Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS22545

Experiment: R2A with 3-octanone 10.6206 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS22540 and ABIE40_RS22545 are separated by 213 nucleotidesABIE40_RS22545 and ABIE40_RS22550 are separated by 124 nucleotides ABIE40_RS22540: ABIE40_RS22540 - AraC family transcriptional regulator, at 644,175 to 645,050 _RS22540 ABIE40_RS22545: ABIE40_RS22545 - alpha-glucosidase/alpha-galactosidase, at 645,264 to 646,730 _RS22545 ABIE40_RS22550: ABIE40_RS22550 - ABC transporter substrate-binding protein, at 646,855 to 648,942 _RS22550 Position (kb) 645 646 647Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 644.266 kb on + strand, within ABIE40_RS22540at 644.266 kb on + strand, within ABIE40_RS22540at 644.266 kb on + strand, within ABIE40_RS22540at 644.267 kb on - strand, within ABIE40_RS22540at 644.372 kb on - strand, within ABIE40_RS22540at 644.442 kb on - strand, within ABIE40_RS22540at 644.442 kb on - strand, within ABIE40_RS22540at 644.557 kb on + strand, within ABIE40_RS22540at 644.558 kb on - strand, within ABIE40_RS22540at 644.558 kb on - strand, within ABIE40_RS22540at 644.558 kb on - strand, within ABIE40_RS22540at 644.558 kb on - strand, within ABIE40_RS22540at 644.579 kb on - strand, within ABIE40_RS22540at 644.779 kb on + strand, within ABIE40_RS22540at 644.833 kb on + strand, within ABIE40_RS22540at 644.833 kb on + strand, within ABIE40_RS22540at 644.833 kb on + strand, within ABIE40_RS22540at 644.848 kb on + strand, within ABIE40_RS22540at 644.929 kb on + strand, within ABIE40_RS22540at 644.929 kb on + strand, within ABIE40_RS22540at 644.929 kb on + strand, within ABIE40_RS22540at 644.930 kb on - strand, within ABIE40_RS22540at 645.056 kb on + strandat 645.100 kb on - strandat 645.105 kb on + strandat 645.118 kb on + strandat 645.118 kb on + strandat 645.159 kb on + strandat 645.159 kb on + strandat 645.159 kb on + strandat 645.159 kb on + strandat 645.160 kb on - strandat 645.160 kb on - strandat 645.160 kb on - strandat 645.160 kb on - strandat 645.389 kb on + strandat 645.389 kb on + strandat 645.390 kb on - strandat 645.498 kb on + strand, within ABIE40_RS22545at 645.499 kb on - strand, within ABIE40_RS22545at 645.499 kb on - strand, within ABIE40_RS22545at 645.499 kb on - strand, within ABIE40_RS22545at 645.537 kb on + strand, within ABIE40_RS22545at 645.537 kb on + strand, within ABIE40_RS22545at 645.537 kb on + strand, within ABIE40_RS22545at 645.538 kb on - strand, within ABIE40_RS22545at 645.538 kb on - strand, within ABIE40_RS22545at 645.594 kb on - strand, within ABIE40_RS22545at 645.702 kb on + strand, within ABIE40_RS22545at 645.703 kb on - strand, within ABIE40_RS22545at 645.843 kb on + strand, within ABIE40_RS22545at 645.843 kb on + strand, within ABIE40_RS22545at 645.843 kb on + strand, within ABIE40_RS22545at 645.843 kb on + strand, within ABIE40_RS22545at 645.843 kb on + strand, within ABIE40_RS22545at 645.844 kb on - strand, within ABIE40_RS22545at 646.003 kb on - strand, within ABIE40_RS22545at 646.035 kb on + strand, within ABIE40_RS22545at 646.035 kb on + strand, within ABIE40_RS22545at 646.100 kb on - strand, within ABIE40_RS22545at 646.100 kb on - strand, within ABIE40_RS22545at 646.119 kb on + strand, within ABIE40_RS22545at 646.235 kb on + strand, within ABIE40_RS22545at 646.235 kb on + strand, within ABIE40_RS22545at 646.235 kb