Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS06830

Experiment: R2A with 3-octanone 10.6206 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS06825 and ABIE40_RS06830 overlap by 4 nucleotidesABIE40_RS06830 and ABIE40_RS06835 overlap by 4 nucleotides ABIE40_RS06825: ABIE40_RS06825 - cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB, at 1,337,667 to 1,340,219 _RS06825 ABIE40_RS06830: ABIE40_RS06830 - glycosyl hydrolase family 8, at 1,340,216 to 1,341,262 _RS06830 ABIE40_RS06835: ABIE40_RS06835 - cellulose synthase, at 1,341,259 to 1,343,679 _RS06835 Position (kb) 1340 1341 1342Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1339.410 kb on + strand, within ABIE40_RS06825at 1339.411 kb on - strand, within ABIE40_RS06825at 1339.416 kb on + strand, within ABIE40_RS06825at 1339.416 kb on + strand, within ABIE40_RS06825at 1339.417 kb on - strand, within ABIE40_RS06825at 1339.793 kb on + strand, within ABIE40_RS06825at 1339.794 kb on - strand, within ABIE40_RS06825at 1339.987 kb on + strandat 1340.007 kb on + strandat 1340.007 kb on + strandat 1340.007 kb on + strandat 1340.007 kb on + strandat 1340.007 kb on + strandat 1340.007 kb on + strandat 1340.007 kb on + strandat 1340.008 kb on - strandat 1340.008 kb on - strandat 1340.092 kb on - strandat 1340.092 kb on - strandat 1340.136 kb on + strandat 1340.136 kb on + strandat 1340.136 kb on + strandat 1340.136 kb on + strandat 1340.136 kb on + strandat 1340.137 kb on - strandat 1340.137 kb on - strandat 1340.137 kb on - strandat 1340.137 kb on - strandat 1340.137 kb on - strandat 1340.380 kb on + strand, within ABIE40_RS06830at 1340.381 kb on - strand, within ABIE40_RS06830at 1340.381 kb on - strand, within ABIE40_RS06830at 1340.381 kb on - strand, within ABIE40_RS06830at 1340.406 kb on - strand, within ABIE40_RS06830at 1340.423 kb on + strand, within ABIE40_RS06830at 1340.423 kb on + strand, within ABIE40_RS06830at 1340.424 kb on - strand, within ABIE40_RS06830at 1340.462 kb on + strand, within ABIE40_RS06830at 1340.585 kb on + strand, within ABIE40_RS06830at 1340.627 kb on + strand, within ABIE40_RS06830at 1340.627 kb on + strand, within ABIE40_RS06830at 1340.627 kb on + strand, within ABIE40_RS06830at 1340.627 kb on + strand, within ABIE40_RS06830at 1340.627 kb on + strand, within ABIE40_RS06830at 1340.627 kb on + strand, within ABIE40_RS06830at 1340.627 kb on + strand, within ABIE40_RS06830at 1340.628 kb on - strand, within ABIE40_RS06830at 1340.628 kb on - strand, within ABIE40_RS06830at 1340.628 kb on - strand, within ABIE40_RS06830at 1340.628 kb on - strand, within ABIE40_RS06830at 1340.628 kb on - strand, within ABIE40_RS06830at 1340.628 kb on - strand, within ABIE40_RS06830at 1340.629 kb on + strand, within ABIE40_RS06830at 1340.629 kb on + strand, within ABIE40_RS06830at 1340.629 kb on + strand, within ABIE40_RS06830at 1340.629 kb on + strand, within ABIE40_RS06830at 1340.630 kb on - strand, within ABIE40_RS06830at 1340.630 kb on - strand, within ABIE40_RS06830at 1340.630 kb on - strand, within ABIE40_RS06830at 1340.631 kb on + strand, within ABIE40_RS06830at 1340.631 kb on + strand, within ABIE40_RS06830at 1340.631 kb on + strand, within ABIE40_RS06830at 1340.631 kb on + strand, within ABIE40_RS06830at 1340.632 kb on - strand, within ABIE40_RS06830at 1340.632 kb on - strand, within ABIE40_RS06830at 1340.632 kb on - strand, within ABIE40_RS06830at 1340.632 kb on - strand, within ABIE40_RS06830at 1340.662 kb on - strand, within ABIE40_RS06830at 1340.768 kb on + strand, within ABIE40_RS06830at 1340.768 kb on + strand, within ABIE40_RS06830at 1340.768 kb on + strand, within ABIE40_RS06830at 1340.768 kb on + strand, within ABIE40_RS06830at 1340.768 kb on + strand, within ABIE40_RS06830at 1340.769 kb on - strand, within ABIE40_RS06830at 1340.769 kb on - strand, within ABIE40_RS06830at 1340.777 kb on + strand, within ABIE40_RS06830at 1340.778 kb on - strand, within ABIE40_RS06830at 1340.778 kb on - strand, within ABIE40_RS06830at 1340.778 kb on - strand, within ABIE40_RS06830at 1340.954 kb on + strand, within ABIE40_RS06830at 1340.954 kb on + strand, within ABIE40_RS06830at 1340.955 kb on - strand, within ABIE40_RS06830at 1340.955 kb on - strand, within ABIE40_RS06830at 1340.955 kb on - strand, within ABIE40_RS06830at 1340.956 kb on + strand, within ABIE40_RS06830at 1340.957 kb on - strand, within ABIE40_RS06830at 1340.957 kb on - strand, within ABIE40_RS06830at 1340.957 kb on - strand, within ABIE40_RS06830at 1340.957 kb on - strand, within ABIE40_RS06830at 1340.979 kb on - strand, within ABIE40_RS06830at 1340.979 kb on - strand, within ABIE40_RS06830at 1341.079 kb on + strand, within ABIE40_RS06830at 1341.151 kb on + strand, within ABIE40_RS06830at 1341.194 kb on + strandat 1341.194 kb on + strandat 1341.194 kb on + strandat 1341.194 kb on + strandat 1341.194 kb on + strandat 1341.197 kb on + strandat 1341.197 kb on + strandat 1341.688 kb on + strand, within ABIE40_RS06835at 1341.688 kb on + strand, within ABIE40_RS06835at 1341.751 kb on + strand, within ABIE40_RS06835at 1341.752 kb on - strand, within ABIE40_RS06835at 1341.752 kb on - strand, within ABIE40_RS06835at 1341.832 kb on + strand, within ABIE40_RS06835at 1341.832 kb on + strand, within ABIE40_RS06835at 1341.832 kb on + strand, within ABIE40_RS06835at 1341.982 kb on + strand, within ABIE40_RS06835at 1341.983 kb on - strand, within ABIE40_RS06835at 1342.038 kb on + strand, within ABIE40_RS06835at 1342.038 kb on + strand, within ABIE40_RS06835at 1342.040 kb on + strand, within ABIE40_RS06835at 1342.040 kb on + strand, within ABIE40_RS06835at 1342.040 kb on + strand, within ABIE40_RS06835at 1342.040 kb on + strand, within ABIE40_RS06835at 1342.040 kb on + strand, within ABIE40_RS06835at 