Experiment: R2A with 3-octanone 10.6206 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS29905 and ABIE40_RS29910 are separated by 102 nucleotides ABIE40_RS29910 and ABIE40_RS29915 overlap by 4 nucleotides ABIE40_RS29915 and ABIE40_RS29920 are separated by 500 nucleotides
ABIE40_RS29905: ABIE40_RS29905 - GntR family transcriptional regulator, at 673,289 to 674,020
_RS29905
ABIE40_RS29910: ABIE40_RS29910 - hypothetical protein, at 674,123 to 674,458
_RS29910
ABIE40_RS29915: ABIE40_RS29915 - hypothetical protein, at 674,455 to 674,814
_RS29915
ABIE40_RS29920: ABIE40_RS29920 - type IV toxin-antitoxin system AbiEi family antitoxin, at 675,315 to 676,106
_RS29920
Position (kb) 674
675 Strain fitness (log2 ratio) -2
-1
0
1
2 at 673.188 kb on - strand at 673.287 kb on + strand at 673.479 kb on + strand, within ABIE40_RS29905 at 673.479 kb on + strand, within ABIE40_RS29905 at 673.480 kb on - strand, within ABIE40_RS29905 at 673.480 kb on - strand, within ABIE40_RS29905 at 673.481 kb on + strand, within ABIE40_RS29905 at 673.481 kb on + strand, within ABIE40_RS29905 at 673.482 kb on - strand, within ABIE40_RS29905 at 673.584 kb on - strand, within ABIE40_RS29905 at 673.589 kb on + strand, within ABIE40_RS29905 at 673.589 kb on + strand, within ABIE40_RS29905 at 673.590 kb on - strand, within ABIE40_RS29905 at 673.590 kb on - strand, within ABIE40_RS29905 at 673.590 kb on - strand, within ABIE40_RS29905 at 673.591 kb on + strand, within ABIE40_RS29905 at 673.591 kb on + strand, within ABIE40_RS29905 at 673.591 kb on + strand, within ABIE40_RS29905 at 673.603 kb on + strand, within ABIE40_RS29905 at 673.604 kb on - strand, within ABIE40_RS29905 at 673.727 kb on + strand, within ABIE40_RS29905 at 673.727 kb on + strand, within ABIE40_RS29905 at 673.727 kb on + strand, within ABIE40_RS29905 at 673.727 kb on + strand, within ABIE40_RS29905 at 673.727 kb on + strand, within ABIE40_RS29905 at 673.728 kb on - strand, within ABIE40_RS29905 at 673.728 kb on - strand, within ABIE40_RS29905 at 673.739 kb on + strand, within ABIE40_RS29905 at 673.739 kb on + strand, within ABIE40_RS29905 at 673.772 kb on + strand, within ABIE40_RS29905 at 673.773 kb on - strand, within ABIE40_RS29905 at 673.773 kb on - strand, within ABIE40_RS29905 at 673.818 kb on - strand, within ABIE40_RS29905 at 673.976 kb on + strand at 673.976 kb on + strand at 673.976 kb on + strand at 674.019 kb on - strand at 674.184 kb on - strand, within ABIE40_RS29910 at 674.229 kb on - strand, within ABIE40_RS29910 at 674.249 kb on - strand, within ABIE40_RS29910 at 674.249 kb on - strand, within ABIE40_RS29910 at 674.404 kb on - strand, within ABIE40_RS29910 at 674.404 kb on - strand, within ABIE40_RS29910 at 674.404 kb on - strand, within ABIE40_RS29910 at 674.404 kb on - strand, within ABIE40_RS29910 at 674.559 kb on + strand, within ABIE40_RS29915 at 674.559 kb on + strand, within ABIE40_RS29915 at 674.592 kb on + strand, within ABIE40_RS29915 at 674.592 kb on + strand, within ABIE40_RS29915 at 674.592 kb on + strand, within ABIE40_RS29915 at 674.593 kb on - strand, within ABIE40_RS29915 at 674.593 kb on - strand, within ABIE40_RS29915 at 674.593 kb on - strand, within ABIE40_RS29915 at 674.692 kb on + strand, within ABIE40_RS29915 at 674.693 kb on - strand, within ABIE40_RS29915 at 674.952 kb on + strand at 674.952 kb on + strand at 674.953 kb on - strand at 674.953 kb on - strand at 674.953 kb on - strand at 674.953 kb on - strand at 675.052 kb on - strand at 675.131 kb on - strand at 675.131 kb on - strand at 675.154 kb on - strand at 675.156 kb on - strand at 675.216 kb on + strand at 675.217 kb on - strand at 675.225 kb on + strand at 675.306 kb on + strand at 675.319 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 10.6206 mM remove 673,188 - +0.5 673,287 + +0.2 673,479 + ABIE40_RS29905 0.26 +2.3 673,479 + ABIE40_RS29905 0.26 +0.3 673,480 - ABIE40_RS29905 0.26 -0.1 673,480 - ABIE40_RS29905 0.26 +0.5 673,481 + ABIE40_RS29905 0.26 -1.4 673,481 + ABIE40_RS29905 0.26 +0.3 673,482 - ABIE40_RS29905 0.26 +0.1 673,584 - ABIE40_RS29905 0.40 -0.3 673,589 + ABIE40_RS29905 0.41 +0.7 673,589 + ABIE40_RS29905 0.41 -1.4 673,590 - ABIE40_RS29905 0.41 -1.1 673,590 - ABIE40_RS29905 0.41 +1.0 673,590 - ABIE40_RS29905 0.41 +2.3 673,591 + ABIE40_RS29905 0.41 +0.1 673,591 + ABIE40_RS29905 0.41 -0.1 673,591 + ABIE40_RS29905 0.41 +0.7 673,603 + ABIE40_RS29905 0.43 -1.6 673,604 - ABIE40_RS29905 0.43 -0.5 673,727 + ABIE40_RS29905 0.60 +0.7 673,727 + ABIE40_RS29905 0.60 +0.5 673,727 + ABIE40_RS29905 0.60 -2.1 673,727 + ABIE40_RS29905 0.60 +0.7 673,727 + ABIE40_RS29905 0.60 +0.1 673,728 - ABIE40_RS29905 0.60 -0.7 673,728 - ABIE40_RS29905 0.60 +2.3 673,739 + ABIE40_RS29905 0.61 -2.1 673,739 + ABIE40_RS29905 0.61 -0.9 673,772 + ABIE40_RS29905 0.66 -0.9 673,773 - ABIE40_RS29905 0.66 +0.7 673,773 - ABIE40_RS29905 0.66 +0.7 673,818 - ABIE40_RS29905 0.72 +0.9 673,976 + -0.1 673,976 + +2.3 673,976 + -0.2 674,019 - +0.0 674,184 - ABIE40_RS29910 0.18 -1.0 674,229 - ABIE40_RS29910 0.32 -0.8 674,249 - ABIE40_RS29910 0.38 -1.2 674,249 - ABIE40_RS29910 0.38 +0.7 674,404 - ABIE40_RS29910 0.84 +0.3 674,404 - ABIE40_RS29910 0.84 +1.3 674,404 - ABIE40_RS29910 0.84 -1.3 674,404 - ABIE40_RS29910 0.84 +2.3 674,559 + ABIE40_RS29915 0.29 +1.5 674,559 + ABIE40_RS29915 0.29 +1.7 674,592 + ABIE40_RS29915 0.38 +1.0 674,592 + ABIE40_RS29915 0.38 -1.0 674,592 + ABIE40_RS29915 0.38 -0.3 674,593 - ABIE40_RS29915 0.38 -1.0 674,593 - ABIE40_RS29915 0.38 -2.2 674,593 - ABIE40_RS29915 0.38 +1.1 674,692 + ABIE40_RS29915 0.66 +1.7 674,693 - ABIE40_RS29915 0.66 -0.5 674,952 + -1.5 674,952 + -1.0 674,953 - +1.3 674,953 - +0.3 674,953 - +0.3 674,953 - +0.0 675,052 - -0.9 675,131 - -2.0 675,131 - -0.5 675,154 - -1.0 675,156 - -2.7 675,216 + +0.7 675,217 - -0.3 675,225 + +0.6 675,306 + -0.2 675,319 + -0.3
Or see this region's nucleotide sequence