Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS19795

Experiment: R2A with 3-octanone 10.6206 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS19790 and ABIE40_RS19795 are separated by 108 nucleotidesABIE40_RS19795 and ABIE40_RS19800 are separated by 6 nucleotidesABIE40_RS19800 and ABIE40_RS19805 overlap by 4 nucleotidesABIE40_RS19805 and ABIE40_RS19810 are separated by 116 nucleotides ABIE40_RS19790: ABIE40_RS19790 - ABC transporter transmembrane domain-containing protein, at 57,218 to 59,932 _RS19790 ABIE40_RS19795: ABIE40_RS19795 - cyclic nucleotide-binding domain-containing protein, at 60,041 to 60,508 _RS19795 ABIE40_RS19800: ABIE40_RS19800 - type II toxin-antitoxin system RelE/ParE family toxin, at 60,515 to 60,808 _RS19800 ABIE40_RS19805: ABIE40_RS19805 - hypothetical protein, at 60,805 to 61,269 _RS19805 ABIE40_RS19810: ABIE40_RS19810 - MFS transporter, at 61,386 to 62,714 _RS19810 Position (kb) 60 61Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 59.067 kb on - strand, within ABIE40_RS19790at 59.067 kb on - strand, within ABIE40_RS19790at 59.112 kb on - strand, within ABIE40_RS19790at 59.225 kb on + strand, within ABIE40_RS19790at 59.225 kb on + strand, within ABIE40_RS19790at 59.225 kb on + strand, within ABIE40_RS19790at 59.226 kb on - strand, within ABIE40_RS19790at 59.226 kb on - strand, within ABIE40_RS19790at 59.304 kb on + strand, within ABIE40_RS19790at 59.315 kb on + strand, within ABIE40_RS19790at 59.315 kb on + strand, within ABIE40_RS19790at 59.315 kb on + strand, within ABIE40_RS19790at 59.315 kb on + strand, within ABIE40_RS19790at 59.315 kb on + strand, within ABIE40_RS19790at 59.315 kb on + strand, within ABIE40_RS19790at 59.315 kb on + strand, within ABIE40_RS19790at 59.316 kb on - strand, within ABIE40_RS19790at 59.316 kb on - strand, within ABIE40_RS19790at 59.316 kb on - strand, within ABIE40_RS19790at 59.318 kb on - strand, within ABIE40_RS19790at 59.401 kb on + strand, within ABIE40_RS19790at 59.401 kb on + strand, within ABIE40_RS19790at 59.401 kb on + strand, within ABIE40_RS19790at 59.401 kb on + strand, within ABIE40_RS19790at 59.402 kb on - strand, within ABIE40_RS19790at 59.402 kb on - strand, within ABIE40_RS19790at 59.436 kb on - strand, within ABIE40_RS19790at 59.436 kb on - strand, within ABIE40_RS19790at 59.436 kb on - strand, within ABIE40_RS19790at 59.501 kb on + strand, within ABIE40_RS19790at 59.501 kb on + strand, within ABIE40_RS19790at 59.570 kb on + strand, within ABIE40_RS19790at 59.571 kb on - strand, within ABIE40_RS19790at 59.656 kb on + strand, within ABIE40_RS19790at 59.657 kb on - strand, within ABIE40_RS19790at 59.687 kb on + strandat 59.908 kb on + strandat 59.908 kb on + strandat 59.925 kb on + strandat 59.931 kb on - strandat 59.931 kb on - strandat 59.933 kb on + strandat 59.933 kb on + strandat 59.939 kb on - strandat 59.981 kb on + strandat 59.981 kb on + strandat 59.989 kb on + strandat 60.146 kb on + strand, within ABIE40_RS19795at 60.146 kb on + strand, within ABIE40_RS19795at 60.197 kb on + strand, within ABIE40_RS19795at 60.197 kb on + strand, within ABIE40_RS19795at 60.197 kb on + strand, within ABIE40_RS19795at 60.197 kb on + strand, within ABIE40_RS19795at 60.560 kb on + strand, within ABIE40_RS19800at 60.560 kb on + strand, within ABIE40_RS19800at 60.560 kb on + strand, within ABIE40_RS19800at 60.560 kb on + strand, within ABIE40_RS19800at 60.561 kb on - strand, within ABIE40_RS19800at 60.561 kb on - strand, within ABIE40_RS19800at 60.561 kb on - strand, within ABIE40_RS19800at 60.561 kb on - strand, within ABIE40_RS19800at 60.561 kb on - strand, within ABIE40_RS19800at 60.689 kb on - strand, within ABIE40_RS19800at 60.702 kb on + strand, within ABIE40_RS19800at 60.703 kb on - strand, within ABIE40_RS19800at 60.703 kb on - strand, within ABIE40_RS19800at 60.703 kb on - strand, within ABIE40_RS19800at 60.706 kb on + strand, within ABIE40_RS19800at 60.706 kb on + strand, within ABIE40_RS19800at 60.706 kb on + strand, within ABIE40_RS19800at 60.706 kb on + strand, within ABIE40_RS19800at 60.706 kb on + strand, within ABIE40_RS19800at 60.707 kb on - strand, within ABIE40_RS19800at 60.707 kb on - strand, within ABIE40_RS19800at 60.707 kb on - strand, within ABIE40_RS19800at 60.707 kb on - strand, within ABIE40_RS19800at 60.707 kb on - strand, within ABIE40_RS19800at 60.707 kb on - strand, within ABIE40_RS19800at 60.707 kb on - strand, within ABIE40_RS19800at 60.707 kb on - strand, within ABIE40_RS19800at 60.707 kb on - strand, within ABIE40_RS19800at 60.707 kb on - strand, within ABIE40_RS19800at 60.707 kb on - strand, within ABIE40_RS19800at 60.754 kb on - strand, within ABIE40_RS19800at 60.900 kb on + strand, within ABIE40_RS19805at 61.028 kb on + strand, within ABIE40_RS19805at 61.076 kb on + strand, within ABIE40_RS19805at 61.286 kb on + strandat 61.287 kb on - strandat 61.296 kb on + strandat 61.387 kb on + strandat 61.388 kb on - strandat 61.456 kb on + strandat 61.456 kb on + strandat 61.456 kb on + strandat 61.456 kb on + strandat 61.456 kb on + strandat 61.457 kb on - strandat 61.457 kb on - strandat 61.457 kb on - strandat 61.459 kb on + strandat 61.460 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 10.6206 mM
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59,067 - ABIE40_RS19790 0.68 -2.7
59,067 - ABIE40_RS19790 0.68 -2.9
59,112 - ABIE40_RS19790 0.70 -0.1
59,225 + ABIE40_RS19790 0.74 -0.9
59,225 + ABIE40_RS19790 0.74 -2.1
59,225 + ABIE40_RS19790 0.74 -2.4
59,226 - ABIE40_RS19790 0.74 -3.9
