Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS08815

Experiment: R2A with 3-octanone 10.6206 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with 3-octanone 10.6206 mM
1,697,409	+		ABIE40_RS08810	0.31	+0.9
1,697,409	+		ABIE40_RS08810	0.31	-0.0
1,697,410	-		ABIE40_RS08810	0.31	-0.5
1,697,410	-		ABIE40_RS08810	0.31	-0.1
1,697,410	-		ABIE40_RS08810	0.31	-0.9
1,697,791	-		ABIE40_RS08810	0.62	-0.6
1,697,841	+		ABIE40_RS08810	0.66	+0.2
1,697,841	+		ABIE40_RS08810	0.66	-0.2
1,697,841	+		ABIE40_RS08810	0.66	+1.1
1,697,841	+		ABIE40_RS08810	0.66	+0.6
1,697,842	-		ABIE40_RS08810	0.67	-0.2
1,697,842	-		ABIE40_RS08810	0.67	-0.3
1,697,842	-		ABIE40_RS08810	0.67	+0.2
1,697,842	-		ABIE40_RS08810	0.67	-0.7
1,697,842	-		ABIE40_RS08810	0.67	-0.8
1,697,842	-		ABIE40_RS08810	0.67	-0.4
1,697,842	-		ABIE40_RS08810	0.67	-1.6
1,697,872	+		ABIE40_RS08810	0.69	-1.3
1,697,873	-		ABIE40_RS08810	0.69	-1.9
1,697,873	-		ABIE40_RS08810	0.69	+0.0
1,697,982	+		ABIE40_RS08810	0.78	+1.2
1,698,113	+		ABIE40_RS08810	0.89	+0.4
1,698,114	-		ABIE40_RS08810	0.89	-0.4
1,698,114	-		ABIE40_RS08810	0.89	+0.1
1,698,134	+				+0.2
1,698,134	+				-0.1
1,698,135	-				-0.4
1,698,135	-				-0.5
1,698,135	-				-1.6
1,698,135	-				+1.0
1,698,164	+				+0.9
1,698,177	+				+1.0
1,698,177	+				+0.4
1,698,177	+				-1.2
1,698,178	-				+0.3
1,698,178	-				-1.0
1,698,178	-				-2.6
1,698,253	+				+0.0
1,698,254	-				-1.2
1,698,261	+				+0.2
1,698,261	+				-0.0
1,698,261	+				-1.2
1,698,261	+				+0.3
1,698,261	+				+0.2
1,698,261	+				+0.1
1,698,262	-				+1.9
1,698,262	-				+0.3
1,698,262	-				-0.9
1,698,262	-				-0.7
1,698,339	+				-0.2
1,698,450	+		ABIE40_RS08815	0.11	-1.8
1,698,451	-		ABIE40_RS08815	0.11	-0.1
1,698,451	-		ABIE40_RS08815	0.11	+0.0
1,698,477	+		ABIE40_RS08815	0.14	-0.3
1,698,478	-		ABIE40_RS08815	0.14	-2.3
1,698,550	+		ABIE40_RS08815	0.21	-1.7
1,698,627	+		ABIE40_RS08815	0.28	-1.1
1,698,628	-		ABIE40_RS08815	0.28	+0.2
1,698,759	+		ABIE40_RS08815	0.41	-0.7
1,698,760	-		ABIE40_RS08815	0.41	-0.6
1,698,760	-		ABIE40_RS08815	0.41	+0.6
1,698,783	+		ABIE40_RS08815	0.43	+0.1
1,698,784	-		ABIE40_RS08815	0.43	+0.9
1,698,808	-		ABIE40_RS08815	0.46	-0.1
1,698,808	-		ABIE40_RS08815	0.46	-1.7
1,698,852	+		ABIE40_RS08815	0.50	-0.2
1,698,853	-		ABIE40_RS08815	0.50	+2.3
1,698,876	+		ABIE40_RS08815	0.52	-0.9
1,698,877	-		ABIE40_RS08815	0.53	-1.4
1,698,914	+		ABIE40_RS08815	0.56	-1.1
1,698,915	-		ABIE40_RS08815	0.56	-0.2
1,698,915	-		ABIE40_RS08815	0.56	-1.8
1,698,915	-		ABIE40_RS08815	0.56	-1.8
1,698,993	+		ABIE40_RS08815	0.64	+1.3
1,698,993	+		ABIE40_RS08815	0.64	-0.6
1,698,993	+		ABIE40_RS08815	0.64	+1.3
1,698,993	+		ABIE40_RS08815	0.64	-1.7
1,698,993	+		ABIE40_RS08815	0.64	-2.5
1,698,993	+		ABIE40_RS08815	0.64	-0.4
1,698,994	-		ABIE40_RS08815	0.64	-1.1
1,698,994	-		ABIE40_RS08815	0.64	+0.3
1,698,996	+		ABIE40_RS08815	0.64	-0.7
1,698,996	+		ABIE40_RS08815	0.64	-1.4
1,698,996	+		ABIE40_RS08815	0.64	-2.1
1,698,997	-		ABIE40_RS08815	0.64	+0.9
