Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS20600

Experiment: R2A with 3-octanone 10.6206 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS20590 and ABIE40_RS20595 overlap by 4 nucleotidesABIE40_RS20595 and ABIE40_RS20600 are separated by 25 nucleotidesABIE40_RS20600 and ABIE40_RS20605 are separated by 68 nucleotides ABIE40_RS20590: ABIE40_RS20590 - ABC transporter permease, at 224,851 to 225,699 _RS20590 ABIE40_RS20595: ABIE40_RS20595 - ABC transporter permease, at 225,696 to 226,616 _RS20595 ABIE40_RS20600: ABIE40_RS20600 - ABC transporter substrate-binding protein, at 226,642 to 228,261 _RS20600 ABIE40_RS20605: ABIE40_RS20605 - acetamidase/formamidase family protein, at 228,330 to 229,274 _RS20605 Position (kb) 226 227 228 229Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 225.777 kb on + strandat 225.777 kb on + strandat 225.845 kb on + strand, within ABIE40_RS20595at 225.845 kb on + strand, within ABIE40_RS20595at 225.846 kb on - strand, within ABIE40_RS20595at 225.898 kb on - strand, within ABIE40_RS20595at 225.936 kb on + strand, within ABIE40_RS20595at 225.937 kb on - strand, within ABIE40_RS20595at 225.937 kb on - strand, within ABIE40_RS20595at 226.152 kb on + strand, within ABIE40_RS20595at 226.153 kb on - strand, within ABIE40_RS20595at 226.153 kb on - strand, within ABIE40_RS20595at 226.153 kb on - strand, within ABIE40_RS20595at 226.219 kb on + strand, within ABIE40_RS20595at 226.258 kb on - strand, within ABIE40_RS20595at 226.305 kb on + strand, within ABIE40_RS20595at 226.305 kb on + strand, within ABIE40_RS20595at 226.305 kb on + strand, within ABIE40_RS20595at 226.305 kb on + strand, within ABIE40_RS20595at 226.305 kb on + strand, within ABIE40_RS20595at 226.305 kb on + strand, within ABIE40_RS20595at 226.305 kb on + strand, within ABIE40_RS20595at 226.305 kb on + strand, within ABIE40_RS20595at 226.306 kb on - strand, within ABIE40_RS20595at 226.306 kb on - strand, within ABIE40_RS20595at 226.453 kb on - strand, within ABIE40_RS20595at 226.607 kb on + strandat 226.607 kb on + strandat 226.608 kb on - strandat 226.641 kb on + strandat 226.641 kb on + strandat 226.641 kb on + strandat 226.641 kb on + strandat 226.641 kb on + strandat 226.641 kb on + strandat 226.642 kb on - strandat 226.642 kb on - strandat 226.642 kb on - strandat 226.642 kb on - strandat 226.743 kb on + strandat 226.743 kb on + strandat 226.744 kb on - strandat 226.753 kb on + strandat 226.753 kb on + strandat 226.754 kb on - strandat 226.754 kb on - strandat 226.754 kb on - strandat 226.764 kb on + strandat 226.828 kb on + strand, within ABIE40_RS20600at 226.829 kb on - strand, within ABIE40_RS20600at 226.846 kb on + strand, within ABIE40_RS20600at 226.847 kb on - strand, within ABIE40_RS20600at 226.847 kb on - strand, within ABIE40_RS20600at 226.847 kb on - strand, within ABIE40_RS20600at 226.918 kb on + strand, within ABIE40_RS20600at 226.918 kb on + strand, within ABIE40_RS20600at 226.919 kb