59,226 - ABIE40_RS19790 0.74 -1.1
59,304 + ABIE40_RS19790 0.77 -0.6
59,315 + ABIE40_RS19790 0.77 -0.8
59,315 + ABIE40_RS19790 0.77 -4.1
59,315 + ABIE40_RS19790 0.77 -2.7
59,315 + ABIE40_RS19790 0.77 -3.5
59,315 + ABIE40_RS19790 0.77 +0.0
59,315 + ABIE40_RS19790 0.77 -0.8
59,315 + ABIE40_RS19790 0.77 -2.8
59,316 - ABIE40_RS19790 0.77 -3.2
59,316 - ABIE40_RS19790 0.77 -1.2
59,316 - ABIE40_RS19790 0.77 -2.1
59,318 - ABIE40_RS19790 0.77 +1.7
59,401 + ABIE40_RS19790 0.80 -0.6
59,401 + ABIE40_RS19790 0.80 -0.9
59,401 + ABIE40_RS19790 0.80 -1.7
59,401 + ABIE40_RS19790 0.80 -1.6
59,402 - ABIE40_RS19790 0.80 -0.4
59,402 - ABIE40_RS19790 0.80 -0.2
59,436 - ABIE40_RS19790 0.82 -3.5
59,436 - ABIE40_RS19790 0.82 -1.6
59,436 - ABIE40_RS19790 0.82 -2.7
59,501 + ABIE40_RS19790 0.84 +0.0
59,501 + ABIE40_RS19790 0.84 -3.0
59,570 + ABIE40_RS19790 0.87 +1.9
59,571 - ABIE40_RS19790 0.87 -0.4
59,656 + ABIE40_RS19790 0.90 -1.8
59,657 - ABIE40_RS19790 0.90 -0.7
59,687 + -0.1
59,908 + -1.3
59,908 + +1.2
59,925 + +1.0
59,931 - -1.1
59,931 - +0.2
59,933 + -0.2
59,933 + -2.2
59,939 - -1.5
59,981 + -0.9
59,981 + -0.7
59,989 + -0.6
60,146 + ABIE40_RS19795 0.22 -2.2
60,146 + ABIE40_RS19795 0.22 +1.1
60,197 + ABIE40_RS19795 0.33 -2.4
60,197 + ABIE40_RS19795 0.33 -1.2
60,197 + ABIE40_RS19795 0.33 -2.4
60,197 + ABIE40_RS19795 0.33 +0.5
60,560 + ABIE40_RS19800 0.15 +0.0
60,560 + ABIE40_RS19800 0.15 +0.2
60,560 + ABIE40_RS19800 0.15 -0.6
60,560 + ABIE40_RS19800 0.15 -0.1
60,561 - ABIE40_RS19800 0.16 -1.8
60,561 - ABIE40_RS19800 0.16 -2.2
60,561 - ABIE40_RS19800 0.16 +0.1
60,561 - ABIE40_RS19800 0.16 -1.7
60,561 - ABIE40_RS19800 0.16 +0.2
60,689 - ABIE40_RS19800 0.59 -1.9
60,702 + ABIE40_RS19800 0.64 -1.7
60,703 - ABIE40_RS19800 0.64 -1.1
60,703 - ABIE40_RS19800 0.64 -3.2
60,703 - ABIE40_RS19800 0.64 +2.1
60,706 + ABIE40_RS19800 0.65 +1.3
60,706 + ABIE40_RS19800 0.65 +0.5
60,706 + ABIE40_RS19800 0.65 -1.2
60,706 + ABIE40_RS19800 0.65 +1.7
60,706 + ABIE40_RS19800 0.65 +0.6
60,707 - ABIE40_RS19800 0.65 -0.4
60,707 - ABIE40_RS19800 0.65 -0.6
60,707 - ABIE40_RS19800 0.65 +0.8
60,707 - ABIE40_RS19800 0.65 +2.2
60,707 - ABIE40_RS19800 0.65 -3.0
60,707 - ABIE40_RS19800 0.65 -0.7
60,707 - ABIE40_RS19800 0.65 -1.8
60,707 - ABIE40_RS19800 0.65 +1.3
60,707 - ABIE40_RS19800 0.65 +2.2
60,707 - ABIE40_RS19800 0.65 -2.5
60,707 - ABIE40_RS19800 0.65 +1.8
60,754 - ABIE40_RS19800 0.81 -1.4
60,900 + ABIE40_RS19805 0.20 -1.3
61,028 + ABIE40_RS19805 0.48 -2.8
61,076 + ABIE40_RS19805 0.58 -0.6
61,286 + +1.1
61,287 - -0.3
61,296 + -0.9
61,387 + -0.1
61,388 - -0.1
61,456 + +4.0
61,456 + -0.4
61,456 + -1.6
61,456 + +0.6
61,456 + +0.7
61,457 - -0.7
61,457 - +0.6
61,457 - +1.6
61,459 + -0.5
61,460 - -0.0

Or see this region's nucleotide sequence