Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS06455

Experiment: R2A with 3-octanone 10.6206 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS06450 and ABIE40_RS06455 are separated by 50 nucleotidesABIE40_RS06455 and ABIE40_RS06460 are separated by 242 nucleotides ABIE40_RS06450: ABIE40_RS06450 - ABC-F family ATP-binding cassette domain-containing protein, at 1,263,600 to 1,265,483 _RS06450 ABIE40_RS06455: ABIE40_RS06455 - GGDEF domain-containing protein, at 1,265,534 to 1,266,577 _RS06455 ABIE40_RS06460: ABIE40_RS06460 - glutathione S-transferase family protein, at 1,266,820 to 1,267,509 _RS06460 Position (kb) 1265 1266 1267Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1264.813 kb on + strand, within ABIE40_RS06450at 1264.814 kb on - strand, within ABIE40_RS06450at 1264.901 kb on + strand, within ABIE40_RS06450at 1264.921 kb on + strand, within ABIE40_RS06450at 1264.921 kb on + strand, within ABIE40_RS06450at 1264.921 kb on + strand, within ABIE40_RS06450at 1264.921 kb on + strand, within ABIE40_RS06450at 1264.921 kb on + strand, within ABIE40_RS06450at 1264.921 kb on + strand, within ABIE40_RS06450at 1264.921 kb on + strand, within ABIE40_RS06450at 1264.922 kb on - strand, within ABIE40_RS06450at 1264.922 kb on - strand, within ABIE40_RS06450at 1264.922 kb on - strand, within ABIE40_RS06450at 1264.922 kb on - strand, within ABIE40_RS06450at 1264.922 kb on - strand, within ABIE40_RS06450at 1264.957 kb on + strand, within ABIE40_RS06450at 1264.958 kb on - strand, within ABIE40_RS06450at 1264.958 kb on - strand, within ABIE40_RS06450at 1265.136 kb on - strand, within ABIE40_RS06450at 1265.471 kb on + strandat 1265.886 kb on + strand, within ABIE40_RS06455at 1265.886 kb on + strand, within ABIE40_RS06455at 1265.886 kb on + strand, within ABIE40_RS06455at 1265.887 kb on - strand, within ABIE40_RS06455at 1265.887 kb on - strand, within ABIE40_RS06455at 1265.961 kb on + strand, within ABIE40_RS06455at 1265.962 kb on - strand, within ABIE40_RS06455at 1266.147 kb on + strand, within ABIE40_RS06455at 1266.148 kb on - strand, within ABIE40_RS06455at 1266.237 kb on + strand, within ABIE40_RS06455at 1266.237 kb on + strand, within ABIE40_RS06455at 1266.237 kb on + strand, within ABIE40_RS06455at 1266.237 kb on + strand, within ABIE40_RS06455at 1266.238 kb on - strand, within ABIE40_RS06455at 1266.238 kb on - strand, within ABIE40_RS06455at 1266.238 kb on - strand, within ABIE40_RS06455at 1266.238 kb on - strand, within ABIE40_RS06455at 1266.456 kb on + strand, within ABIE40_RS06455at 1266.493 kb on + strandat 1266.493 kb on + strandat 1266.493 kb on + strandat 1266.493 kb on + strandat 1266.493 kb on + strandat 1266.493 kb on + strandat 1266.493 kb on + strandat 1266.494 kb on - strandat 1266.494 kb on - strandat 1266.494 kb on - strandat 1266.494 kb on - strandat 1266.618 kb on + strandat 1266.618 kb on + strandat 1266.618 kb on + strandat 1266.619 kb on - strandat 1266.619 kb on - strandat 1266.619 kb on - strandat 1266.630 kb on - strandat 1266.835 kb on + strandat 1266.836 kb on - strandat 1266.910 kb on - strand, within ABIE40_RS06460at 1266.910 kb on - strand, within ABIE40_RS06460at 1266.943 kb on + strand, within ABIE40_RS06460at 1266.943 kb on + strand, within ABIE40_RS06460at 1266.943 kb on + strand, within ABIE40_RS06460at 1266.943 kb on + strand, within ABIE40_RS06460at 1266.943 kb on + strand, within ABIE40_RS06460at 1266.943 kb on + strand, within ABIE40_RS06460at 1266.943 kb on + strand, within ABIE40_RS06460at 1266.943 kb on + strand, within ABIE40_RS06460at 1266.944 kb on - strand, within ABIE40_RS06460at 1266.944 kb on - strand, within ABIE40_RS06460at 1266.944 kb on - strand, within ABIE40_RS06460at 1267.042 kb on + strand, within ABIE40_RS06460at 1267.043 kb on - strand, within ABIE40_RS06460at 1267.057 kb on + strand, within ABIE40_RS06460at 1267.057 kb on + strand, within ABIE40_RS06460at 1267.057 kb on + strand, within ABIE40_RS06460at 1267.058 kb on - strand, within ABIE40_RS06460at 1267.058 kb on - strand, within ABIE40_RS06460at 1267.207 kb on + strand, within ABIE40_RS06460at 1267.208 kb on - strand, within ABIE40_RS06460at 1267.208 kb on - strand, within ABIE40_RS06460at 1267.208 kb on - strand, within ABIE40_RS06460at 1267.208 kb on - strand, within ABIE40_RS06460at 1267.208 kb on - strand, within ABIE40_RS06460at 1267.208 kb on - strand, within ABIE40_RS06460at 1267.369 kb on + strand, within ABIE40_RS06460at 1267.369 kb on + strand, within ABIE40_RS06460at 1267.369 kb on + strand, within ABIE40_RS06460at 1267.369 kb on + strand, within ABIE40_RS06460at 1267.370 kb on - strand, within ABIE40_RS06460at 1267.370 kb on - strand, within ABIE40_RS06460at 1267.370 kb on - strand, within ABIE40_RS06460at 1267.370 kb on - strand, within ABIE40_RS06460at 1267.370 kb on - strand, within ABIE40_RS06460at 1267.371 kb on + strand, within ABIE40_RS06460at 1267.371 kb on + strand, within ABIE40_RS06460at 1267.371 kb on + strand, within ABIE40_RS06460at 1267.371 kb on + strand, within ABIE40_RS06460at 1267.371 kb on + strand, within ABIE40_RS06460at 1267.371 kb on + strand, within ABIE40_RS06460at 1267.371 kb on + strand, within ABIE40_RS06460at 1267.372 kb on - strand, within ABIE40_RS06460at 1267.372 kb on - strand, within ABIE40_RS06460at 1267.372 kb on - strand, within ABIE40_RS06460at 1267.372 kb on - strand, within ABIE40_RS06460at 1267.372 kb on - strand, within ABIE40_RS06460

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 10.6206 mM
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1,264,813 + ABIE40_RS06450 0.64 +2.5
1,264,814 - ABIE40_RS06450 0.64 +0.9
1,264,901 + ABIE40_RS06450 0.69 +0.7
1,264,921 + ABIE40_RS06450 0.70 +1.0
1,264,921 + ABIE40_RS06450 0.70 +0.8
1,264,921 + ABIE40_RS06450 0.70 -2.0
1,264,921 + ABIE40_RS06450 0.70 +1.0
1,264,921 + ABIE40_RS06450 0.70 +0.1
1,264,921 + ABIE40_RS06450 0.70 -0.4
1,264,921 + ABIE40_RS06450 0.70 +0.3
1,264,922 - ABIE40_RS06450 0.70 -0.1
1,264,922 - ABIE40_RS06450 0.70 +0.2
1,264,922 - ABIE40_RS06450 0.70 +0.3
1,264,922 - ABIE40_RS06450 0.70 +0.6
