Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS16695

Experiment: R2A with 3-octanone 10.6206 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS16690 and ABIE40_RS16695 are separated by 102 nucleotidesABIE40_RS16695 and ABIE40_RS16700 overlap by 7 nucleotides ABIE40_RS16690: ABIE40_RS16690 - LysR family transcriptional regulator, at 3,325,814 to 3,326,707 _RS16690 ABIE40_RS16695: ABIE40_RS16695 - DUF1007 family protein, at 3,326,810 to 3,327,451 _RS16695 ABIE40_RS16700: ABIE40_RS16700 - nickel/cobalt transporter, at 3,327,445 to 3,328,524 _RS16700 Position (kb) 3326 3327 3328Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 3325.843 kb on + strandat 3325.919 kb on + strand, within ABIE40_RS16690at 3325.919 kb on + strand, within ABIE40_RS16690at 3325.919 kb on + strand, within ABIE40_RS16690at 3325.920 kb on - strand, within ABIE40_RS16690at 3325.920 kb on - strand, within ABIE40_RS16690at 3325.920 kb on - strand, within ABIE40_RS16690at 3325.920 kb on - strand, within ABIE40_RS16690at 3326.006 kb on + strand, within ABIE40_RS16690at 3326.006 kb on + strand, within ABIE40_RS16690at 3326.006 kb on + strand, within ABIE40_RS16690at 3326.006 kb on + strand, within ABIE40_RS16690at 3326.006 kb on + strand, within ABIE40_RS16690at 3326.006 kb on + strand, within ABIE40_RS16690at 3326.006 kb on + strand, within ABIE40_RS16690at 3326.007 kb on - strand, within ABIE40_RS16690at 3326.007 kb on - strand, within ABIE40_RS16690at 3326.007 kb on - strand, within ABIE40_RS16690at 3326.008 kb on - strand, within ABIE40_RS16690at 3326.009 kb on + strand, within ABIE40_RS16690at 3326.009 kb on + strand, within ABIE40_RS16690at 3326.010 kb on - strand, within ABIE40_RS16690at 3326.344 kb on + strand, within ABIE40_RS16690at 3326.345 kb on - strand, within ABIE40_RS16690at 3326.423 kb on + strand, within ABIE40_RS16690at 3326.423 kb on + strand, within ABIE40_RS16690at 3326.423 kb on + strand, within ABIE40_RS16690at 3326.423 kb on + strand, within ABIE40_RS16690at 3326.424 kb on - strand, within ABIE40_RS16690at 3326.424 kb on - strand, within ABIE40_RS16690at 3326.424 kb on - strand, within ABIE40_RS16690at 3326.437 kb on + strand, within ABIE40_RS16690at 3326.437 kb on + strand, within ABIE40_RS16690at 3326.437 kb on + strand, within ABIE40_RS16690at 3326.437 kb on + strand, within ABIE40_RS16690at 3326.438 kb on - strand, within ABIE40_RS16690at 3326.438 kb on - strand, within ABIE40_RS16690at 3326.438 kb on - strand, within ABIE40_RS16690at 3326.438 kb on - strand, within ABIE40_RS16690at 3326.438 kb on - strand, within ABIE40_RS16690at 3326.438 kb on - strand, within ABIE40_RS16690at 3326.438 kb on - strand, within ABIE40_RS16690at 3326.438 kb on - strand, within ABIE40_RS16690at 3326.438 kb on - strand, within ABIE40_RS16690at 3326.594 kb on + strand, within ABIE40_RS16690at 3326.594 kb on + strand, within ABIE40_RS16690at 3326.594 kb on + strand, within ABIE40_RS16690at 3326.594 kb on + strand, within ABIE40_RS16690at 3326.594 kb on + strand, within