1342.040 kb on + strand, within ABIE40_RS06835at 1342.040 kb on + strand, within ABIE40_RS06835at 1342.040 kb on + strand, within ABIE40_RS06835at 1342.041 kb on - strand, within ABIE40_RS06835at 1342.041 kb on - strand, within ABIE40_RS06835at 1342.041 kb on - strand, within ABIE40_RS06835at 1342.041 kb on - strand, within ABIE40_RS06835at 1342.041 kb on - strand, within ABIE40_RS06835at 1342.041 kb on - strand, within ABIE40_RS06835at 1342.041 kb on - strand, within ABIE40_RS06835at 1342.041 kb on - strand, within ABIE40_RS06835at 1342.041 kb on - strand, within ABIE40_RS06835at 1342.041 kb on - strand, within ABIE40_RS06835at 1342.041 kb on - strand, within ABIE40_RS06835at 1342.041 kb on - strand, within ABIE40_RS06835at 1342.041 kb on - strand, within ABIE40_RS06835at 1342.108 kb on + strand, within ABIE40_RS06835at 1342.108 kb on + strand, within ABIE40_RS06835at 1342.108 kb on + strand, within ABIE40_RS06835at 1342.109 kb on - strand, within ABIE40_RS06835at 1342.109 kb on - strand, within ABIE40_RS06835at 1342.109 kb on - strand, within ABIE40_RS06835at 1342.109 kb on - strand, within ABIE40_RS06835at 1342.109 kb on - strand, within ABIE40_RS06835at 1342.109 kb on - strand, within ABIE40_RS06835at 1342.110 kb on + strand, within ABIE40_RS06835at 1342.110 kb on + strand, within ABIE40_RS06835at 1342.110 kb on + strand, within ABIE40_RS06835at 1342.110 kb on + strand, within ABIE40_RS06835at 1342.110 kb on + strand, within ABIE40_RS06835at 1342.111 kb on - strand, within ABIE40_RS06835at 1342.111 kb on - strand, within ABIE40_RS06835at 1342.111 kb on - strand, within ABIE40_RS06835at 1342.111 kb on - strand, within ABIE40_RS06835at 1342.111 kb on - strand, within ABIE40_RS06835at 1342.114 kb on + strand, within ABIE40_RS06835at 1342.114 kb on + strand, within ABIE40_RS06835at 1342.114 kb on + strand, within ABIE40_RS06835at 1342.114 kb on + strand, within ABIE40_RS06835at 1342.114 kb on + strand, within ABIE40_RS06835at 1342.114 kb on + strand, within ABIE40_RS06835at 1342.114 kb on + strand, within ABIE40_RS06835at 1342.115 kb on - strand, within ABIE40_RS06835at 1342.115 kb on - strand, within ABIE40_RS06835at 1342.115 kb on - strand, within ABIE40_RS06835at 1342.115 kb on - strand, within ABIE40_RS06835at 1342.115 kb on - strand, within ABIE40_RS06835at 1342.115 kb on - strand, within ABIE40_RS06835at 1342.115 kb on - strand, within ABIE40_RS06835at 1342.115 kb on - strand, within ABIE40_RS06835at 1342.115 kb on - strand, within ABIE40_RS06835at 1342.115 kb on - strand, within ABIE40_RS06835at 1342.115 kb on - strand, within ABIE40_RS06835at 1342.115 kb on - strand, within ABIE40_RS06835at 1342.115 kb on - strand, within ABIE40_RS06835at 1342.115 kb on - strand, within ABIE40_RS06835at 1342.115 kb on - strand, within ABIE40_RS06835at 1342.115 kb on - strand, within ABIE40_RS06835at 1342.115 kb on - strand, within ABIE40_RS06835at 1342.117 kb on - strand, within ABIE40_RS06835at 1342.187 kb on - strand, within ABIE40_RS06835