on + strand, within ABIE40_RS22545at 646.236 kb on - strand, within ABIE40_RS22545at 646.236 kb on - strand, within ABIE40_RS22545at 646.587 kb on + strandat 646.588 kb on - strandat 646.601 kb on - strandat 646.990 kb on + strandat 646.990 kb on + strandat 646.990 kb on + strandat 646.991 kb on - strandat 646.991 kb on - strandat 646.991 kb on - strandat 646.991 kb on - strandat 646.991 kb on - strandat 646.991 kb on - strandat 646.991 kb on - strandat 646.991 kb on - strandat 646.991 kb on - strandat 647.035 kb on + strandat 647.035 kb on + strandat 647.036 kb on - strandat 647.037 kb on + strandat 647.038 kb on - strandat 647.161 kb on + strand, within ABIE40_RS22550at 647.161 kb on + strand, within ABIE40_RS22550at 647.162 kb on - strand, within ABIE40_RS22550at 647.185 kb on - strand, within ABIE40_RS22550at 647.212 kb on + strand, within ABIE40_RS22550at 647.212 kb on + strand, within ABIE40_RS22550at 647.212 kb on + strand, within ABIE40_RS22550at 647.330 kb on + strand, within ABIE40_RS22550at 647.331 kb on - strand, within ABIE40_RS22550at 647.331 kb on - strand, within ABIE40_RS22550at 647.440 kb on + strand, within ABIE40_RS22550at 647.542 kb on + strand, within ABIE40_RS22550at 647.542 kb on + strand, within ABIE40_RS22550at 647.543 kb on - strand, within ABIE40_RS22550at 647.543 kb on - strand, within ABIE40_RS22550at 647.543 kb on - strand, within ABIE40_RS22550at 647.543 kb on - strand, within ABIE40_RS22550at 647.543 kb on - strand, within ABIE40_RS22550at 647.584 kb on + strand, within ABIE40_RS22550at 647.584 kb on + strand, within ABIE40_RS22550at 647.584 kb on + strand, within ABIE40_RS22550at 647.584 kb on + strand, within ABIE40_RS22550at 647.585 kb on - strand, within ABIE40_RS22550at 647.585 kb on - strand, within ABIE40_RS22550at 647.585 kb on - strand, within ABIE40_RS22550at 647.585 kb on - strand, within ABIE40_RS22550at 647.585 kb on - strand, within ABIE40_RS22550at 647.585 kb on - strand, within ABIE40_RS22550at 647.585 kb on - strand, within ABIE40_RS22550at 647.591 kb on - strand, within ABIE40_RS22550at 647.592 kb on + strand, within ABIE40_RS22550at 647.593 kb on - strand, within ABIE40_RS22550at 647.593 kb on - strand, within ABIE40_RS22550at 647.593 kb on - strand, within ABIE40_RS22550at 647.593 kb on - strand, within ABIE40_RS22550at 647.603 kb on - strand, within ABIE40_RS22550at 647.631 kb on + strand, within ABIE40_RS22550at 647.632 kb on - strand, within ABIE40_RS22550at 647.656 kb on + strand, within ABIE40_RS22550at 647.657 kb on - strand, within ABIE40_RS22550at 647.671 kb on + strand, within ABIE40_RS22550at 647.671 kb on + strand, within ABIE40_RS22550at 647.671 kb on + strand, within ABIE40_RS22550at 647.672 kb on - strand, within ABIE40_RS22550

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 10.6206 mM
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644,266 + ABIE40_RS22540 0.10 +0.6
644,266 + ABIE40_RS22540 0.10 +1.2
644,266 + ABIE40_RS22540 0.10 +3.7
644,267 - ABIE40_RS22540 0.11 +1.2
644,372 - ABIE40_RS22540 0.22 +1.9
644,442 - ABIE40_RS22540 0.30 -0.6
644,442 - ABIE40_RS22540 0.30 -1.7
644,557 + ABIE40_RS22540 0.44 -2.5
644,558 - ABIE40_RS22540 0.44 -2.0
644,558 - ABIE40_RS22540 0.44 +0.8
644,558 - ABIE40_RS22540 0.44 -1.6
644,558 - ABIE40_RS22540 0.44 +2.8
644,579 - ABIE40_RS22540 0.46 +0.7
644,779 + ABIE40_RS22540 0.69 +1.9
644,833 + ABIE40_RS22540 0.75 +1.1