ABIE40_RS16690at 3326.595 kb on - strand, within ABIE40_RS16690at 3326.595 kb on - strand, within ABIE40_RS16690at 3326.595 kb on - strand, within ABIE40_RS16690at 3326.595 kb on - strand, within ABIE40_RS16690at 3326.595 kb on - strand, within ABIE40_RS16690at 3326.619 kb on - strandat 3326.628 kb on - strandat 3326.675 kb on + strandat 3326.800 kb on - strandat 3327.075 kb on - strand, within ABIE40_RS16695at 3327.075 kb on - strand, within ABIE40_RS16695at 3327.080 kb on + strand, within ABIE40_RS16695at 3327.080 kb on + strand, within ABIE40_RS16695at 3327.081 kb on - strand, within ABIE40_RS16695at 3327.081 kb on - strand, within ABIE40_RS16695at 3327.081 kb on - strand, within ABIE40_RS16695at 3327.081 kb on - strand, within ABIE40_RS16695at 3327.083 kb on + strand, within ABIE40_RS16695at 3327.083 kb on + strand, within ABIE40_RS16695at 3327.083 kb on + strand, within ABIE40_RS16695at 3327.083 kb on + strand, within ABIE40_RS16695at 3327.083 kb on + strand, within ABIE40_RS16695at 3327.083 kb on + strand, within ABIE40_RS16695at 3327.083 kb on + strand, within ABIE40_RS16695at 3327.084 kb on - strand, within ABIE40_RS16695at 3327.084 kb on - strand, within ABIE40_RS16695at 3327.084 kb on - strand, within ABIE40_RS16695at 3327.084 kb on - strand, within ABIE40_RS16695at 3327.084 kb on - strand, within ABIE40_RS16695at 3327.121 kb on - strand, within ABIE40_RS16695at 3327.121 kb on - strand, within ABIE40_RS16695at 3327.149 kb on + strand, within ABIE40_RS16695at 3327.150 kb on - strand, within ABIE40_RS16695at 3327.233 kb on + strand, within ABIE40_RS16695at 3327.233 kb on + strand, within ABIE40_RS16695at 3327.234 kb on - strand, within ABIE40_RS16695at 3327.234 kb on - strand, within ABIE40_RS16695at 3327.234 kb on - strand, within ABIE40_RS16695at 3327.234 kb on - strand, within ABIE40_RS16695at 3327.248 kb on + strand, within ABIE40_RS16695at 3327.249 kb on - strand, within ABIE40_RS16695at 3327.250 kb on + strand, within ABIE40_RS16695at 3327.250 kb on + strand, within ABIE40_RS16695at 3327.250 kb on + strand, within ABIE40_RS16695at 3327.250 kb on + strand, within ABIE40_RS16695at 3327.250 kb on + strand, within ABIE40_RS16695at 3327.251 kb on - strand, within ABIE40_RS16695at 3327.251 kb on - strand, within ABIE40_RS16695at 3327.251 kb on - strand, within ABIE40_RS16695at 3327.251 kb on - strand, within ABIE40_RS16695at 3327.251 kb on - strand, within ABIE40_RS16695at 3327.469 kb on - strandat 3327.517 kb on + strandat 3327.517 kb on + strandat 3327.517 kb on + strandat 3327.518 kb on - strandat 3327.518 kb on - strandat 3327.518 kb on - strandat 3327.518 kb on - strandat 3327.598 kb on + strand, within ABIE40_RS16700at 3327.598 kb on + strand, within ABIE40_RS16700at 3327.598 kb on + strand, within ABIE40_RS16700at 3327.607 kb on + strand, within ABIE40_RS16700at 3327.608 kb on - strand, within ABIE40_RS16700at 3327.608 kb on - strand, within ABIE40_RS16700at 3327.608 kb on - strand, within ABIE40_RS16700at 3327.608 kb on - strand, within