Experiment: R2A with 3-octanone 10.6206 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS08215 and ABIE40_RS08220 are separated by 2 nucleotides ABIE40_RS08220 and ABIE40_RS08225 are separated by 107 nucleotides ABIE40_RS08225 and ABIE40_RS08230 are separated by 51 nucleotides
ABIE40_RS08215: ABIE40_RS08215 - GGDEF domain-containing protein, at 1,582,569 to 1,583,837
_RS08215
ABIE40_RS08220: ABIE40_RS08220 - SDR family oxidoreductase, at 1,583,840 to 1,584,616
_RS08220
ABIE40_RS08225: ABIE40_RS08225 - TetR/AcrR family transcriptional regulator, at 1,584,724 to 1,585,308
_RS08225
ABIE40_RS08230: ABIE40_RS08230 - FMN-dependent NADH-azoreductase, at 1,585,360 to 1,585,974
_RS08230
Position (kb) 1583
1584
1585 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1582.848 kb on + strand, within ABIE40_RS08215 at 1582.849 kb on - strand, within ABIE40_RS08215 at 1582.849 kb on - strand, within ABIE40_RS08215 at 1583.028 kb on + strand, within ABIE40_RS08215 at 1583.029 kb on - strand, within ABIE40_RS08215 at 1583.029 kb on - strand, within ABIE40_RS08215 at 1583.029 kb on - strand, within ABIE40_RS08215 at 1583.047 kb on - strand, within ABIE40_RS08215 at 1583.047 kb on - strand, within ABIE40_RS08215 at 1583.136 kb on + strand, within ABIE40_RS08215 at 1583.136 kb on + strand, within ABIE40_RS08215 at 1583.136 kb on + strand, within ABIE40_RS08215 at 1583.136 kb on + strand, within ABIE40_RS08215 at 1583.137 kb on - strand, within ABIE40_RS08215 at 1583.137 kb on - strand, within ABIE40_RS08215 at 1583.137 kb on - strand, within ABIE40_RS08215 at 1583.226 kb on + strand, within ABIE40_RS08215 at 1583.235 kb on + strand, within ABIE40_RS08215 at 1583.235 kb on + strand, within ABIE40_RS08215 at 1583.235 kb on + strand, within ABIE40_RS08215 at 1583.235 kb on + strand, within ABIE40_RS08215 at 1583.235 kb on + strand, within ABIE40_RS08215 at 1583.236 kb on - strand, within ABIE40_RS08215 at 1583.236 kb on - strand, within ABIE40_RS08215 at 1583.236 kb on - strand, within ABIE40_RS08215 at 1583.236 kb on - strand, within ABIE40_RS08215 at 1583.236 kb on - strand, within ABIE40_RS08215 at 1583.313 kb on + strand, within ABIE40_RS08215 at 1583.313 kb on + strand, within ABIE40_RS08215 at 1583.314 kb on - strand, within ABIE40_RS08215 at 1583.361 kb on + strand, within ABIE40_RS08215 at 1583.361 kb on + strand, within ABIE40_RS08215 at 1583.362 kb on - strand, within ABIE40_RS08215 at 1583.362 kb on - strand, within ABIE40_RS08215 at 1583.362 kb on - strand, within ABIE40_RS08215 at 1583.427 kb on + strand, within ABIE40_RS08215 at 1583.428 kb on - strand, within ABIE40_RS08215 at 1583.468 kb on + strand, within ABIE40_RS08215 at 1583.772 kb on + strand at 1583.838 kb on + strand at 1583.839 kb on - strand at 1583.839 kb on - strand at 1584.171 kb on + strand, within ABIE40_RS08220 at 1584.171 kb on + strand, within ABIE40_RS08220 at 1584.171 kb on + strand, within ABIE40_RS08220 at 1584.171 kb on + strand, within ABIE40_RS08220 at 1584.172 kb on - strand, within ABIE40_RS08220 at 1584.172 kb on - strand, within ABIE40_RS08220 at 1584.172 kb on - strand, within ABIE40_RS08220 at 1584.172 