on - strand, within ABIE40_RS20600at 226.919 kb on - strand, within ABIE40_RS20600at 226.919 kb on - strand, within ABIE40_RS20600at 227.268 kb on + strand, within ABIE40_RS20600at 227.317 kb on + strand, within ABIE40_RS20600at 227.317 kb on + strand, within ABIE40_RS20600at 227.317 kb on + strand, within ABIE40_RS20600at 227.317 kb on + strand, within ABIE40_RS20600at 227.317 kb on + strand, within ABIE40_RS20600at 227.318 kb on - strand, within ABIE40_RS20600at 227.318 kb on - strand, within ABIE40_RS20600at 227.508 kb on + strand, within ABIE40_RS20600at 227.515 kb on + strand, within ABIE40_RS20600at 227.516 kb on - strand, within ABIE40_RS20600at 227.665 kb on + strand, within ABIE40_RS20600at 227.665 kb on + strand, within ABIE40_RS20600at 227.665 kb on + strand, within ABIE40_RS20600at 227.666 kb on - strand, within ABIE40_RS20600at 227.688 kb on + strand, within ABIE40_RS20600at 227.688 kb on + strand, within ABIE40_RS20600at 227.688 kb on + strand, within ABIE40_RS20600at 227.689 kb on - strand, within ABIE40_RS20600at 227.689 kb on - strand, within ABIE40_RS20600at 227.692 kb on + strand, within ABIE40_RS20600at 227.692 kb on + strand, within ABIE40_RS20600at 227.692 kb on + strand, within ABIE40_RS20600at 227.693 kb on - strand, within ABIE40_RS20600at 227.693 kb on - strand, within ABIE40_RS20600at 227.693 kb on - strand, within ABIE40_RS20600at 227.693 kb on - strand, within ABIE40_RS20600at 227.693 kb on - strand, within ABIE40_RS20600at 227.693 kb on - strand, within ABIE40_RS20600at 227.791 kb on - strand, within ABIE40_RS20600at 227.959 kb on + strand, within ABIE40_RS20600at 227.960 kb on - strand, within ABIE40_RS20600at 228.208 kb on + strandat 228.208 kb on + strandat 228.208 kb on + strandat 228.208 kb on + strandat 228.208 kb on + strandat 228.208 kb on + strandat 228.209 kb on - strandat 228.210 kb on + strandat 228.211 kb on - strandat 228.211 kb on - strandat 228.247 kb on + strandat 228.247 kb on + strandat 228.248 kb on - strandat 228.248 kb on - strandat 228.248 kb on - strandat 228.248 kb on - strandat 228.248 kb on - strandat 228.248 kb on - strandat 228.248 kb on - strandat 228.248 kb on - strandat 228.259 kb on + strandat 228.259 kb on + strandat 228.260 kb on - strandat 228.488 kb on + strand, within ABIE40_RS20605at 228.489 kb on - strand, within ABIE40_RS20605at 228.489 kb on - strand, within ABIE40_RS20605at 228.541 kb on - strand, within ABIE40_RS20605at 228.684 kb on + strand, within ABIE40_RS20605at 228.684 kb on + strand, within ABIE40_RS20605at 228.684 kb on + strand, within ABIE40_RS20605at 228.684 kb on + strand, within ABIE40_RS20605at 228.685 kb on - strand, within ABIE40_RS20605at 228.685 kb on - strand, within ABIE40_RS20605at 228.862 kb on - strand, within ABIE40_RS20605at 228.862 kb on - strand, within ABIE40_RS20605at 228.862 kb on - strand, within ABIE40_RS20605at 228.906 kb on - strand, within ABIE40_RS20605at 228.949 kb on + strand, within ABIE40_RS20605at 