Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS00650

Experiment: R2A with 3-octanone 10.6206 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS00645 and ABIE40_RS00650 are separated by 5 nucleotidesABIE40_RS00650 and ABIE40_RS00655 are separated by 391 nucleotides ABIE40_RS00645: ABIE40_RS00645 - nicotinate phosphoribosyltransferase, at 133,251 to 134,555 _RS00645 ABIE40_RS00650: ABIE40_RS00650 - DUF2735 domain-containing protein, at 134,561 to 134,755 _RS00650 ABIE40_RS00655: ABIE40_RS00655 - glutamine synthetase beta-grasp domain-containing protein, at 135,147 to 136,187 _RS00655 Position (kb) 134 135Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 133.599 kb on + strand, within ABIE40_RS00645at 133.626 kb on + strand, within ABIE40_RS00645at 133.626 kb on + strand, within ABIE40_RS00645at 133.626 kb on + strand, within ABIE40_RS00645at 133.626 kb on + strand, within ABIE40_RS00645at 133.627 kb on - strand, within ABIE40_RS00645at 133.627 kb on - strand, within ABIE40_RS00645at 133.627 kb on - strand, within ABIE40_RS00645at 133.627 kb on - strand, within ABIE40_RS00645at 133.663 kb on - strand, within ABIE40_RS00645at 133.755 kb on + strand, within ABIE40_RS00645at 133.755 kb on + strand, within ABIE40_RS00645at 133.755 kb on + strand, within ABIE40_RS00645at 133.755 kb on + strand, within ABIE40_RS00645at 133.755 kb on + strand, within ABIE40_RS00645at 133.756 kb on - strand, within ABIE40_RS00645at 133.895 kb on + strand, within ABIE40_RS00645at 133.953 kb on - strand, within ABIE40_RS00645at 134.037 kb on + strand, within ABIE40_RS00645at 134.037 kb on + strand, within ABIE40_RS00645at 134.037 kb on + strand, within ABIE40_RS00645at 134.038 kb on - strand, within ABIE40_RS00645at 134.067 kb on + strand, within ABIE40_RS00645at 134.067 kb on + strand, within ABIE40_RS00645at 134.067 kb on + strand, within ABIE40_RS00645at 134.067 kb on + strand, within ABIE40_RS00645at 134.067 kb on + strand, within ABIE40_RS00645at 134.068 kb on - strand, within ABIE40_RS00645at 134.068 kb on - strand, within ABIE40_RS00645at 134.068 kb on - strand, within ABIE40_RS00645at 134.068 kb on - strand, within ABIE40_RS00645at 134.295 kb on + strand, within ABIE40_RS00645at 134.295 kb on + strand, within ABIE40_RS00645at 134.295 kb on + strand, within ABIE40_RS00645at 134.295 kb on + strand, within ABIE40_RS00645at 134.295 kb on + strand, within ABIE40_RS00645at 134.295 kb on + strand, within ABIE40_RS00645at 134.295 kb on + strand, within ABIE40_RS00645at 134.295 kb on + strand, within ABIE40_RS00645at 134.296 kb on - strand, within ABIE40_RS00645at 134.296 kb on - strand, within ABIE40_RS00645at 134.296 kb on - strand, within ABIE40_RS00645at 134.296 kb on - strand, within ABIE40_RS00645at 134.616 kb on + strand, within ABIE40_RS00650at 134.616 kb on + strand, within ABIE40_RS00650at 134.617 