Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS24630

Experiment: R2A with 3-octanone 10.6206 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with 3-octanone 10.6206 mM
1,075,843	+		ABIE40_RS24620	0.65	-0.6
1,075,843	+		ABIE40_RS24620	0.65	-0.9
1,076,370	+				+0.8
1,076,505	-				+0.4
1,076,550	-				+0.9
1,076,573	+				+0.1
1,076,573	+				-0.0
1,076,573	+				+0.1
1,076,573	+				-0.3
1,076,596	+				+0.0
1,077,037	+		ABIE40_RS24630	0.15	+0.1
1,077,037	+		ABIE40_RS24630	0.15	+0.4
1,077,037	+		ABIE40_RS24630	0.15	+0.1
1,077,037	+		ABIE40_RS24630	0.15	-0.2
1,077,038	-		ABIE40_RS24630	0.15	+0.6
1,077,038	-		ABIE40_RS24630	0.15	+1.6
1,077,038	-		ABIE40_RS24630	0.15	+2.7
1,077,047	+		ABIE40_RS24630	0.15	-0.4
1,077,048	-		ABIE40_RS24630	0.15	+0.7
1,077,098	+		ABIE40_RS24630	0.18	-0.5
1,077,099	-		ABIE40_RS24630	0.18	+0.2
1,077,100	+		ABIE40_RS24630	0.19	-1.7
1,077,100	+		ABIE40_RS24630	0.19	+0.2
1,077,101	-		ABIE40_RS24630	0.19	-0.0
1,077,101	-		ABIE40_RS24630	0.19	+0.4
1,077,101	-		ABIE40_RS24630	0.19	+0.4
1,077,101	-		ABIE40_RS24630	0.19	+1.0
1,077,107	-		ABIE40_RS24630	0.19	-0.2
1,077,107	-		ABIE40_RS24630	0.19	+1.1
1,077,268	+		ABIE40_RS24630	0.28	+1.3
1,077,268	+		ABIE40_RS24630	0.28	+0.1
1,077,268	+		ABIE40_RS24630	0.28	+1.1
1,077,268	+		ABIE40_RS24630	0.28	-1.6
1,077,269	-		ABIE40_RS24630	0.28	+2.1
1,077,269	-		ABIE40_RS24630	0.28	+1.1
1,077,279	-		ABIE40_RS24630	0.29	-3.3
1,077,318	-		ABIE40_RS24630	0.31	-0.2
1,077,338	-		ABIE40_RS24630	0.33	-1.5
1,077,338	-		ABIE40_RS24630	0.33	-1.0
1,077,580	+		ABIE40_RS24630	0.47	-0.2
1,077,580	+		ABIE40_RS24630	0.47	-1.2
1,077,581	-		ABIE40_RS24630	0.47	+0.3
1,077,874	+		ABIE40_RS24630	0.64	-0.5
1,077,874	+		ABIE40_RS24630	0.64	-0.6
1,077,875	-		ABIE40_RS24630	0.64	-2.8
1,077,910	+		ABIE40_RS24630	0.66	-3.3
1,077,910	+		ABIE40_RS24630	0.66	-3.3
1,077,910	+		ABIE40_RS24630	0.66	+0.9
1,077,910	+		ABIE40_RS24630	0.66	+0.5
1,077,910	+		ABIE40_RS24630	0.66	+0.6
1,077,910	+		ABIE40_RS24630	0.66	-0.6
1,077,910	+		ABIE40_RS24630	0.66	-2.1
1,077,910	+		ABIE40_RS24630	0.66	-0.5
1,077,910	+		ABIE40_RS24630	0.66	+1.2
1,077,911	-		ABIE40_RS24630	0.66	+3.1
1,077,911	-		ABIE40_RS24630	0.66	-1.5
1,077,911	-		ABIE40_RS24630	0.66	-0.1
1,077,911	-		ABIE40_RS24630	0.66	+0.1
1,077,911	-		ABIE40_RS24630	0.66	-0.1
1,077,911	-		ABIE40_RS24630	0.66	-1.2
1,077,911	-		ABIE40_RS24630	0.66	-1.3
1,077,911	-		ABIE40_RS24630	0.66	+0.1
1,077,911	-		ABIE40_RS24630	0.66	+1.1
1,077,911	-		ABIE40_RS24630	0.66	-0.7
1,077,911	-		ABIE40_RS24630	0.66	-0.4