228.949 kb on + strand, within ABIE40_RS20605at 228.949 kb on + strand, within ABIE40_RS20605at 228.950 kb on - strand, within ABIE40_RS20605at 229.062 kb on + strand, within ABIE40_RS20605at 229.173 kb on + strand, within ABIE40_RS20605at 229.173 kb on + strand, within ABIE40_RS20605at 229.173 kb on + strand, within ABIE40_RS20605at 229.173 kb on + strand, within ABIE40_RS20605at 229.173 kb on + strand, within ABIE40_RS20605at 229.173 kb on + strand, within ABIE40_RS20605at 229.174 kb on - strand, within ABIE40_RS20605at 229.174 kb on - strand, within ABIE40_RS20605at 229.174 kb on - strand, within ABIE40_RS20605at 229.174 kb on - strand, within ABIE40_RS20605at 229.174 kb on - strand, within ABIE40_RS20605at 229.174 kb on - strand, within ABIE40_RS20605at 229.174 kb on - strand, within ABIE40_RS20605at 229.174 kb on - strand, within ABIE40_RS20605at 229.174 kb on - strand, within ABIE40_RS20605at 229.175 kb on + strand, within ABIE40_RS20605at 229.175 kb on + strand, within ABIE40_RS20605at 229.175 kb on + strand, within ABIE40_RS20605at 229.176 kb on - strand, within ABIE40_RS20605at 229.176 kb on - strand, within ABIE40_RS20605at 229.248 kb on + strandat 229.248 kb on + strandat 229.249 kb on - strandat 229.249 kb on - strandat 229.249 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 10.6206 mM
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225,777 + +0.0
225,777 + -1.5
225,845 + ABIE40_RS20595 0.16 -0.2
225,845 + ABIE40_RS20595 0.16 -0.2
225,846 - ABIE40_RS20595 0.16 -3.0
225,898 - ABIE40_RS20595 0.22 +1.2
225,936 + ABIE40_RS20595 0.26 -3.7
225,937 - ABIE40_RS20595 0.26 -1.6
225,937 - ABIE40_RS20595 0.26 +0.3
226,152 + ABIE40_RS20595 0.50 -1.7
226,153 - ABIE40_RS20595 0.50 -1.0
226,153 - ABIE40_RS20595 0.50 -1.5
226,153 - ABIE40_RS20595 0.50 +3.2
226,219 + ABIE40_RS20595 0.57 +0.6
226,258 - ABIE40_RS20595 0.61 -0.2
226,305 + ABIE40_RS20595 0.66 +0.9
226,305 + ABIE40_RS20595 0.66 -2.8
226,305 + ABIE40_RS20595 0.66 +0.0
226,305 + ABIE40_RS20595 0.66 +0.8
226,305 + ABIE40_RS20595 0.66 +5.2
226,305 + ABIE40_RS20595 0.66 +0.0
226,305 + ABIE40_RS20595 0.66 -0.4
226,305 + ABIE40_RS20595 0.66 +0.9
226,306 - ABIE40_RS20595 0.66 +1.9
226,306 - ABIE40_RS20595 0.66 +0.8
226,453 - ABIE40_RS20595 0.82 +0.2
226,607 + -1.3
226,607 + -0.5
226,608 - +1.4
226,641 + -1.3
226,641 + +0.5
226,641 + -0.4
226,641 + +0.7
226,641 + -1.4
226,641 + -0.3
226,642 - +0.3
226,642 - -0.3
226,642 - +0.7
226,642 - +1.4
226,743 + +2.5
226,743 + +0.2
226,744 - -0.8
226,753 + -1.1
226,753 + +1.3
226,754 - -0.8
226,754 - -0.5
226,754 - +0.1
226,764 + +0.8
226,828 + ABIE40_RS20600 0.11 -0.0
226,829 - ABIE40_RS20600 0.12 -0.2
226,846 + ABIE40_RS20600 0.13 -2.3
226,847 - ABIE40_RS20600 0.13 -1.8
226,847 - ABIE40_RS20600 0.13 -1.1
226,847 - ABIE40_RS20600 0.13 +0.9
226,918 + ABIE40_RS20600 0.17 +2.0
226,918 + ABIE40_RS20600 0.17 -0.5
226,919 - ABIE40_RS20600 0.17 +0.7
226,919 - ABIE40_RS20600 0.17 +0.9
226,919 - ABIE40_RS20600 0.17 +0.9