ABIE40_RS16700at 3327.625 kb on + strand, within ABIE40_RS16700at 3327.625 kb on + strand, within ABIE40_RS16700at 3327.625 kb on + strand, within ABIE40_RS16700at 3327.625 kb on + strand, within ABIE40_RS16700at 3327.625 kb on + strand, within ABIE40_RS16700at 3327.626 kb on - strand, within ABIE40_RS16700at 3327.626 kb on - strand, within ABIE40_RS16700at 3327.760 kb on + strand, within ABIE40_RS16700at 3327.760 kb on + strand, within ABIE40_RS16700at 3327.760 kb on + strand, within ABIE40_RS16700at 3327.760 kb on + strand, within ABIE40_RS16700at 3327.760 kb on + strand, within ABIE40_RS16700at 3327.760 kb on + strand, within ABIE40_RS16700at 3327.760 kb on + strand, within ABIE40_RS16700at 3327.760 kb on + strand, within ABIE40_RS16700at 3327.760 kb on + strand, within ABIE40_RS16700at 3327.760 kb on + strand, within ABIE40_RS16700at 3327.760 kb on + strand, within ABIE40_RS16700at 3327.761 kb on - strand, within ABIE40_RS16700at 3327.761 kb on - strand, within ABIE40_RS16700at 3327.761 kb on - strand, within ABIE40_RS16700at 3327.761 kb on - strand, within ABIE40_RS16700at 3327.761 kb on - strand, within ABIE40_RS16700at 3327.761 kb on - strand, within ABIE40_RS16700at 3327.762 kb on + strand, within ABIE40_RS16700at 3327.762 kb on + strand, within ABIE40_RS16700at 3327.762 kb on + strand, within ABIE40_RS16700at 3327.762 kb on + strand, within ABIE40_RS16700at 3327.762 kb on + strand, within ABIE40_RS16700at 3327.762 kb on + strand, within ABIE40_RS16700at 3327.762 kb on + strand, within ABIE40_RS16700at 3327.763 kb on - strand, within ABIE40_RS16700at 3327.763 kb on - strand, within ABIE40_RS16700at 3327.763 kb on - strand, within ABIE40_RS16700at 3327.763 kb on - strand, within ABIE40_RS16700at 3327.763 kb on - strand, within ABIE40_RS16700at 3327.763 kb on - strand, within ABIE40_RS16700at 3327.763 kb on - strand, within ABIE40_RS16700at 3327.763 kb on - strand, within ABIE40_RS16700at 3327.763 kb on - strand, within ABIE40_RS16700at 3327.810 kb on + strand, within ABIE40_RS16700at 3327.810 kb on + strand, within ABIE40_RS16700at 3327.811 kb on - strand, within ABIE40_RS16700at 3327.811 kb on - strand, within ABIE40_RS16700at 3327.811 kb on - strand, within ABIE40_RS16700at 3327.811 kb on - strand, within ABIE40_RS16700at 3327.959 kb on + strand, within ABIE40_RS16700at 3327.960 kb on - strand, within ABIE40_RS16700at 3328.087 kb on + strand, within ABIE40_RS16700at 3328.170 kb on + strand, within ABIE40_RS16700at 3328.170 kb on + strand, within ABIE40_RS16700at 3328.171 kb on - strand, within ABIE40_RS16700at 3328.171 kb on - strand, within ABIE40_RS16700at 3328.171 kb on - strand, within ABIE40_RS16700at 3328.171 kb on - strand, within ABIE40_RS16700at 3328.201 kb on - strand, within ABIE40_RS16700

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 10.6206 mM
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3,325,843 + -0.5
3,325,919 + ABIE40_RS16690 0.12 -0.4
3,325,919 + ABIE40_RS16690 0.12 +1.9
3,325,919 + ABIE40_RS16690 0.12 +0.4
