Experiment: R2A with 3-octanone 10.6206 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS02845 and ABIE40_RS02850 are separated by 79 nucleotides ABIE40_RS02850 and ABIE40_RS02855 overlap by 4 nucleotides ABIE40_RS02855 and ABIE40_RS02860 are separated by 647 nucleotides
ABIE40_RS02845: ABIE40_RS02845 - YbaL family putative K(+) efflux transporter, at 562,430 to 564,247
_RS02845
ABIE40_RS02850: ABIE40_RS02850 - helix-turn-helix transcriptional regulator, at 564,327 to 564,590
_RS02850
ABIE40_RS02855: ABIE40_RS02855 - glycosyltransferase family 39 protein, at 564,587 to 566,014
_RS02855
ABIE40_RS02860: ABIE40_RS02860 - globin-coupled sensor protein, at 566,662 to 568,290
_RS02860
Position (kb) 564
565
566
567 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 564.099 kb on + strand at 564.109 kb on + strand at 564.109 kb on + strand at 564.109 kb on + strand at 564.110 kb on - strand at 564.110 kb on - strand at 564.141 kb on + strand at 564.141 kb on + strand at 564.141 kb on + strand at 564.267 kb on - strand at 564.288 kb on + strand at 564.288 kb on + strand at 564.289 kb on - strand at 564.289 kb on - strand at 564.290 kb on + strand at 564.291 kb on - strand at 564.297 kb on + strand at 564.297 kb on + strand at 564.310 kb on - strand at 564.368 kb on - strand, within ABIE40_RS02850 at 564.453 kb on + strand, within ABIE40_RS02850 at 564.453 kb on + strand, within ABIE40_RS02850 at 564.453 kb on + strand, within ABIE40_RS02850 at 564.453 kb on + strand, within ABIE40_RS02850 at 564.453 kb on + strand, within ABIE40_RS02850 at 564.453 kb on + strand, within ABIE40_RS02850 at 564.454 kb on - strand, within ABIE40_RS02850 at 564.454 kb on - strand, within ABIE40_RS02850 at 564.454 kb on - strand, within ABIE40_RS02850 at 564.588 kb on + strand at 564.625 kb on - strand at 564.630 kb on + strand at 564.631 kb on - strand at 564.631 kb on - strand at 564.631 kb on - strand at 564.648 kb on + strand at 564.648 kb on + strand at 564.651 kb on + strand at 564.651 kb on + strand at 564.706 kb on + strand at 564.707 kb on - strand at 564.707 kb on - strand at 564.707 kb on - strand at 564.707 kb on - strand at 564.774 kb on + strand, within ABIE40_RS02855 at 564.774 kb on + strand, within ABIE40_RS02855 at 564.774 kb on + strand, within ABIE40_RS02855 at 564.774 kb on + strand, within ABIE40_RS02855 at 564.774 kb on + strand, within ABIE40_RS02855 at 564.774 kb on + strand, within ABIE40_RS02855 at 564.775 kb on - strand, within ABIE40_RS02855 at 564.775 kb on - strand, within ABIE40_RS02855 at 564.777 kb on + strand, within ABIE40_RS02855 at 564.777 kb on + strand, within ABIE40_RS02855 at 564.777 kb on + strand, within ABIE40_RS02855 at 564.777 kb on + strand, within ABIE40_RS02855 at 564.777 kb on + strand, within ABIE40_RS02855 at 564.777 kb on + strand, within ABIE40_RS02855 at 564.777 kb on + strand, within ABIE40_RS02855 at 564.778 kb on - strand, within ABIE40_RS02855 at 564.778 kb on - strand, within ABIE40_RS02855 at 564.778 kb on - strand, within ABIE40_RS02855 at 564.810 kb on + strand, within ABIE40_RS02855 at 564.811 kb on - strand, within ABIE40_RS02855 at 