227,268 + ABIE40_RS20600 0.39 +0.1
227,317 + ABIE40_RS20600 0.42 -2.2
227,317 + ABIE40_RS20600 0.42 +0.7
227,317 + ABIE40_RS20600 0.42 -2.1
227,317 + ABIE40_RS20600 0.42 -1.9
227,317 + ABIE40_RS20600 0.42 +0.2
227,318 - ABIE40_RS20600 0.42 +0.9
227,318 - ABIE40_RS20600 0.42 +0.3
227,508 + ABIE40_RS20600 0.53 +0.1
227,515 + ABIE40_RS20600 0.54 -0.5
227,516 - ABIE40_RS20600 0.54 -1.7
227,665 + ABIE40_RS20600 0.63 -0.4
227,665 + ABIE40_RS20600 0.63 +3.7
227,665 + ABIE40_RS20600 0.63 -0.8
227,666 - ABIE40_RS20600 0.63 -0.3
227,688 + ABIE40_RS20600 0.65 -1.1
227,688 + ABIE40_RS20600 0.65 -0.8
227,688 + ABIE40_RS20600 0.65 +1.2
227,689 - ABIE40_RS20600 0.65 -1.8
227,689 - ABIE40_RS20600 0.65 +1.6
227,692 + ABIE40_RS20600 0.65 +2.1
227,692 + ABIE40_RS20600 0.65 -2.1
227,692 + ABIE40_RS20600 0.65 -0.3
227,693 - ABIE40_RS20600 0.65 -1.8
227,693 - ABIE40_RS20600 0.65 -0.1
227,693 - ABIE40_RS20600 0.65 -1.2
227,693 - ABIE40_RS20600 0.65 -1.2
227,693 - ABIE40_RS20600 0.65 -0.6
227,693 - ABIE40_RS20600 0.65 -2.3
227,791 - ABIE40_RS20600 0.71 +4.2
227,959 + ABIE40_RS20600 0.81 -2.6
227,960 - ABIE40_RS20600 0.81 +0.3
228,208 + +0.5
228,208 + +0.8
228,208 + +0.3
228,208 + -1.8
228,208 + +0.7
228,208 + -0.6
228,209 - +0.6
228,210 + -0.5
228,211 - +0.4
228,211 - +0.6
228,247 + -1.5
228,247 + +0.4
228,248 - +4.2
228,248 - +0.1
228,248 - -1.9
228,248 - +0.2
228,248 - -1.3
228,248 - -0.7
228,248 - +0.5
228,248 - +0.2
228,259 + +1.4
228,259 + +0.0
228,260 - -1.2
228,488 + ABIE40_RS20605 0.17 +0.2
228,489 - ABIE40_RS20605 0.17 -0.6
228,489 - ABIE40_RS20605 0.17 +0.5
228,541 - ABIE40_RS20605 0.22 +2.4
228,684 + ABIE40_RS20605 0.37 -0.2
228,684 + ABIE40_RS20605 0.37 -3.6
228,684 + ABIE40_RS20605 0.37 -0.8
228,684 + ABIE40_RS20605 0.37 +0.2
228,685 - ABIE40_RS20605 0.38 +0.6
228,685 - ABIE40_RS20605 0.38 -0.4
228,862 - ABIE40_RS20605 0.56 -0.5
228,862 - ABIE40_RS20605 0.56 -0.6
228,862 - ABIE40_RS20605 0.56 -1.4
228,906 - ABIE40_RS20605 0.61 -1.5
228,949 + ABIE40_RS20605 0.66 -1.8
228,949 + ABIE40_RS20605 0.66 +1.5
228,949 + ABIE40_RS20605 0.66 +0.2
228,950 - ABIE40_RS20605 0.66 +0.1
229,062 + ABIE40_RS20605 0.77 -0.7
229,173 + ABIE40_RS20605 0.89 +0.3
229,173 + ABIE40_RS20605 0.89 -2.0
229,173 + ABIE40_RS20605 0.89 -3.6
229,173 + ABIE40_RS20605 0.89 +1.6
229,173 + ABIE40_RS20605 0.89 -0.2
229,173 + ABIE40_RS20605 0.89 -0.6
229,174 - ABIE40_RS20605 0.89 +2.5
229,174 - ABIE40_RS20605 0.89 +0.4
229,174 - ABIE40_RS20605 0.89 -0.0
229,174 - ABIE40_RS20605 0.89 +0.6
229,174 - ABIE40_RS20605 0.89 +0.2
229,174 - ABIE40_RS20605 0.89 +0.9
229,174 - ABIE40_RS20605 0.89 -2.4
229,174 - ABIE40_RS20605 0.89 -2.3
229,174 - ABIE40_RS20605 0.89 +1.0
229,175 + ABIE40_RS20605 0.89 -3.6
229,175 + ABIE40_RS20605 0.89 +2.2
229,175 + ABIE40_RS20605 0.89 +0.5
229,176 - ABIE40_RS20605 0.90 -1.5
229,176 - ABIE40_RS20605 0.90 +0.3
229,248 + +0.3
229,248 + -3.5
229,249 - -1.2
229,249 - -3.1
229,249 - +3.5

Or see this region's nucleotide sequence