3,325,920 - ABIE40_RS16690 0.12 +0.4
3,325,920 - ABIE40_RS16690 0.12 -2.4
3,325,920 - ABIE40_RS16690 0.12 +0.0
3,325,920 - ABIE40_RS16690 0.12 -3.1
3,326,006 + ABIE40_RS16690 0.21 -0.6
3,326,006 + ABIE40_RS16690 0.21 +0.9
3,326,006 + ABIE40_RS16690 0.21 -0.8
3,326,006 + ABIE40_RS16690 0.21 -0.3
3,326,006 + ABIE40_RS16690 0.21 -2.7
3,326,006 + ABIE40_RS16690 0.21 -1.6
3,326,006 + ABIE40_RS16690 0.21 +2.7
3,326,007 - ABIE40_RS16690 0.22 -1.8
3,326,007 - ABIE40_RS16690 0.22 +0.4
3,326,007 - ABIE40_RS16690 0.22 -2.9
3,326,008 - ABIE40_RS16690 0.22 -0.3
3,326,009 + ABIE40_RS16690 0.22 -0.0
3,326,009 + ABIE40_RS16690 0.22 +0.3
3,326,010 - ABIE40_RS16690 0.22 +0.4
3,326,344 + ABIE40_RS16690 0.59 -1.3
3,326,345 - ABIE40_RS16690 0.59 +1.0
3,326,423 + ABIE40_RS16690 0.68 -1.3
3,326,423 + ABIE40_RS16690 0.68 -1.5
3,326,423 + ABIE40_RS16690 0.68 -1.7
3,326,423 + ABIE40_RS16690 0.68 +0.4
3,326,424 - ABIE40_RS16690 0.68 +0.9
3,326,424 - ABIE40_RS16690 0.68 -0.9
3,326,424 - ABIE40_RS16690 0.68 +1.3
3,326,437 + ABIE40_RS16690 0.70 -0.7
3,326,437 + ABIE40_RS16690 0.70 +0.4
3,326,437 + ABIE40_RS16690 0.70 -1.4
3,326,437 + ABIE40_RS16690 0.70 -1.3
3,326,438 - ABIE40_RS16690 0.70 -3.5
3,326,438 - ABIE40_RS16690 0.70 -3.4
3,326,438 - ABIE40_RS16690 0.70 +0.2
3,326,438 - ABIE40_RS16690 0.70 +1.5
3,326,438 - ABIE40_RS16690 0.70 +0.7
3,326,438 - ABIE40_RS16690 0.70 +0.8
3,326,438 - ABIE40_RS16690 0.70 -0.8
3,326,438 - ABIE40_RS16690 0.70 +0.2
3,326,438 - ABIE40_RS16690 0.70 -1.1
3,326,594 + ABIE40_RS16690 0.87 +3.3
3,326,594 + ABIE40_RS16690 0.87 +1.0
3,326,594 + ABIE40_RS16690 0.87 -3.5
3,326,594 + ABIE40_RS16690 0.87 -1.3
3,326,594 + ABIE40_RS16690 0.87 +0.9
3,326,595 - ABIE40_RS16690 0.87 +1.6
3,326,595 - ABIE40_RS16690 0.87 +5.1
3,326,595 - ABIE40_RS16690 0.87 -2.1
3,326,595 - ABIE40_RS16690 0.87 -1.7
3,326,595 - ABIE40_RS16690 0.87 +1.7
3,326,619 - +0.8
3,326,628 - +0.4
3,326,675 + +0.6
3,326,800 - +1.0
3,327,075 - ABIE40_RS16695 0.41 +0.5
3,327,075 - ABIE40_RS16695 0.41 -1.0
3,327,080 + ABIE40_RS16695 0.42 -4.3
3,327,080 + ABIE40_RS16695 0.42 +1.2
3,327,081 - ABIE40_RS16695 0.42 -0.9
3,327,081 - ABIE40_RS16695 0.42 -2.8
3,327,081 - ABIE40_RS16695 0.42 -0.8
3,327,081 - ABIE40_RS16695 0.42 +1.4
3,327,083 + ABIE40_RS16695 0.43 +0.3
3,327,083 + ABIE40_RS16695 0.43 -1.3
3,327,083 + ABIE40_RS16695 0.43 +1.2
3,327,083 + ABIE40_RS16695 0.43 -0.5
3,327,083 + ABIE40_RS16695 0.43 -4.3
3,327,083 + ABIE40_RS16695 0.43 -3.0
3,327,083 + ABIE40_RS16695 0.43 -1.4
3,327,084 - ABIE40_RS16695 0.43 +0.6
3,327,084 - ABIE40_RS16695 0.43 +0.3
3,327,084 - ABIE40_RS16695 0.43 -2.3
3,327,084 - ABIE40_RS16695 0.43 -0.9
3,327,084 - ABIE40_RS16695 0.43 -1.4
3,327,121 - ABIE40_RS16695 0.48 -1.1
3,327,121 - ABIE40_RS16695 0.48 -2.7
3,327,149 + ABIE40_RS16695 0.53 -0.1
3,327,150 - ABIE40_RS16695 0.53 -2.3
3,327,233 + ABIE40_RS16695 0.66 +0.1
3,327,233 + ABIE40_RS16695 0.66 -4.2
3,327,234 - ABIE40_RS16695 0.66 -0.6
3,327,234 - ABIE40_RS16695 0.66 -1.9
3,327,234 - ABIE40_RS16695 0.66 +1.5
