Experiment: R2A with 3-octanone 10.6206 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS27125 and ABIE40_RS27130 are separated by 315 nucleotides ABIE40_RS27130 and ABIE40_RS27135 are separated by 95 nucleotides
ABIE40_RS27125: ABIE40_RS27125 - ATP-binding protein, at 143,688 to 144,851
_RS27125
ABIE40_RS27130: ABIE40_RS27130 - NUDIX hydrolase, at 145,167 to 145,628
_RS27130
ABIE40_RS27135: ABIE40_RS27135 - CHAD domain-containing protein, at 145,724 to 147,178
_RS27135
Position (kb) 145
146 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 144.325 kb on + strand, within ABIE40_RS27125 at 144.416 kb on + strand, within ABIE40_RS27125 at 144.417 kb on - strand, within ABIE40_RS27125 at 144.476 kb on + strand, within ABIE40_RS27125 at 144.664 kb on + strand, within ABIE40_RS27125 at 144.664 kb on + strand, within ABIE40_RS27125 at 144.664 kb on + strand, within ABIE40_RS27125 at 144.665 kb on - strand, within ABIE40_RS27125 at 144.665 kb on - strand, within ABIE40_RS27125 at 144.718 kb on + strand, within ABIE40_RS27125 at 144.719 kb on - strand, within ABIE40_RS27125 at 144.720 kb on + strand, within ABIE40_RS27125 at 144.720 kb on + strand, within ABIE40_RS27125 at 144.720 kb on + strand, within ABIE40_RS27125 at 144.720 kb on + strand, within ABIE40_RS27125 at 144.720 kb on + strand, within ABIE40_RS27125 at 144.720 kb on + strand, within ABIE40_RS27125 at 144.720 kb on + strand, within ABIE40_RS27125 at 144.721 kb on - strand, within ABIE40_RS27125 at 144.721 kb on - strand, within ABIE40_RS27125 at 144.721 kb on - strand, within ABIE40_RS27125 at 144.721 kb on - strand, within ABIE40_RS27125 at 144.722 kb on + strand, within ABIE40_RS27125 at 144.723 kb on - strand, within ABIE40_RS27125 at 144.723 kb on - strand, within ABIE40_RS27125 at 144.723 kb on - strand, within ABIE40_RS27125 at 144.840 kb on - strand at 144.840 kb on - strand at 144.964 kb on + strand at 144.964 kb on + strand at 144.965 kb on - strand at 145.134 kb on - strand at 145.157 kb on + strand at 145.157 kb on + strand at 145.165 kb on + strand at 145.165 kb on + strand at 145.165 kb on + strand at 145.165 kb on + strand at 145.166 kb on - strand at 145.166 kb on - strand at 145.166 kb on - strand at 145.345 kb on + strand, within ABIE40_RS27130 at 145.473 kb on + strand, within ABIE40_RS27130 at 145.473 kb on + strand, within ABIE40_RS27130 at 145.475 kb on + strand, within ABIE40_RS27130 at 145.475 kb on + strand, within ABIE40_RS27130 at 145.475 kb on + strand, within ABIE40_RS27130 at 145.475 kb on + strand, within ABIE40_RS27130 at 145.475 kb on + strand, within ABIE40_RS27130 at 145.476 kb on - strand, within ABIE40_RS27130 at 145.704 kb on - strand at 145.720 kb on + strand at 145.720 kb on + strand at 145.720 kb on + strand at 145.720 kb on + strand at 145.721 kb on - strand at 145.721 kb on - strand at 145.721 kb on - strand at 145.721 kb on - strand at 145.721 kb on - strand at 145.835 kb on + strand at 145.874 kb on + strand, within ABIE40_RS27135 at 145.874 kb on + strand, within ABIE40_RS27135 at 145.874 kb on + strand, within ABIE40_RS27135 at 145.875 kb on - strand, within ABIE40_RS27135 at 145.876 kb on + strand, within ABIE40_RS27135 at 145.971 kb on + strand, within ABIE40_RS27135 at 145.971 kb on + strand, within ABIE40_RS27135 at 145.971 kb on + strand, within ABIE40_RS27135 at 145.972 kb on - strand, within ABIE40_RS27135 at 145.972 kb on - strand, within ABIE40_RS27135 at 146.005 kb on + strand, within ABIE40_RS27135 at 146.005 kb on + strand, within