ABIE40_RS22555 0.40 -0.4
649,461 + ABIE40_RS22555 0.40 +0.5
649,461 + ABIE40_RS22555 0.40 -0.9
649,462 - ABIE40_RS22555 0.40 +0.0
649,545 + ABIE40_RS22555 0.48 -0.4
649,545 + ABIE40_RS22555 0.48 -1.7
649,545 + ABIE40_RS22555 0.48 -1.2
649,546 - ABIE40_RS22555 0.48 +0.7
649,546 - ABIE40_RS22555 0.48 +0.0
649,603 - ABIE40_RS22555 0.54 +0.5
649,695 + ABIE40_RS22555 0.63 -1.2
649,695 + ABIE40_RS22555 0.63 -0.6
649,696 - ABIE40_RS22555 0.63 +0.8
649,746 + ABIE40_RS22555 0.68 +2.2
649,746 + ABIE40_RS22555 0.68 +0.4
649,747 - ABIE40_RS22555 0.68 +2.0
649,747 - ABIE40_RS22555 0.68 -1.1
649,747 - ABIE40_RS22555 0.68 +0.1
649,747 - ABIE40_RS22555 0.68 +2.0
649,836 + ABIE40_RS22555 0.77 +0.2
649,836 + ABIE40_RS22555 0.77 +2.7
649,836 + ABIE40_RS22555 0.77 -1.3
649,837 - ABIE40_RS22555 0.77 +0.4
649,837 - ABIE40_RS22555 0.77 +0.4
649,837 - ABIE40_RS22555 0.77 +0.4
649,837 - ABIE40_RS22555 0.77 -2.6
649,857 + ABIE40_RS22555 0.79 +2.0
649,857 + ABIE40_RS22555 0.79 -0.5
649,858 - ABIE40_RS22555 0.79 -0.1

Or see this region's nucleotide sequence