644,833 + ABIE40_RS22540 0.75 -3.9
644,833 + ABIE40_RS22540 0.75 -1.9
644,848 + ABIE40_RS22540 0.77 +0.8
644,929 + ABIE40_RS22540 0.86 +0.2
644,929 + ABIE40_RS22540 0.86 -1.2
644,929 + ABIE40_RS22540 0.86 +1.1
644,930 - ABIE40_RS22540 0.86 -2.2
645,056 + -3.6
645,100 - +0.1
645,105 + -2.0
645,118 + -0.4
645,118 + -1.0
645,159 + +1.1
645,159 + +1.0
645,159 + +1.7
645,159 + -0.7
645,160 - +2.1
645,160 - +0.0
645,160 - +1.0
645,160 - -0.2
645,389 + -0.7
645,389 + -1.2
645,390 - +0.6
645,498 + ABIE40_RS22545 0.16 -0.5
645,499 - ABIE40_RS22545 0.16 -0.3
645,499 - ABIE40_RS22545 0.16 +2.3
645,499 - ABIE40_RS22545 0.16 -2.0
645,537 + ABIE40_RS22545 0.19 -2.3
645,537 + ABIE40_RS22545 0.19 -1.0
645,537 + ABIE40_RS22545 0.19 +1.3
645,538 - ABIE40_RS22545 0.19 -0.2
645,538 - ABIE40_RS22545 0.19 -1.2
645,594 - ABIE40_RS22545 0.22 -2.6
645,702 + ABIE40_RS22545 0.30 +0.1
645,703 - ABIE40_RS22545 0.30 +0.6
645,843 + ABIE40_RS22545 0.39 -2.4
645,843 + ABIE40_RS22545 0.39 +0.1
645,843 + ABIE40_RS22545 0.39 -3.2
645,843 + ABIE40_RS22545 0.39 -1.0
645,843 + ABIE40_RS22545 0.39 +0.7
645,844 - ABIE40_RS22545 0.40 +0.8
646,003 - ABIE40_RS22545 0.50 -1.5
646,035 + ABIE40_RS22545 0.53 -1.9
646,035 + ABIE40_RS22545 0.53 -2.4
646,100 - ABIE40_RS22545 0.57 -0.2
646,100 - ABIE40_RS22545 0.57 -0.1
646,119 + ABIE40_RS22545 0.58 -1.4
646,235 + ABIE40_RS22545 0.66 -0.1
646,235 + ABIE40_RS22545 0.66 -2.6
646,235 + ABIE40_RS22545 0.66 +0.6
646,236 - ABIE40_RS22545 0.66 -1.4
646,236 - ABIE40_RS22545 0.66 -3.1
646,587 + +0.1
646,588 - +0.6
646,601 - +2.1
646,990 + +2.4
646,990 + +2.1
646,990 + +0.1
646,991 - -0.3
646,991 - +2.1
646,991 - +2.1
646,991 - -1.9
646,991 - -0.5
646,991 - -0.2
646,991 - -1.6
646,991 - +0.5
646,991 - +0.9
647,035 + +0.4
647,035 + -1.6
647,036 - +2.1
647,037 + -0.8
647,038 - +2.7
647,161 + ABIE40_RS22550 0.15 +0.4
647,161 + ABIE40_RS22550 0.15 -2.0
647,162 - ABIE40_RS22550 0.15 -2.5
647,185 - ABIE40_RS22550 0.16 -3.9
647,212 + ABIE40_RS22550 0.17 -0.7
647,212 + ABIE40_RS22550 0.17 +0.2
647,212 + ABIE40_RS22550 0.17 -1.3
647,330 + ABIE40_RS22550 0.23 -1.3
647,331 - ABIE40_RS22550 0.23 +0.5
647,331 - ABIE40_RS22550 0.23 -0.7
647,440 + ABIE40_RS22550 0.28 -0.2
647,542 + ABIE40_RS22550 0.33 +0.4
647,542 + ABIE40_RS22550 0.33 +0.6
647,543 - ABIE40_RS22550 0.33 -0.1
647,543 - ABIE40_RS22550 0.33 +1.6
647,543 - ABIE40_RS22550 0.33 -0.2
647,543 - ABIE40_RS22550 0.33 -0.4
647,543 - ABIE40_RS22550 0.33 -3.2
647,584 + ABIE40_RS22550 0.35 +1.2
647,584 + ABIE40_RS22550 0.35 -2.9
647,584 + ABIE40_RS22550 0.35 +0.6
647,584 + ABIE40_RS22550 0.35 +0.7
647,585 - ABIE40_RS22550 0.35 -1.3
647,585 - ABIE40_RS22550 0.35 -2.1
647,585 - ABIE40_RS22550 0.35 +0.6
647,585 - ABIE40_RS22550 0.35 -0.7
647,585 - ABIE40_RS22550 0.35 -0.7
647,585 - ABIE40_RS22550 0.35 +1.0
647,585 - ABIE40_RS22550 0.35 +0.1
647,591 - ABIE40_RS22550 0.35 -2.3
647,592 + ABIE40_RS22550 0.35 +0.4
647,593 - ABIE40_RS22550 0.35 -0.7
647,593 - ABIE40_RS22550 0.35 +2.9
647,593 - ABIE40_RS22550 0.35 -1.4
647,593 - ABIE40_RS22550 0.35 -4.1
647,603 - ABIE40_RS22550 0.36 -0.5
647,631 + ABIE40_RS22550 0.37 +3.1
647,632 - ABIE40_RS22550 0.37 +0.8
647,656 + ABIE40_RS22550 0.38 -1.2
647,657 - ABIE40_RS22550 0.38 -2.5
647,671 + ABIE40_RS22550 0.39 -0.1
647,671 + ABIE40_RS22550 0.39 -0.3
647,671 + ABIE40_RS22550 0.39 +0.1
647,672 - ABIE40_RS22550 0.39 +0.1

Or see this region's nucleotide sequence