564.811 kb on - strand, within ABIE40_RS02855 at 564.811 kb on - strand, within ABIE40_RS02855 at 564.811 kb on - strand, within ABIE40_RS02855 at 564.811 kb on - strand, within ABIE40_RS02855 at 564.811 kb on - strand, within ABIE40_RS02855 at 564.811 kb on - strand, within ABIE40_RS02855 at 564.811 kb on - strand, within ABIE40_RS02855 at 564.811 kb on - strand, within ABIE40_RS02855 at 564.946 kb on - strand, within ABIE40_RS02855 at 564.946 kb on - strand, within ABIE40_RS02855 at 565.110 kb on + strand, within ABIE40_RS02855 at 565.110 kb on + strand, within ABIE40_RS02855 at 565.110 kb on + strand, within ABIE40_RS02855 at 565.110 kb on + strand, within ABIE40_RS02855 at 565.111 kb on - strand, within ABIE40_RS02855 at 565.111 kb on - strand, within ABIE40_RS02855 at 565.111 kb on - strand, within ABIE40_RS02855 at 565.111 kb on - strand, within ABIE40_RS02855 at 565.111 kb on - strand, within ABIE40_RS02855 at 565.111 kb on - strand, within ABIE40_RS02855 at 565.442 kb on - strand, within ABIE40_RS02855 at 565.524 kb on + strand, within ABIE40_RS02855 at 565.524 kb on + strand, within ABIE40_RS02855 at 565.605 kb on + strand, within ABIE40_RS02855 at 565.605 kb on + strand, within ABIE40_RS02855 at 565.605 kb on + strand, within ABIE40_RS02855 at 565.606 kb on - strand, within ABIE40_RS02855 at 565.606 kb on - strand, within ABIE40_RS02855 at 565.606 kb on - strand, within ABIE40_RS02855 at 565.695 kb on + strand, within ABIE40_RS02855 at 565.695 kb on + strand, within ABIE40_RS02855 at 565.695 kb on + strand, within ABIE40_RS02855 at 565.695 kb on + strand, within ABIE40_RS02855 at 565.695 kb on + strand, within ABIE40_RS02855 at 565.695 kb on + strand, within ABIE40_RS02855 at 565.695 kb on + strand, within ABIE40_RS02855 at 565.695 kb on + strand, within ABIE40_RS02855 at 565.695 kb on + strand, within ABIE40_RS02855 at 565.695 kb on + strand, within ABIE40_RS02855 at 565.695 kb on + strand, within ABIE40_RS02855 at 565.696 kb on - strand, within ABIE40_RS02855 at 565.696 kb on - strand, within ABIE40_RS02855 at 565.696 kb on - strand, within ABIE40_RS02855 at 565.696 kb on - strand, within ABIE40_RS02855 at 565.696 kb on - strand, within ABIE40_RS02855 at 565.696 kb on - strand, within ABIE40_RS02855 at 565.696 kb on - strand, within ABIE40_RS02855 at 565.696 kb on - strand, within ABIE40_RS02855 at 565.696 kb on - strand, within ABIE40_RS02855 at 565.696 kb on - strand, within ABIE40_RS02855 at 565.696 kb on - strand, within ABIE40_RS02855 at 565.831 kb on - strand, within ABIE40_RS02855 at 565.878 kb on + strand at 565.912 kb on - strand at 565.912 kb on - strand at 566.014 kb on + strand at 566.014 kb on + strand at 566.014 kb on + strand at 566.014 kb on + strand at 566.014 kb on + strand at 566.014 kb on + strand at 566.014 kb on + strand at 566.014 kb on + strand at 566.014 kb on + strand at 566.015 kb on - strand at 566.015 kb on - strand at 566.015 kb on - strand at 566.015 kb on - strand at 566.015 kb on - strand at 566.015 kb on - strand at 566.015 kb on - strand at 566.015 kb on - strand at 566.015 kb on - strand at 566.015 kb on - strand at 566.016 kb on + strand at 566.016 kb on + strand at 566.016 kb on + strand at 566.016 kb on + strand at 566.016 kb on + strand at 566.017 kb on - strand at 566.017 kb on - strand at 566.017 kb on - strand at 566.017 kb on - strand at 566.017 kb on - strand at 566.017 kb on - strand at 566.017 kb on - strand at 566.017 kb on - strand at 566.017 kb on - strand at 566.046 kb on + strand at 566.047 kb on - strand at 566.047 kb on - strand at 566.047 kb on - strand at 566.095 kb on + strand at 566.235 kb on + strand at 566.249 kb on - strand at 566.262 kb on + strand at 566.263 kb on - strand at 566.263 kb on - strand at 566.273 kb on + strand at 566.274 kb on - strand at 566.275 kb on + strand at 566.326 kb on - strand at 566.383 kb on + strand at 566.408 kb on + strand at 566.409 kb on - strand at 566.409 kb on - strand at 566.409 kb on - strand at 566.409 kb on - strand at 566.420 kb on + strand at 566.420 kb on + strand at 566.421 kb on - strand at 566.421 kb on - strand at 566.421 kb on - strand at 566.421 kb on - strand at 566.550 kb on + strand at 566.551 kb on - strand at 566.551 kb on - strand at 566.645 kb on - strand at 566.661 kb on + strand at 566.662 kb on - strand at 566.662 kb on - strand at 566.662 kb on - strand at 566.662 kb on - strand at 566.662 kb on - strand at 566.662 kb on - strand at 566.662 kb on - strand at 566.935 kb on + strand, within ABIE40_RS02860 at 566.935 kb on + strand, within ABIE40_RS02860 at 566.936 kb on - strand, within ABIE40_RS02860 at 566.936 kb on - strand, within ABIE40_RS02860
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 10.6206 mM remove 564,099 + -1.6 564,109 + -1.4 564,109 + -0.8 564,109 + -0.4 564,110 - -0.8 564,110 - +0.9 564,141 + -0.9 564,141 + -0.7 564,141 + -0.2 564,267 - -0.8 564,288 + -0.5 564,288 + -0.5 564,289 - -0.2 564,289 - +0.8 564,290 + -0.3 564,291 - -0.6 564,297 + +0.2 564,297 + -0.5 564,310 - +2.4 564,368 - ABIE40_RS02850 0.16 -0.6 564,453 + ABIE40_RS02850 0.48 -1.3 564,453 + ABIE40_RS02850 0.48 -0.9 564,453 + ABIE40_RS02850 0.48 -0.2 564,453 + ABIE40_RS02850 0.48 -1.6 564,453 + ABIE40_RS02850 0.48 -1.3 564,453 + ABIE40_RS02850 0.48 -0.9 564,454 - ABIE40_RS02850 0.48 -1.2 564,454 - ABIE40_RS02850 0.48 -1.0 564,454 - ABIE40_RS02850 0.48 +1.8 564,588 + -1.5 564,625 - -3.2 564,630 + -1.6 564,631 - +0.1 564,631 - -1.2 564,631 - -0.1 564,648 + -5.2 564,648 + -3.5 564,651 + -0.9 564,651 + -4.6 564,706 + -4.1 564,707 - -0.2 564,707 - -5.6 564,707 - -2.9 564,707 - -5.6 564,774 + ABIE40_RS02855 0.13 -4.3 564,774 + ABIE40_RS02855 0.13 -3.0 564,774 + ABIE40_RS02855 0.13 -1.5 564,774 + ABIE40_RS02855 0.13 -4.5 564,774 + ABIE40_RS02855 0.13 -6.5 564,774 + ABIE40_RS02855 0.13 -5.2 564,775 - ABIE40_RS02855 0.13 -3.4 564,775 - ABIE40_RS02855 0.13 -3.0 564,777 + ABIE40_RS02855 0.13 -2.4 564,777 + ABIE40_RS02855 0.13 +0.4 564,777 + ABIE40_RS02855 0.13 -3.9 564,777 + ABIE40_RS02855 0.13 -2.8 564,777 + ABIE40_RS02855 0.13 -2.9 564,777 + ABIE40_RS02855 0.13 -3.6 564,777 + ABIE40_RS02855 0.13 -2.0 564,778 - ABIE40_RS02855 0.13 -2.0 564,778 - ABIE40_RS02855 0.13 -3.3 564,778 - ABIE40_RS02855 0.13 -0.8 564,810 + ABIE40_RS02855 0.16 -1.9 564,811 - ABIE40_RS02855 0.16 -3.2 564,811 - ABIE40_RS02855 0.16 -2.4 564,811 - ABIE40_RS02855 0.16 -3.0 564,811 - ABIE40_RS02855 0.16 -4.0 564,811 - ABIE40_RS02855 0.16 -3.3 564,811 - ABIE40_RS02855 0.16 -4.2 564,811 - ABIE40_RS02855 0.16 -4.4 564,811 - ABIE40_RS02855 0.16 -3.3 564,811 - ABIE40_RS02855 0.16 -1.6 564,946 - ABIE40_RS02855 0.25 -1.6 564,946 - ABIE40_RS02855 0.25 -4.1 565,110 + ABIE40_RS02855 0.37 -2.2 565,110 + ABIE40_RS02855 0.37 -4.8 565,110 + ABIE40_RS02855 0.37 -0.8 565,110 + ABIE40_RS02855 0.37 -4.9 565,111 - ABIE40_RS02855 0.37 -5.5 565,111 - ABIE40_RS02855 0.37 -3.0 565,111 - ABIE40_RS02855 0.37 -4.5 565,111 - ABIE40_RS02855 0.37 -3.0 565,111 - ABIE40_RS02855 0.37 -0.8 565,111 - ABIE40_RS02855 0.37 -3.2 565,442 - ABIE40_RS02855 0.60 -3.0 565,524 + ABIE40_RS02855 0.66 -3.9 565,524 + ABIE40_RS02855 0.66 -1.8 565,605 + ABIE40_RS02855 0.71 -5.2 565,605 + ABIE40_RS02855 0.71 -5.8 565,605 + ABIE40_RS02855 0.71 -3.9 565,606 - ABIE40_RS02855 0.71 -4.1 565,606 - ABIE40_RS02855 0.71 -3.7 565,606 - ABIE40_RS02855 0.71 -2.7 565,695 + ABIE40_RS02855 0.78 -1.0 565,695 + ABIE40_RS02855 0.78 -4.0 565,695 + ABIE40_RS02855 0.78 -1.9 565,695 + ABIE40_RS02855 0.78 -4.3 565,695 + ABIE40_RS02855 0.78 -4.7 565,695 + ABIE40_RS02855 0.78 -2.6 565,695 + ABIE40_RS02855 0.78 -1.0 565,695 + ABIE40_RS02855 0.78 -4.3 565,695 + ABIE40_RS02855 0.78 -4.8 565,695 + ABIE40_RS02855 0.78 -5.3 565,695 + ABIE40_RS02855 0.78 -1.7 565,696 - ABIE40_RS02855 0.78 -4.7 565,696 - ABIE40_RS02855 0.78 -4.2 565,696 - ABIE40_RS02855 0.78 -2.3 565,696 - ABIE40_RS02855 0.78 -3.1 565,696 - ABIE40_RS02855 0.78 -3.7 565,696 - ABIE40_RS02855 0.78 -2.1 565,696 - ABIE40_RS02855 0.78 -6.0 565,696 - ABIE40_RS02855 0.78 -1.9 565,696 - ABIE40_RS02855 0.78 +0.1 565,696 - ABIE40_RS02855 0.78 -1.4 565,696 - ABIE40_RS02855 0.78 -3.8 565,831 - ABIE40_RS02855 0.87 -3.5 565,878 + -5.3 565,912 - -2.3 565,912 - -2.0 566,014 + -3.0 566,014 + -1.9 566,014 + -3.9 566,014 + -0.0 566,014 + -3.1 566,014 + -3.6 566,014 + -2.6 566,014 + -2.8 566,014 + -2.1 566,015 - -1.7 566,015 - -0.7 566,015 - -0.6 566,015 - -0.6 566,015 - -0.9 566,015 - +0.2 566,015 - -0.0 566,015 - -0.9 566,015 - +1.8 566,015 - -0.1 566,016 + -0.8 566,016 + -1.4 566,016 + -4.7 566,016 + -2.7 566,016 + -3.8 566,017 - -0.2 566,017 - -0.9 566,017 - -0.8 566,017 - +0.5 566,017 - -0.4 566,017 - -0.6 566,017 - -0.2 566,017 - -0.5 566,017 - +1.4 566,046 + -2.5 566,047 - +0.1 566,047 - +0.8 566,047 - +0.4 566,095 + +0.8 566,235 + -1.6 566,249 - -1.0 566,262 + -2.8 566,263 - +0.2 566,263 - +0.2 566,273 + -1.2 566,274 - +0.1 566,275 + -3.0 566,326 - -0.6 566,383 + -0.5 566,408 + -1.0 566,409 - +1.8 566,409 - -1.0 566,409 - -0.2 566,409 - -1.0 566,420 + -1.3 566,420 + +3.1 566,421 - -0.2 566,421 - -0.5 566,421 - -0.1 566,421 - -1.2 566,550 + -0.7 566,551 - -0.3 566,551 - +1.0 566,645 - -0.9 566,661 + -1.0 566,662 - -1.8 566,662 - +0.7 566,662 - -0.4 566,662 - -0.8 566,662 - -3.5 566,662 - +0.6 566,662 - +1.1 566,935 + ABIE40_RS02860 0.17 +2.2 566,935 + ABIE40_RS02860 0.17 -2.3 566,936 - ABIE40_RS02860 0.17 -1.0 566,936 - ABIE40_RS02860 0.17 -1.5
Or see this region's nucleotide sequence