1,264,922 - ABIE40_RS06450 0.70 -0.3
1,264,957 + ABIE40_RS06450 0.72 +0.7
1,264,958 - ABIE40_RS06450 0.72 +0.1
1,264,958 - ABIE40_RS06450 0.72 -0.1
1,265,136 - ABIE40_RS06450 0.82 +0.6
1,265,471 + -0.6
1,265,886 + ABIE40_RS06455 0.34 -0.6
1,265,886 + ABIE40_RS06455 0.34 -0.6
1,265,886 + ABIE40_RS06455 0.34 +0.3
1,265,887 - ABIE40_RS06455 0.34 -0.9
1,265,887 - ABIE40_RS06455 0.34 +1.1
1,265,961 + ABIE40_RS06455 0.41 +0.5
1,265,962 - ABIE40_RS06455 0.41 -1.2
1,266,147 + ABIE40_RS06455 0.59 -0.4
1,266,148 - ABIE40_RS06455 0.59 -1.2
1,266,237 + ABIE40_RS06455 0.67 -0.4
1,266,237 + ABIE40_RS06455 0.67 -0.6
1,266,237 + ABIE40_RS06455 0.67 -1.5
1,266,237 + ABIE40_RS06455 0.67 -3.4
1,266,238 - ABIE40_RS06455 0.67 -1.8
1,266,238 - ABIE40_RS06455 0.67 -1.6
1,266,238 - ABIE40_RS06455 0.67 -0.1
1,266,238 - ABIE40_RS06455 0.67 -0.9
1,266,456 + ABIE40_RS06455 0.88 -0.9
1,266,493 + +0.3
1,266,493 + -0.4
1,266,493 + -0.6
1,266,493 + +3.9
1,266,493 + -2.3
1,266,493 + -2.2
1,266,493 + -0.9
1,266,494 - -0.9
1,266,494 - -1.6
1,266,494 - -0.8
1,266,494 - -0.4
1,266,618 + +0.5
1,266,618 + +0.6
1,266,618 + -1.1
1,266,619 - +1.9
1,266,619 - +0.9
1,266,619 - -3.0
1,266,630 - -0.0
1,266,835 + +0.3
1,266,836 - -1.1
1,266,910 - ABIE40_RS06460 0.13 -0.2
1,266,910 - ABIE40_RS06460 0.13 +0.3
1,266,943 + ABIE40_RS06460 0.18 +0.9
1,266,943 + ABIE40_RS06460 0.18 +1.1
1,266,943 + ABIE40_RS06460 0.18 +2.4
1,266,943 + ABIE40_RS06460 0.18 +1.1
1,266,943 + ABIE40_RS06460 0.18 -0.3
1,266,943 + ABIE40_RS06460 0.18 -0.6
1,266,943 + ABIE40_RS06460 0.18 -0.2
1,266,943 + ABIE40_RS06460 0.18 -0.5
1,266,944 - ABIE40_RS06460 0.18 -0.1
1,266,944 - ABIE40_RS06460 0.18 -0.3
1,266,944 - ABIE40_RS06460 0.18 -2.4
1,267,042 + ABIE40_RS06460 0.32 -0.6
1,267,043 - ABIE40_RS06460 0.32 +0.9
1,267,057 + ABIE40_RS06460 0.34 +0.1
1,267,057 + ABIE40_RS06460 0.34 +0.6
1,267,057 + ABIE40_RS06460 0.34 -1.1
1,267,058 - ABIE40_RS06460 0.34 -0.5
1,267,058 - ABIE40_RS06460 0.34 -0.0
1,267,207 + ABIE40_RS06460 0.56 +0.5
1,267,208 - ABIE40_RS06460 0.56 -0.7
1,267,208 - ABIE40_RS06460 0.56 -0.1
1,267,208 - ABIE40_RS06460 0.56 -0.2
1,267,208 - ABIE40_RS06460 0.56 -1.0
1,267,208 - ABIE40_RS06460 0.56 -0.8
1,267,208 - ABIE40_RS06460 0.56 -1.3
1,267,369 + ABIE40_RS06460 0.80 +0.4
1,267,369 + ABIE40_RS06460 0.80 +0.2
1,267,369 + ABIE40_RS06460 0.80 -0.0
1,267,369 + ABIE40_RS06460 0.80 +0.4
1,267,370 - ABIE40_RS06460 0.80 -1.3
1,267,370 - ABIE40_RS06460 0.80 -0.4
1,267,370 - ABIE40_RS06460 0.80 -1.2
1,267,370 - ABIE40_RS06460 0.80 -0.1
1,267,370 - ABIE40_RS06460 0.80 -1.3
1,267,371 + ABIE40_RS06460 0.80 -1.3
1,267,371 + ABIE40_RS06460 0.80 +0.1
1,267,371 + ABIE40_RS06460 0.80 -0.5
1,267,371 + ABIE40_RS06460 0.80 +0.9
1,267,371 + ABIE40_RS06460 0.80 +2.5
1,267,371 + ABIE40_RS06460 0.80 -1.1
1,267,371 + ABIE40_RS06460 0.80 +0.5
1,267,372 - ABIE40_RS06460 0.80 +0.2
1,267,372 - ABIE40_RS06460 0.80 -1.2
1,267,372 - ABIE40_RS06460 0.80 -0.4
1,267,372 - ABIE40_RS06460 0.80 -0.1
1,267,372 - ABIE40_RS06460 0.80 +0.5

Or see this region's nucleotide sequence