1,077,950	-		ABIE40_RS24630	0.68	-2.0
1,077,968	+		ABIE40_RS24630	0.69	-0.3
1,077,968	+		ABIE40_RS24630	0.69	-1.2
1,077,968	+		ABIE40_RS24630	0.69	-0.5
1,077,969	-		ABIE40_RS24630	0.70	+1.5
1,077,969	-		ABIE40_RS24630	0.70	-0.6
1,078,095	-		ABIE40_RS24630	0.77	-0.4
1,078,099	+		ABIE40_RS24630	0.77	+1.5
1,078,123	+		ABIE40_RS24630	0.79	-1.4
1,078,124	-		ABIE40_RS24630	0.79	-1.9
1,078,124	-		ABIE40_RS24630	0.79	+0.7
1,078,208	+		ABIE40_RS24630	0.84	-1.5
1,078,208	+		ABIE40_RS24630	0.84	+0.4
1,078,208	+		ABIE40_RS24630	0.84	-0.4
1,078,210	+		ABIE40_RS24630	0.84	+1.8
1,078,210	+		ABIE40_RS24630	0.84	-1.3
1,078,210	+		ABIE40_RS24630	0.84	+0.1
1,078,210	+		ABIE40_RS24630	0.84	+0.1
1,078,210	+		ABIE40_RS24630	0.84	-0.2
1,078,211	-		ABIE40_RS24630	0.84	+0.0
1,078,211	-		ABIE40_RS24630	0.84	-2.1
1,078,211	-		ABIE40_RS24630	0.84	-0.4
1,078,244	-		ABIE40_RS24630	0.86	+2.1
1,078,244	-		ABIE40_RS24630	0.86	+0.5
1,078,291	+		ABIE40_RS24630	0.88	+0.1
1,078,291	+		ABIE40_RS24630	0.88	-1.3
1,078,292	-		ABIE40_RS24630	0.88	+0.5
1,078,292	-		ABIE40_RS24630	0.88	+1.9
1,078,292	-		ABIE40_RS24630	0.88	+0.5
1,078,292	-		ABIE40_RS24630	0.88	-0.9
1,078,292	-		ABIE40_RS24630	0.88	+1.1
1,078,292	-		ABIE40_RS24630	0.88	-0.1
1,078,339	+				+1.0
1,078,411	+				-0.6
1,078,412	-				-0.5
1,078,538	+		ABIE40_RS24635	0.22	+1.1
1,078,547	-		ABIE40_RS24635	0.32	-1.5
1,078,555	+		ABIE40_RS24635	0.41	+0.1
1,078,592	+		ABIE40_RS24635	0.82	+1.1
1,078,592	+		ABIE40_RS24635	0.82	+0.2
1,078,593	-		ABIE40_RS24635	0.83	-0.5
1,078,594	+		ABIE40_RS24635	0.84	+0.9
1,078,595	-		ABIE40_RS24635	0.86	+0.0
1,078,595	-		ABIE40_RS24635	0.86	+0.1
1,078,607	+				-0.8
1,078,608	-				-1.4
1,078,608	-				-1.0
1,078,645	+				-0.9
1,078,645	+				+1.4
1,078,646	-				-0.5
1,078,646	-				+0.9
1,078,647	+				-1.3
1,078,648	-				-0.2
1,078,778	-				+0.4
1,078,778	-				+1.9
1,078,823	+				-1.3
1,078,823	+				-0.3
1,078,823	+				+1.7
1,078,823	+				-1.3
1,078,824	-				+1.9
1,078,824	-				-0.9
1,078,840	-				-1.3
1,078,871	-				+0.8
1,078,882	-				+1.5
1,078,894	-				+2.1
1,078,894	-				-1.2
1,078,895	+				+1.2
1,078,895	+				-0.5
1,078,896	-				+2.1
1,078,974	+				+0.0
1,078,974	+				+1.0
1,078,974	+				-1.7
1,078,974	+				-0.9
1,078,974	+				-1.8
1,078,974	+				+0.7
1,078,974	+				+1.0
1,078,975	-				-0.0
1,078,976	+				+0.7
1,078,976	+				+1.0
1,078,976	+				-0.5
1,078,976	+				-0.1
1,078,976	+				+0.9
1,078,977	-				-1.9
1,079,006	-				+0.2
1,079,089	+				+0.8
1,079,138	+		ABIE40_RS24640	0.10	-2.4