kb on - strand, within ABIE40_RS08220 at 1584.172 kb on - strand, within ABIE40_RS08220 at 1584.172 kb on - strand, within ABIE40_RS08220 at 1584.292 kb on + strand, within ABIE40_RS08220 at 1584.292 kb on + strand, within ABIE40_RS08220 at 1584.374 kb on - strand, within ABIE40_RS08220 at 1584.497 kb on - strand, within ABIE40_RS08220 at 1584.575 kb on - strand at 1584.575 kb on - strand at 1584.575 kb on - strand at 1584.831 kb on + strand, within ABIE40_RS08225 at 1584.831 kb on + strand, within ABIE40_RS08225 at 1584.832 kb on - strand, within ABIE40_RS08225 at 1584.832 kb on - strand, within ABIE40_RS08225 at 1584.865 kb on + strand, within ABIE40_RS08225 at 1584.865 kb on + strand, within ABIE40_RS08225 at 1584.865 kb on + strand, within ABIE40_RS08225 at 1584.865 kb on + strand, within ABIE40_RS08225 at 1584.866 kb on - strand, within ABIE40_RS08225 at 1584.866 kb on - strand, within ABIE40_RS08225 at 1584.986 kb on - strand, within ABIE40_RS08225 at 1584.998 kb on - strand, within ABIE40_RS08225 at 1584.998 kb on - strand, within ABIE40_RS08225 at 1584.998 kb on - strand, within ABIE40_RS08225 at 1585.346 kb on - strand at 1585.346 kb on - strand at 1585.346 kb on - strand at 1585.451 kb on + strand, within ABIE40_RS08230 at 1585.451 kb on + strand, within ABIE40_RS08230 at 1585.451 kb on + strand, within ABIE40_RS08230 at 1585.451 kb on + strand, within ABIE40_RS08230 at 1585.452 kb on - strand, within ABIE40_RS08230 at 1585.452 kb on - strand, within ABIE40_RS08230 at 1585.452 kb on - strand, within ABIE40_RS08230 at 1585.452 kb on - strand, within ABIE40_RS08230 at 1585.452 kb on - strand, within ABIE40_RS08230 at 1585.452 kb on - strand, within ABIE40_RS08230 at 1585.452 kb on - strand, within ABIE40_RS08230 at 1585.503 kb on - strand, within ABIE40_RS08230 at 1585.503 kb on - strand, within ABIE40_RS08230 at 1585.571 kb on + strand, within ABIE40_RS08230 at 1585.571 kb on + strand, within ABIE40_RS08230 at 1585.571 kb on + strand, within ABIE40_RS08230 at 1585.572 kb on - strand, within ABIE40_RS08230 at 1585.572 kb on - strand, within ABIE40_RS08230 at 1585.572 kb on - strand, within ABIE40_RS08230 at 1585.572 kb on - strand, within ABIE40_RS08230 at 1585.572 kb on - strand, within ABIE40_RS08230 at 1585.572 kb on - strand, within ABIE40_RS08230 at 1585.572 kb on - strand, within ABIE40_RS08230 at 1585.572 kb on - strand, within ABIE40_RS08230 at 1585.616 kb on + strand, within ABIE40_RS08230 at 1585.616 kb on + strand, within ABIE40_RS08230 at 1585.616 kb on + strand, within ABIE40_RS08230
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 10.6206 mM remove 1,582,848 + ABIE40_RS08215 0.22 +1.6 1,582,849 - ABIE40_RS08215 0.22 +0.7 1,582,849 - ABIE40_RS08215 0.22 -2.3 1,583,028 + ABIE40_RS08215 0.36 -2.0 1,583,029 - ABIE40_RS08215 0.36 +0.1 1,583,029 - ABIE40_RS08215 0.36 -0.1 1,583,029 - ABIE40_RS08215 0.36 -0.3 1,583,047 - ABIE40_RS08215 0.38 +0.5 1,583,047 - ABIE40_RS08215 0.38 +1.9 1,583,136 + ABIE40_RS08215 0.45 -0.4 1,583,136 + ABIE40_RS08215 0.45 -0.3 1,583,136 + ABIE40_RS08215 0.45 -1.7 1,583,136 + ABIE40_RS08215 0.45 +0.1 1,583,137 - ABIE40_RS08215 0.45 -0.7 1,583,137 - ABIE40_RS08215 0.45 +0.2 1,583,137 - ABIE40_RS08215 0.45 +1.5 1,583,226 + ABIE40_RS08215 0.52 -0.9 1,583,235 + ABIE40_RS08215 0.52 -0.4 1,583,235 + ABIE40_RS08215 0.52 -0.6 1,583,235 + ABIE40_RS08215 0.52 -2.3 1,583,235 + ABIE40_RS08215 0.52 -0.0 1,583,235 + ABIE40_RS08215 0.52 +0.5 1,583,236 - ABIE40_RS08215 0.53 +0.6 1,583,236 - ABIE40_RS08215 0.53 -2.1 1,583,236 - ABIE40_RS08215 0.53 -0.4 1,583,236 - ABIE40_RS08215 0.53 -1.0 1,583,236 - ABIE40_RS08215 0.53 -0.4 1,583,313 + ABIE40_RS08215 0.59 -0.4 1,583,313 + ABIE40_RS08215 0.59 +1.0 1,583,314 - ABIE40_RS08215 0.59 -0.0 1,583,361 + ABIE40_RS08215 0.62 -1.7 1,583,361 + ABIE40_RS08215 0.62 -0.6 1,583,362 - ABIE40_RS08215 0.62 +1.1 1,583,362 - ABIE40_RS08215 0.62 +0.5 1,583,362 - ABIE40_RS08215 0.62 -2.6 1,583,427 + ABIE40_RS08215 0.68 -1.2 1,583,428 - ABIE40_RS08215 0.68 +0.6 1,583,468 + ABIE40_RS08215 0.71 -0.8 1,583,772 + -0.4 1,583,838 + -2.5 1,583,839 - +1.3 1,583,839 - -2.1 1,584,171 + ABIE40_RS08220 0.43 +0.5 1,584,171 + ABIE40_RS08220 0.43 -2.8 1,584,171 + ABIE40_RS08220 0.43 -0.1 1,584,171 + ABIE40_RS08220 0.43 +2.4 1,584,172 - ABIE40_RS08220 0.43 +0.4 1,584,172 - ABIE40_RS08220 0.43 -0.4 1,584,172 - ABIE40_RS08220 0.43 +3.4 1,584,172 - ABIE40_RS08220 0.43 +0.4 1,584,172 - ABIE40_RS08220 0.43 -1.8 1,584,172 - ABIE40_RS08220 0.43 +1.5 1,584,292 + ABIE40_RS08220 0.58 +0.9 1,584,292 + ABIE40_RS08220 0.58 +0.2 1,584,374 - ABIE40_RS08220 0.69 +0.7 1,584,497 - ABIE40_RS08220 0.85 -1.0 1,584,575 - +2.0 1,584,575 - -0.8 1,584,575 - -0.8 1,584,831 + ABIE40_RS08225 0.18 -2.5 1,584,831 + ABIE40_RS08225 0.18 -2.5 1,584,832 - ABIE40_RS08225 0.18 -1.7 1,584,832 - ABIE40_RS08225 0.18 -1.6 1,584,865 + ABIE40_RS08225 0.24 -0.8 1,584,865 + ABIE40_RS08225 0.24 +0.6 1,584,865 + ABIE40_RS08225 0.24 -3.2 1,584,865 + ABIE40_RS08225 0.24 -1.0 1,584,866 - ABIE40_RS08225 0.24 -1.5 1,584,866 - ABIE40_RS08225 0.24 +0.6 1,584,986 - ABIE40_RS08225 0.45 +0.2 1,584,998 - ABIE40_RS08225 0.47 -2.6 1,584,998 - ABIE40_RS08225 0.47 -2.5 1,584,998 - ABIE40_RS08225 0.47 -1.9 1,585,346 - -0.3 1,585,346 - -0.4 1,585,346 - +1.0 1,585,451 + ABIE40_RS08230 0.15 -0.6 1,585,451 + ABIE40_RS08230 0.15 +0.3 1,585,451 + ABIE40_RS08230 0.15 +1.2 1,585,451 + ABIE40_RS08230 0.15 +2.2 1,585,452 - ABIE40_RS08230 0.15 +0.5 1,585,452 - ABIE40_RS08230 0.15 -0.4 1,585,452 - ABIE40_RS08230 0.15 -0.1 1,585,452 - ABIE40_RS08230 0.15 +1.7 1,585,452 - ABIE40_RS08230 0.15 +1.0 1,585,452 - ABIE40_RS08230 0.15 +1.5 1,585,452 - ABIE40_RS08230 0.15 +0.3 1,585,503 - ABIE40_RS08230 0.23 +0.8 1,585,503 - ABIE40_RS08230 0.23 +0.5 1,585,571 + ABIE40_RS08230 0.34 +1.4 1,585,571 + ABIE40_RS08230 0.34 -0.1 1,585,571 + ABIE40_RS08230 0.34 -0.6 1,585,572 - ABIE40_RS08230 0.34 +1.2 1,585,572 - ABIE40_RS08230 0.34 -3.1 1,585,572 - ABIE40_RS08230 0.34 +0.4 1,585,572 - ABIE40_RS08230 0.34 +1.3 1,585,572 - ABIE40_RS08230 0.34 +0.8 1,585,572 - ABIE40_RS08230 0.34 +0.4 1,585,572 - ABIE40_RS08230 0.34 +1.1 1,585,572 - ABIE40_RS08230 0.34 +1.8 1,585,616 + ABIE40_RS08230 0.42 -0.2 1,585,616 + ABIE40_RS08230 0.42 -0.9 1,585,616 + ABIE40_RS08230 0.42 +0.5
Or see this region's nucleotide sequence