3,327,234 - ABIE40_RS16695 0.66 -2.4
3,327,248 + ABIE40_RS16695 0.68 -1.9
3,327,249 - ABIE40_RS16695 0.68 -2.6
3,327,250 + ABIE40_RS16695 0.69 -0.8
3,327,250 + ABIE40_RS16695 0.69 +2.5
3,327,250 + ABIE40_RS16695 0.69 +0.1
3,327,250 + ABIE40_RS16695 0.69 +1.2
3,327,250 + ABIE40_RS16695 0.69 -1.0
3,327,251 - ABIE40_RS16695 0.69 +1.0
3,327,251 - ABIE40_RS16695 0.69 -4.0
3,327,251 - ABIE40_RS16695 0.69 +3.3
3,327,251 - ABIE40_RS16695 0.69 -2.5
3,327,251 - ABIE40_RS16695 0.69 -2.2
3,327,469 - -2.1
3,327,517 + -3.6
3,327,517 + -0.5
3,327,517 + +0.4
3,327,518 - -0.2
3,327,518 - -1.3
3,327,518 - -0.2
3,327,518 - -1.3
3,327,598 + ABIE40_RS16700 0.14 +0.4
3,327,598 + ABIE40_RS16700 0.14 +0.3
3,327,598 + ABIE40_RS16700 0.14 +0.1
3,327,607 + ABIE40_RS16700 0.15 -0.3
3,327,608 - ABIE40_RS16700 0.15 +0.1
3,327,608 - ABIE40_RS16700 0.15 -1.4
3,327,608 - ABIE40_RS16700 0.15 -0.5
3,327,608 - ABIE40_RS16700 0.15 +3.4
3,327,625 + ABIE40_RS16700 0.17 +0.5
3,327,625 + ABIE40_RS16700 0.17 +0.3
3,327,625 + ABIE40_RS16700 0.17 -1.6
3,327,625 + ABIE40_RS16700 0.17 -0.4
3,327,625 + ABIE40_RS16700 0.17 -2.7
3,327,626 - ABIE40_RS16700 0.17 +0.2
3,327,626 - ABIE40_RS16700 0.17 +0.4
3,327,760 + ABIE40_RS16700 0.29 +2.6
3,327,760 + ABIE40_RS16700 0.29 -0.3
3,327,760 + ABIE40_RS16700 0.29 +0.6
3,327,760 + ABIE40_RS16700 0.29 -0.0
3,327,760 + ABIE40_RS16700 0.29 -0.2
3,327,760 + ABIE40_RS16700 0.29 +0.2
3,327,760 + ABIE40_RS16700 0.29 +0.5
3,327,760 + ABIE40_RS16700 0.29 -1.9
3,327,760 + ABIE40_RS16700 0.29 +1.3
3,327,760 + ABIE40_RS16700 0.29 -2.1
3,327,760 + ABIE40_RS16700 0.29 +1.1
3,327,761 - ABIE40_RS16700 0.29 -0.1
3,327,761 - ABIE40_RS16700 0.29 +0.0
3,327,761 - ABIE40_RS16700 0.29 +1.1
3,327,761 - ABIE40_RS16700 0.29 -2.4
3,327,761 - ABIE40_RS16700 0.29 +0.7
3,327,761 - ABIE40_RS16700 0.29 -0.9
3,327,762 + ABIE40_RS16700 0.29 +0.9
3,327,762 + ABIE40_RS16700 0.29 +1.9
3,327,762 + ABIE40_RS16700 0.29 -2.1
3,327,762 + ABIE40_RS16700 0.29 +0.8
3,327,762 + ABIE40_RS16700 0.29 +0.0
3,327,762 + ABIE40_RS16700 0.29 -1.6
3,327,762 + ABIE40_RS16700 0.29 +1.7
3,327,763 - ABIE40_RS16700 0.29 -2.4
3,327,763 - ABIE40_RS16700 0.29 +0.8
3,327,763 - ABIE40_RS16700 0.29 -0.4
3,327,763 - ABIE40_RS16700 0.29 +0.2
3,327,763 - ABIE40_RS16700 0.29 -0.6
3,327,763 - ABIE40_RS16700 0.29 -0.8
3,327,763 - ABIE40_RS16700 0.29 -3.5
3,327,763 - ABIE40_RS16700 0.29 -0.8
3,327,763 - ABIE40_RS16700 0.29 -0.3
3,327,810 + ABIE40_RS16700 0.34 +0.3
3,327,810 + ABIE40_RS16700 0.34 -1.4
3,327,811 - ABIE40_RS16700 0.34 +0.2
3,327,811 - ABIE40_RS16700 0.34 -0.4
3,327,811 - ABIE40_RS16700 0.34 -1.7
3,327,811 - ABIE40_RS16700 0.34 +0.2
3,327,959 + ABIE40_RS16700 0.48 -1.8
3,327,960 - ABIE40_RS16700 0.48 -3.5
3,328,087 + ABIE40_RS16700 0.59 -1.7
3,328,170 + ABIE40_RS16700 0.67 +0.6
3,328,170 + ABIE40_RS16700 0.67 +2.8
3,328,171 - ABIE40_RS16700 0.67 -0.9
3,328,171 - ABIE40_RS16700 0.67 +0.2
3,328,171 - ABIE40_RS16700 0.67 -3.5
3,328,171 - ABIE40_RS16700 0.67 +0.0
3,328,201 - ABIE40_RS16700 0.70 +1.1

Or see this region's nucleotide sequence