1,699,057	+		ABIE40_RS08815	0.70	-1.1
1,699,058	-		ABIE40_RS08815	0.70	-0.1
1,699,126	-		ABIE40_RS08815	0.77	-1.1
1,699,126	-		ABIE40_RS08815	0.77	+0.3
1,699,126	-		ABIE40_RS08815	0.77	+0.1
1,699,126	-		ABIE40_RS08815	0.77	-1.2
1,699,126	-		ABIE40_RS08815	0.77	+1.3
1,699,274	+				-2.8
1,699,275	-				-0.4
1,699,275	-				-0.2
1,699,275	-				+0.3
1,699,354	+				-0.8
1,699,354	+				+0.9
1,699,354	+				-2.0
1,699,354	+				-1.2
1,699,355	-				-1.4
1,699,355	-				+2.3
1,699,355	-				-0.5
1,699,378	+				-2.6
1,699,378	+				+0.9
1,699,378	+				-1.2
1,699,378	+				+2.9
1,699,379	-				+0.5
1,699,379	-				-2.2
1,699,379	-				+0.9
1,699,379	-				-0.0
1,699,390	+				+0.1
1,699,390	+				-1.5
1,699,390	+				-2.2
1,699,390	+				-0.1
1,699,390	+				-1.2
1,699,391	-				-1.1
1,699,465	+				+2.5
1,699,465	+				+0.7
1,699,465	+				-2.1
1,699,553	+				-0.4
1,699,569	-				+0.2
1,699,569	-				+0.5
1,699,612	+				+1.9
1,699,612	+				-1.5
1,699,626	+				+0.3
1,699,626	+				+1.7
1,699,639	-				+1.8
1,699,722	+				-0.1
1,699,723	-				-1.4
1,699,733	-				+0.9
1,699,898	+		ABIE40_RS08820	0.14	-1.2
1,699,898	+		ABIE40_RS08820	0.14	-0.9
1,699,898	+		ABIE40_RS08820	0.14	-1.6
1,699,899	-		ABIE40_RS08820	0.14	-0.2
1,699,899	-		ABIE40_RS08820	0.14	-0.2
1,699,899	-		ABIE40_RS08820	0.14	-1.3
1,699,904	+		ABIE40_RS08820	0.14	-1.5
1,699,904	+		ABIE40_RS08820	0.14	-1.7
1,699,904	+		ABIE40_RS08820	0.14	-1.8
1,699,904	+		ABIE40_RS08820	0.14	-0.1
1,699,904	+		ABIE40_RS08820	0.14	-0.1
1,699,904	+		ABIE40_RS08820	0.14	+1.4
1,699,904	+		ABIE40_RS08820	0.14	-0.2
1,699,904	+		ABIE40_RS08820	0.14	-0.1
1,699,904	+		ABIE40_RS08820	0.14	-0.6
1,699,904	+		ABIE40_RS08820	0.14	+0.1
1,699,904	+		ABIE40_RS08820	0.14	-0.9
1,699,904	+		ABIE40_RS08820	0.14	+0.8
1,699,904	+		ABIE40_RS08820	0.14	-1.1
1,699,904	+		ABIE40_RS08820	0.14	+0.3
1,699,904	+		ABIE40_RS08820	0.14	+0.5
1,699,905	-		ABIE40_RS08820	0.14	+0.4
1,699,905	-		ABIE40_RS08820	0.14	-2.2
1,699,905	-		ABIE40_RS08820	0.14	+0.5
1,699,905	-		ABIE40_RS08820	0.14	+0.4
1,699,905	-		ABIE40_RS08820	0.14	-0.1
1,699,905	-		ABIE40_RS08820	0.14	+0.2
1,699,905	-		ABIE40_RS08820	0.14	-0.6
1,699,905	-		ABIE40_RS08820	0.14	+1.2
1,699,905	-		ABIE40_RS08820	0.14	-1.4
1,700,125	+		ABIE40_RS08820	0.33	-2.2
1,700,129	+		ABIE40_RS08820	0.33	-2.6
1,700,129	+		ABIE40_RS08820	0.33	+0.9
1,700,129	+		ABIE40_RS08820	0.33	+1.5
1,700,132	+		ABIE40_RS08820	0.34	+1.1
1,700,132	+		ABIE40_RS08820	0.34	+0.2
1,700,132	+		ABIE40_RS08820	0.34	-0.1
1,700,133	-		ABIE40_RS08820	0.34	-0.6
1,700,133	-		ABIE40_RS08820	0.34	+0.9
1,700,133	-		ABIE40_RS08820	0.34	+0.1
1,700,133	-		ABIE40_RS08820	0.34	+0.3
1,700,133	-		ABIE40_RS08820	0.34	+0.2
1,700,179	+		ABIE40_RS08820	0.37	+0.7
1,700,179	+		ABIE40_RS08820	0.37	+1.7
1,700,180	-		ABIE40_RS08820	0.38	-1.5
1,700,309	+		ABIE40_RS08820	0.48	+0.8
1,700,310	-		ABIE40_RS08820	0.48	-0.2
1,700,310	-		ABIE40_RS08820	0.48	-0.4
1,700,310	-		ABIE40_RS08820	0.48	+0.2
1,700,363	+		ABIE40_RS08820	0.53	+0.4