kb on - strand, within ABIE40_RS00650at 134.617 kb on - strand, within ABIE40_RS00650at 134.718 kb on + strand, within ABIE40_RS00650at 134.758 kb on + strandat 134.759 kb on - strandat 134.759 kb on - strandat 134.771 kb on + strandat 134.772 kb on - strandat 134.775 kb on + strandat 134.775 kb on + strandat 134.775 kb on + strandat 134.776 kb on - strandat 134.776 kb on - strandat 134.776 kb on - strandat 134.776 kb on - strandat 134.781 kb on + strandat 134.802 kb on + strandat 134.803 kb on - strandat 134.842 kb on + strandat 134.867 kb on - strandat 135.068 kb on + strandat 135.080 kb on - strandat 135.080 kb on - strandat 135.156 kb on + strandat 135.156 kb on + strandat 135.156 kb on + strandat 135.156 kb on + strandat 135.156 kb on + strandat 135.156 kb on + strandat 135.156 kb on + strandat 135.157 kb on - strandat 135.157 kb on - strandat 135.157 kb on - strandat 135.157 kb on - strandat 135.159 kb on - strandat 135.159 kb on - strandat 135.159 kb on - strandat 135.169 kb on - strandat 135.186 kb on + strandat 135.187 kb on - strandat 135.187 kb on - strandat 135.187 kb on - strandat 135.187 kb on - strandat 135.197 kb on - strandat 135.342 kb on + strand, within ABIE40_RS00655at 135.389 kb on + strand, within ABIE40_RS00655at 135.389 kb on + strand, within ABIE40_RS00655at 135.390 kb on - strand, within ABIE40_RS00655at 135.390 kb on - strand, within ABIE40_RS00655at 135.408 kb on - strand, within ABIE40_RS00655at 135.481 kb on - strand, within ABIE40_RS00655at 135.481 kb on - strand, within ABIE40_RS00655at 135.489 kb on + strand, within ABIE40_RS00655at 135.489 kb on + strand, within ABIE40_RS00655at 135.549 kb on + strand, within ABIE40_RS00655at 135.549 kb on + strand, within ABIE40_RS00655at 135.549 kb on + strand, within ABIE40_RS00655at 135.549 kb on + strand, within ABIE40_RS00655at 135.552 kb on + strand, within ABIE40_RS00655at 135.553 kb on - strand, within ABIE40_RS00655at 135.553 kb on - strand, within ABIE40_RS00655at 135.638 kb on + strand, within ABIE40_RS00655at 135.638 kb on + strand, within ABIE40_RS00655at 135.741 kb on + strand, within ABIE40_RS00655at 135.741 kb on + strand, within ABIE40_RS00655at 135.742 kb on - strand, within ABIE40_RS00655at 135.742 kb on - strand, within ABIE40_RS00655at 135.742 kb on - strand, within ABIE40_RS00655at 135.742 kb on - strand, within ABIE40_RS00655

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 10.6206 mM
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133,599 + ABIE40_RS00645 0.27 +0.9
133,626 + ABIE40_RS00645 0.29 -0.9
133,626 + ABIE40_RS00645 0.29 -0.2
133,626 + ABIE40_RS00645 0.29 -1.0
133,626 + ABIE40_RS00645 0.29 -1.6
133,627 - ABIE40_RS00645 0.29 -0.5
133,627 - ABIE40_RS00645 0.29 -0.9
133,627 - ABIE40_RS00645 0.29 -0.8
133,627 - ABIE40_RS00645 0.29 -0.5
133,663 - ABIE40_RS00645 0.32 -2.2
