Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS29625

Experiment: R2A with 3-octanone 10.6206 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS29615 and ABIE40_RS29620 overlap by 4 nucleotidesABIE40_RS29620 and ABIE40_RS29625 are separated by 24 nucleotidesABIE40_RS29625 and ABIE40_RS29630 overlap by 1 nucleotidesABIE40_RS29630 and ABIE40_RS29635 overlap by 8 nucleotides ABIE40_RS29615: ABIE40_RS29615 - dihydropyrimidinase, at 618,981 to 620,414 _RS29615 ABIE40_RS29620: ABIE40_RS29620 - SDR family oxidoreductase, at 620,411 to 621,169 _RS29620 ABIE40_RS29625: ABIE40_RS29625 - NAD(P)-dependent oxidoreductase, at 621,194 to 622,231 _RS29625 ABIE40_RS29630: ABIE40_RS29630 - allantoinase PuuE, at 622,231 to 623,139 _RS29630 ABIE40_RS29635: ABIE40_RS29635 - thiamine pyrophosphate-requiring protein, at 623,132 to 624,823 _RS29635 Position (kb) 621 622 623Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 620.242 kb on - strand, within ABIE40_RS29615at 620.250 kb on + strand, within ABIE40_RS29615at 620.251 kb on - strand, within ABIE40_RS29615at 620.251 kb on - strand, within ABIE40_RS29615at 620.251 kb on - strand, within ABIE40_RS29615at 620.442 kb on + strandat 620.443 kb on - strandat 620.515 kb on + strand, within ABIE40_RS29620at 620.515 kb on + strand, within ABIE40_RS29620at 620.516 kb on - strand, within ABIE40_RS29620at 620.516 kb on - strand, within ABIE40_RS29620at 620.516 kb on - strand, within ABIE40_RS29620at 620.518 kb on + strand, within ABIE40_RS29620at 620.518 kb on + strand, within ABIE40_RS29620at 620.519 kb on - strand, within ABIE40_RS29620at 620.609 kb on - strand, within ABIE40_RS29620at 620.678 kb on - strand, within ABIE40_RS29620at 620.798 kb on - strand, within ABIE40_RS29620at 620.877 kb on - strand, within ABIE40_RS29620at 620.944 kb on + strand, within ABIE40_RS29620at 620.944 kb on + strand, within ABIE40_RS29620at 621.156 kb on - strandat 621.349 kb on + strand, within ABIE40_RS29625at 621.357 kb on + strand, within ABIE40_RS29625at 621.357 kb on + strand, within ABIE40_RS29625at 621.368 kb on - strand, within ABIE40_RS29625at 621.368 kb on - strand, within ABIE40_RS29625at 621.659 kb on + strand, within ABIE40_RS29625at 621.660 kb on - strand, within ABIE40_RS29625at 621.660 kb on - strand, within ABIE40_RS29625at 621.695 kb on + strand, within ABIE40_RS29625at 621.695 kb on + strand, within ABIE40_RS29625at 621.695 kb on + strand, within ABIE40_RS29625at 621.894 kb on - strand, within ABIE40_RS29625at 621.894 kb on - strand, within ABIE40_RS29625at 621.894 kb on - strand, within ABIE40_RS29625at 621.966 kb on - strand, within ABIE40_RS29625at 621.966 kb on - strand, within ABIE40_RS29625at 621.966 kb on - strand, within ABIE40_RS29625at 621.966 kb on - strand, within ABIE40_RS29625at 621.966 kb on - strand, within ABIE40_RS29625at 621.970 kb on + strand, within ABIE40_RS29625at 622.027 kb on + strand, within ABIE40_RS29625at 622.027 kb on + strand, within ABIE40_RS29625at 622.028 kb on - strand, within ABIE40_RS29625at 622.038 kb on + strand, within ABIE40_RS29625at 622.115 kb on + strand, within ABIE40_RS29625at 622.116 kb on - strand, within ABIE40_RS29625at 622.116 kb on - strand, within ABIE40_RS29625at 622.116 kb on - strand, within ABIE40_RS29625at 622.184 kb on + strandat 622.184 kb on + strandat 622.185 kb on - strandat 622.185 kb on - strandat 622.185 kb on - strandat 622.342 kb on + strand, within ABIE40_RS29630at 622.402 kb on + strand, within ABIE40_RS29630at 622.402 kb on + strand, within ABIE40_RS29630at 622.402 kb on + strand, within ABIE40_RS29630at 622.403 kb on - strand, within ABIE40_RS29630at 622.403 kb on - strand, within ABIE40_RS29630at 622.403 kb on - strand, within ABIE40_RS29630at 622.405 kb on - strand, within ABIE40_RS29630at 622.407 kb on + strand, within ABIE40_RS29630at 622.507 kb on + strand, within ABIE40_RS29630at 622.783 kb on + strand, within ABIE40_RS29630at 622.786 kb on + strand, within ABIE40_RS29630at 622.885 kb on + strand, within ABIE40_RS29630at 622.903 kb on + strand, within ABIE40_RS29630at 622.951 kb on + strand, within ABIE40_RS29630at 622.951 kb on + strand, within ABIE40_RS29630at 622.953 kb on + strand, within ABIE40_RS29630at 622.953 kb on + strand, within ABIE40_RS29630at 622.954 kb on - strand, within ABIE40_RS29630at 622.954 kb on - strand, within ABIE40_RS29630at 622.954 kb on - strand, within ABIE40_RS29630at 623.004 kb on - strand, within ABIE40_RS29630at 623.004 kb on - strand, within ABIE40_RS29630at 623.107 kb on - strandat 623.140 kb on + strandat 623.141 kb on - strandat 623.141 kb on - strandat 623.141 kb on - strandat 623.141 kb on - strandat 623.147 kb on + strandat 623.147 kb on + strandat 623.148 kb on - strandat 623.148 kb on - strandat 623.148 kb on - strandat 623.205 kb on - strandat 623.205 kb on - strandat 623.206 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 10.6206 mM
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620,242 - ABIE40_RS29615 0.88 +0.5
620,250 + ABIE40_RS29615 0.88 +1.2
620,251 - ABIE40_RS29615 0.89 +1.2
620,251 - ABIE40_RS29615 0.89 -1.3
620,251 - ABIE40_RS29615 0.89 +1.9
620,442 + -1.8
620,443 - +0.3
620,515 + ABIE40_RS29620 0.14 +1.0
620,515 + ABIE40_RS29620 0.14 -1.8
620,516 - ABIE40_RS29620 0.14 -0.9
620,516 - ABIE40_RS29620 0.14 +0.3
620,516 - ABIE40_RS29620 0.14 -0.1
620,518 + ABIE40_RS29620 0.14 +0.5
620,518 + ABIE40_RS29620 0.14 +0.2
620,519 - ABIE40_RS29620 0.14 -1.7
620,609 - ABIE40_RS29620 0.26 +0.4
620,678 - ABIE40_RS29620 0.35 +0.8
620,798 - ABIE40_RS29620 0.51 +0.3
620,877 - ABIE40_RS29620 0.61 -1.6
620,944 + ABIE40_RS29620 0.70 -0.3
620,944 + ABIE40_RS29620 0.70 +1.7
621,156 - +1.1
621,349 + ABIE40_RS29625 0.15 -1.9
621,357 + ABIE40_RS29625 0.16 +0.2
621,357 + ABIE40_RS29625 0.16 -0.4
621,368 - ABIE40_RS29625 0.17 +0.4
621,368 - ABIE40_RS29625 0.17 +3.2
621,659 + ABIE40_RS29625 0.45 -0.1
621,660 - ABIE40_RS29625 0.45 +0.2
621,660 - ABIE40_RS29625 0.45 -2.5
621,695 + ABIE40_RS29625 0.48 +1.2
621,695 + ABIE40_RS29625 0.48 -2.1
621,695 + ABIE40_RS29625 0.48 +0.2
621,894 - ABIE40_RS29625 0.67 -0.3
621,894 - ABIE40_RS29625 0.67 +0.2
621,894 - ABIE40_RS29625 0.67 +1.2
621,966 - ABIE40_RS29625 0.74 -1.6
621,966 - ABIE40_RS29625 0.74 +0.9
621,966 - ABIE40_RS29625 0.74 +0.2
621,966 - ABIE40_RS29625 0.74 +0.1
621,966 - ABIE40_RS29625 0.74 -1.6
621,970 + ABIE40_RS29625 0.75 +1.2
622,027 + ABIE40_RS29625 0.80 -0.2
622,027 + ABIE40_RS29625 0.80 -0.5
622,028 - ABIE40_RS29625 0.80 -0.9
622,038 + ABIE40_RS29625 0.81 -0.8
622,115 + ABIE40_RS29625 0.89 +0.6
622,116 - ABIE40_RS29625 0.89 +0.3
622,116 - ABIE40_RS29625 0.89 +0.5
622,116 - ABIE40_RS29625 0.89 -1.9
622,184 + -0.9
622,184 + +0.4
622,185 - -1.8
622,185 - -1.6
622,185 - +3.5
622,342 + ABIE40_RS29630 0.12 +0.3
622,402 + ABIE40_RS29630 0.19 +2.2
622,402 + ABIE40_RS29630 0.19 +2.2
622,402 + ABIE40_RS29630 0.19 -3.1
622,403 - ABIE40_RS29630 0.19 -0.8
622,403 - ABIE40_RS29630 0.19 +0.6
622,403 - ABIE40_RS29630 0.19 +2.2
622,405 - ABIE40_RS29630 0.19 +1.2
622,407 + ABIE40_RS29630 0.19 +0.9
622,507 + ABIE40_RS29630 0.30 -0.6
622,783 + ABIE40_RS29630 0.61 -0.4
622,786 + ABIE40_RS29630 0.61 -0.4
622,885 + ABIE40_RS29630 0.72 -1.1
622,903 + ABIE40_RS29630 0.74 +2.2
622,951 + ABIE40_RS29630 0.79 +1.2
622,951 + ABIE40_RS29630 0.79 -2.2
622,953 + ABIE40_RS29630 0.79 -0.6
622,953 + ABIE40_RS29630 0.79 +2.2
622,954 - ABIE40_RS29630 0.80 +0.4
622,954 - ABIE40_RS29630 0.80 -0.1
622,954 - ABIE40_RS29630 0.80 -0.7
623,004 - ABIE40_RS29630 0.85 +2.2
623,004 - ABIE40_RS29630 0.85 +0.3
623,107 - -0.8
623,140 + -0.1
623,141 - -0.4
623,141 - -1.1
623,141 - -0.8
623,141 - -0.4
623,147 + +0.5
623,147 + +0.7
623,148 - +0.2
623,148 - -1.9
623,148 - +1.1
623,205 - -0.4
623,205 - +2.2
623,206 + -0.8

Or see this region's nucleotide sequence