1,079,138	+		ABIE40_RS24640	0.10	-0.8
1,079,139	-		ABIE40_RS24640	0.10	-1.0
1,079,139	-		ABIE40_RS24640	0.10	-0.1
1,079,169	+		ABIE40_RS24640	0.13	-0.2
1,079,169	+		ABIE40_RS24640	0.13	+0.6
1,079,170	-		ABIE40_RS24640	0.13	+0.8
1,079,172	+		ABIE40_RS24640	0.14	-1.0
1,079,172	+		ABIE40_RS24640	0.14	-0.3
1,079,173	-		ABIE40_RS24640	0.14	+4.5
1,079,173	-		ABIE40_RS24640	0.14	+2.1
1,079,173	-		ABIE40_RS24640	0.14	-1.1
1,079,174	+		ABIE40_RS24640	0.14	+0.8
1,079,174	+		ABIE40_RS24640	0.14	+1.3
1,079,175	-		ABIE40_RS24640	0.14	-1.5
1,079,175	-		ABIE40_RS24640	0.14	-2.5
1,079,175	-		ABIE40_RS24640	0.14	-0.9
1,079,175	-		ABIE40_RS24640	0.14	-1.6
1,079,175	-		ABIE40_RS24640	0.14	+0.2
1,079,349	+		ABIE40_RS24640	0.30	-1.2
1,079,349	+		ABIE40_RS24640	0.30	-0.5
1,079,349	+		ABIE40_RS24640	0.30	+0.2
1,079,349	+		ABIE40_RS24640	0.30	-0.1
1,079,349	+		ABIE40_RS24640	0.30	-0.0
1,079,349	+		ABIE40_RS24640	0.30	+0.2
1,079,349	+		ABIE40_RS24640	0.30	-1.0
1,079,349	+		ABIE40_RS24640	0.30	-0.2
1,079,349	+		ABIE40_RS24640	0.30	-2.2
1,079,349	+		ABIE40_RS24640	0.30	+0.3
1,079,349	+		ABIE40_RS24640	0.30	+0.5
1,079,349	+		ABIE40_RS24640	0.30	+0.5
1,079,349	+		ABIE40_RS24640	0.30	+0.3
1,079,349	+		ABIE40_RS24640	0.30	+1.5
1,079,350	-		ABIE40_RS24640	0.31	-3.3
1,079,350	-		ABIE40_RS24640	0.31	-1.4
1,079,350	-		ABIE40_RS24640	0.31	-0.9
1,079,350	-		ABIE40_RS24640	0.31	-0.4
1,079,350	-		ABIE40_RS24640	0.31	-0.1
1,079,350	-		ABIE40_RS24640	0.31	+1.5
1,079,350	-		ABIE40_RS24640	0.31	+0.8
1,079,350	-		ABIE40_RS24640	0.31	+0.8
1,079,350	-		ABIE40_RS24640	0.31	+0.1
1,079,350	-		ABIE40_RS24640	0.31	-1.4
1,079,350	-		ABIE40_RS24640	0.31	-0.7
1,079,350	-		ABIE40_RS24640	0.31	-0.0
1,079,350	-		ABIE40_RS24640	0.31	+0.6
1,079,350	-		ABIE40_RS24640	0.31	+0.3
1,079,350	-		ABIE40_RS24640	0.31	-1.0
1,079,350	-		ABIE40_RS24640	0.31	-1.4
1,079,351	+		ABIE40_RS24640	0.31	-0.3
1,079,351	+		ABIE40_RS24640	0.31	+0.3
1,079,351	+		ABIE40_RS24640	0.31	-0.9
1,079,352	-		ABIE40_RS24640	0.31	-1.0
1,079,352	-		ABIE40_RS24640	0.31	+0.2
1,079,352	-		ABIE40_RS24640	0.31	-0.5
1,079,352	-		ABIE40_RS24640	0.31	-1.0
1,079,352	-		ABIE40_RS24640	0.31	+0.3
1,079,352	-		ABIE40_RS24640	0.31	+1.1
1,079,352	-		ABIE40_RS24640	0.31	-0.9
1,079,434	-		ABIE40_RS24640	0.39	-0.7
1,079,435	+		ABIE40_RS24640	0.39	+0.1
1,079,435	+		ABIE40_RS24640	0.39	+0.5
1,079,435	+		ABIE40_RS24640	0.39	-2.4
1,079,435	+		ABIE40_RS24640	0.39	+0.0
1,079,436	-		ABIE40_RS24640	0.39	-0.1
1,079,436	-		ABIE40_RS24640	0.39	+3.1
1,079,436	-		ABIE40_RS24640	0.39	-1.8