133,755 + ABIE40_RS00645 0.39 +0.7
133,755 + ABIE40_RS00645 0.39 +0.1
133,755 + ABIE40_RS00645 0.39 -0.3
133,755 + ABIE40_RS00645 0.39 -0.3
133,755 + ABIE40_RS00645 0.39 -0.6
133,756 - ABIE40_RS00645 0.39 +0.4
133,895 + ABIE40_RS00645 0.49 -3.5
133,953 - ABIE40_RS00645 0.54 -2.0
134,037 + ABIE40_RS00645 0.60 -2.7
134,037 + ABIE40_RS00645 0.60 -0.9
134,037 + ABIE40_RS00645 0.60 -1.7
134,038 - ABIE40_RS00645 0.60 +0.3
134,067 + ABIE40_RS00645 0.63 +1.7
134,067 + ABIE40_RS00645 0.63 -0.3
134,067 + ABIE40_RS00645 0.63 -1.1
134,067 + ABIE40_RS00645 0.63 -0.8
134,067 + ABIE40_RS00645 0.63 -1.3
134,068 - ABIE40_RS00645 0.63 +0.1
134,068 - ABIE40_RS00645 0.63 -1.0
134,068 - ABIE40_RS00645 0.63 -2.9
134,068 - ABIE40_RS00645 0.63 -0.3
134,295 + ABIE40_RS00645 0.80 -2.0
134,295 + ABIE40_RS00645 0.80 +0.1
134,295 + ABIE40_RS00645 0.80 -1.1
134,295 + ABIE40_RS00645 0.80 -1.6
134,295 + ABIE40_RS00645 0.80 -1.1
134,295 + ABIE40_RS00645 0.80 -1.0
134,295 + ABIE40_RS00645 0.80 +0.7
134,295 + ABIE40_RS00645 0.80 -2.4
134,296 - ABIE40_RS00645 0.80 -0.4
134,296 - ABIE40_RS00645 0.80 -1.4
134,296 - ABIE40_RS00645 0.80 -0.9
134,296 - ABIE40_RS00645 0.80 -1.1
134,616 + ABIE40_RS00650 0.28 -2.3
134,616 + ABIE40_RS00650 0.28 -1.0
134,617 - ABIE40_RS00650 0.29 -1.6
134,617 - ABIE40_RS00650 0.29 -2.7
134,718 + ABIE40_RS00650 0.81 -1.1
134,758 + -1.4
134,759 - -0.0
134,759 - +0.7
134,771 + -1.3
134,772 - +0.5
134,775 + -3.6
134,775 + +1.3
134,775 + -0.8
134,776 - +0.5
134,776 - +0.0
134,776 - -1.9
134,776 - -1.5
134,781 + -1.4
134,802 + -0.6
134,803 - -1.8
134,842 + +1.1
134,867 - +0.5
135,068 + -1.7
135,080 - -2.2
135,080 - +3.3
135,156 + -1.6
135,156 + +0.9
135,156 + -0.6
135,156 + -1.1
135,156 + +0.2
135,156 + +1.4
135,156 + -1.5
135,157 - -0.3
135,157 - +1.4
135,157 - +1.7
135,157 - -0.3
135,159 - -0.3
135,159 - +0.9
135,159 - -2.1
135,169 - +0.1
135,186 + -2.1
135,187 - -0.8
135,187 - +1.1
135,187 - -1.1
135,187 - -1.1
135,197 - -0.3
135,342 + ABIE40_RS00655 0.19 +0.7
135,389 + ABIE40_RS00655 0.23 -0.1
135,389 + ABIE40_RS00655 0.23 -1.6
135,390 - ABIE40_RS00655 0.23 -0.1
135,390 - ABIE40_RS00655 0.23 -0.8
135,408 - ABIE40_RS00655 0.25 -0.3
135,481 - ABIE40_RS00655 0.32 +0.5
135,481 - ABIE40_RS00655 0.32 +1.0
135,489 + ABIE40_RS00655 0.33 -0.0
135,489 + ABIE40_RS00655 0.33 -0.7
135,549 + ABIE40_RS00655 0.39 -0.9
135,549 + ABIE40_RS00655 0.39 +0.2
135,549 + ABIE40_RS00655 0.39 -1.5
135,549 + ABIE40_RS00655 0.39 -0.7
135,552 + ABIE40_RS00655 0.39 -0.2
135,553 - ABIE40_RS00655 0.39 -1.4
135,553 - ABIE40_RS00655 0.39 -1.3
135,638 + ABIE40_RS00655 0.47 +1.3
135,638 + ABIE40_RS00655 0.47 +1.1
135,741 + ABIE40_RS00655 0.57 +1.5
135,741 + ABIE40_RS00655 0.57 -0.8
135,742 - ABIE40_RS00655 0.57 -0.8
135,742 - ABIE40_RS00655 0.57 +0.3
135,742 - ABIE40_RS00655 0.57 +2.1
135,742 - ABIE40_RS00655 0.57 -0.6

Or see this region's nucleotide sequence