ABIE40_RS27135 at 146.005 kb on + strand, within ABIE40_RS27135 at 146.006 kb on - strand, within ABIE40_RS27135 at 146.006 kb on - strand, within ABIE40_RS27135 at 146.006 kb on - strand, within ABIE40_RS27135 at 146.006 kb on - strand, within ABIE40_RS27135 at 146.006 kb on - strand, within ABIE40_RS27135 at 146.006 kb on - strand, within ABIE40_RS27135 at 146.040 kb on + strand, within ABIE40_RS27135 at 146.040 kb on + strand, within ABIE40_RS27135 at 146.040 kb on + strand, within ABIE40_RS27135 at 146.040 kb on + strand, within ABIE40_RS27135 at 146.041 kb on - strand, within ABIE40_RS27135 at 146.333 kb on + strand, within ABIE40_RS27135 at 146.333 kb on + strand, within ABIE40_RS27135 at 146.423 kb on - strand, within ABIE40_RS27135 at 146.536 kb on - strand, within ABIE40_RS27135
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 10.6206 mM remove 144,325 + ABIE40_RS27125 0.55 +0.8 144,416 + ABIE40_RS27125 0.63 -1.7 144,417 - ABIE40_RS27125 0.63 -0.9 144,476 + ABIE40_RS27125 0.68 -1.7 144,664 + ABIE40_RS27125 0.84 -2.9 144,664 + ABIE40_RS27125 0.84 +1.1 144,664 + ABIE40_RS27125 0.84 -0.8 144,665 - ABIE40_RS27125 0.84 -0.6 144,665 - ABIE40_RS27125 0.84 +0.2 144,718 + ABIE40_RS27125 0.88 +1.5 144,719 - ABIE40_RS27125 0.89 +2.4 144,720 + ABIE40_RS27125 0.89 -1.8 144,720 + ABIE40_RS27125 0.89 +1.4 144,720 + ABIE40_RS27125 0.89 +2.4 144,720 + ABIE40_RS27125 0.89 -0.2 144,720 + ABIE40_RS27125 0.89 -1.5 144,720 + ABIE40_RS27125 0.89 +1.2 144,720 + ABIE40_RS27125 0.89 +3.9 144,721 - ABIE40_RS27125 0.89 +1.9 144,721 - ABIE40_RS27125 0.89 -4.1 144,721 - ABIE40_RS27125 0.89 +0.2 144,721 - ABIE40_RS27125 0.89 -3.6 144,722 + ABIE40_RS27125 0.89 +2.4 144,723 - ABIE40_RS27125 0.89 +0.8 144,723 - ABIE40_RS27125 0.89 +2.0 144,723 - ABIE40_RS27125 0.89 -0.7 144,840 - +0.8 144,840 - +0.8 144,964 + +0.0 144,964 + +0.2 144,965 - -0.9 145,134 - -0.0 145,157 + -0.0 145,157 + -1.4 145,165 + -0.2 145,165 + +5.7 145,165 + +0.4 145,165 + -2.9 145,166 - +1.3 145,166 - -1.2 145,166 - +0.7 145,345 + ABIE40_RS27130 0.39 +2.4 145,473 + ABIE40_RS27130 0.66 -1.1 145,473 + ABIE40_RS27130 0.66 +3.2 145,475 + ABIE40_RS27130 0.67 +0.7 145,475 + ABIE40_RS27130 0.67 -0.6 145,475 + ABIE40_RS27130 0.67 -2.0 145,475 + ABIE40_RS27130 0.67 -1.7 145,475 + ABIE40_RS27130 0.67 +2.1 145,476 - ABIE40_RS27130 0.67 +0.0 145,704 - +0.9 145,720 + +0.8 145,720 + +2.4 145,720 + -2.9 145,720 + +2.4 145,721 - +2.5 145,721 - +0.8 145,721 - +0.2 145,721 - -1.7 145,721 - -0.2 145,835 + +1.0 145,874 + ABIE40_RS27135 0.10 +1.9 145,874 + ABIE40_RS27135 0.10 +0.8 145,874 + ABIE40_RS27135 0.10 +1.0 145,875 - ABIE40_RS27135 0.10 -0.4 145,876 + ABIE40_RS27135 0.10 -1.5 145,971 + ABIE40_RS27135 0.17 +1.1 145,971 + ABIE40_RS27135 0.17 +0.5 145,971 + ABIE40_RS27135 0.17 +0.4 145,972 - ABIE40_RS27135 0.17 -2.6 145,972 - ABIE40_RS27135 0.17 -0.8 146,005 + ABIE40_RS27135 0.19 +0.4 146,005 + ABIE40_RS27135 0.19 -2.0 146,005 + ABIE40_RS27135 0.19 +2.6 146,006 - ABIE40_RS27135 0.19 -1.1 146,006 - ABIE40_RS27135 0.19 -2.8 146,006 - ABIE40_RS27135 0.19 -1.1 146,006 - ABIE40_RS27135 0.19 +0.0 146,006 - ABIE40_RS27135 0.19 +0.0 146,006 - ABIE40_RS27135 0.19 -0.2 146,040 + ABIE40_RS27135 0.22 +0.3 146,040 + ABIE40_RS27135 0.22 +2.4 146,040 + ABIE40_RS27135 0.22 -2.0 146,040 + ABIE40_RS27135 0.22 -0.4 146,041 - ABIE40_RS27135 0.22 +1.8 146,333 + ABIE40_RS27135 0.42 -0.8 146,333 + ABIE40_RS27135 0.42 -0.1 146,423 - ABIE40_RS27135 0.48 +1.2 146,536 - ABIE40_RS27135 0.56 -1.3
Or see this region's nucleotide sequence