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 10.6206 mM
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1,339,410 + ABIE40_RS06825 0.68 -1.5
1,339,411 - ABIE40_RS06825 0.68 -2.0
1,339,416 + ABIE40_RS06825 0.69 +1.1
1,339,416 + ABIE40_RS06825 0.69 +0.5
1,339,417 - ABIE40_RS06825 0.69 -2.4
1,339,793 + ABIE40_RS06825 0.83 +0.6
1,339,794 - ABIE40_RS06825 0.83 +0.1
1,339,987 + +0.4
1,340,007 + +2.1
1,340,007 + +0.8
1,340,007 + +2.5
1,340,007 + +1.3
1,340,007 + +1.1
1,340,007 + -1.9
1,340,007 + +0.8
1,340,008 - +1.0
1,340,008 - -2.5
1,340,092 - +0.5
1,340,092 - -1.5
1,340,136 + -1.1
1,340,136 + -1.8
1,340,136 + +0.5
1,340,136 + +2.1
1,340,136 + -0.6
1,340,137 - +2.0
1,340,137 - -0.7
1,340,137 - +1.0
1,340,137 - +0.4
1,340,137 - +1.5
1,340,380 + ABIE40_RS06830 0.16 -1.7
1,340,381 - ABIE40_RS06830 0.16 -1.0
1,340,381 - ABIE40_RS06830 0.16 -3.3
1,340,381 - ABIE40_RS06830 0.16 -1.7
1,340,406 - ABIE40_RS06830 0.18 +2.3
1,340,423 + ABIE40_RS06830 0.20 +0.6
1,340,423 + ABIE40_RS06830 0.20 -0.6
1,340,424 - ABIE40_RS06830 0.20 +0.2
1,340,462 + ABIE40_RS06830 0.23 -1.1
1,340,585 + ABIE40_RS06830 0.35 -1.6
1,340,627 + ABIE40_RS06830 0.39 -1.2
1,340,627 + ABIE40_RS06830 0.39 -0.5
1,340,627 + ABIE40_RS06830 0.39 -1.4
1,340,627 + ABIE40_RS06830 0.39 -0.4
1,340,627 + ABIE40_RS06830 0.39 -1.0
1,340,627 + ABIE40_RS06830 0.39 -0.8
1,340,627 + ABIE40_RS06830 0.39 -0.8
1,340,628 - ABIE40_RS06830 0.39 -1.8
1,340,628 - ABIE40_RS06830 0.39 -3.1
1,340,628 - ABIE40_RS06830 0.39 -1.0
1,340,628 - ABIE40_RS06830 0.39 +1.0
1,340,628 - ABIE40_RS06830 0.39 -1.6
1,340,628 - ABIE40_RS06830 0.39 -0.6
1,340,629 + ABIE40_RS06830 0.39 -0.3
1,340,629 + ABIE40_RS06830 0.39 +1.0
1,340,629 + ABIE40_RS06830 0.39 -1.3
1,340,629 + ABIE40_RS06830 0.39 -2.5
1,340,630 - ABIE40_RS06830 0.40 +0.6
1,340,630 - ABIE40_RS06830 0.40 -1.5
1,340,630 - ABIE40_RS06830 0.40 -2.8
1,340,631 + ABIE40_RS06830 0.40 -0.2
1,340,631 + ABIE40_RS06830 0.40 +0.2
1,340,631 + ABIE40_RS06830 0.40 -2.8
1,340,631 + ABIE40_RS06830 0.40 +0.7
1,340,632 - ABIE40_RS06830 0.40 -0.3
1,340,632 - ABIE40_RS06830 0.40 -0.6
1,340,632 - ABIE40_RS06830 0.40 -1.7
1,340,632 - ABIE40_RS06830 0.40 +1.1
1,340,662 - ABIE40_RS06830 0.43 -0.6
1,340,768 + ABIE40_RS06830 0.53 -3.0
1,340,768 + ABIE40_RS06830 0.53 -3.1
1,340,768 + ABIE40_RS06830 0.53 -0.6
1,340,768 + ABIE40_RS06830 0.53 -3.8
1,340,768 + ABIE40_RS06830 0.53 -2.3
1,340,769 - ABIE40_RS06830 0.53 -0.1
1,340,769 - ABIE40_RS06830 0.53 -0.1
1,340,777 + ABIE40_RS06830 0.54 +0.7
1,340,778 - ABIE40_RS06830 0.54 -2.5
1,340,778 - ABIE40_RS06830 0.54 -1.5
1,340,778 - ABIE40_RS06830 0.54 -2.1
1,340,954 + ABIE40_RS06830 0.70 -1.5
1,340,954 + ABIE40_RS06830 0.70 -3.1
1,340,955 - ABIE40_RS06830 0.71 +0.8
1,340,955 - ABIE40_RS06830 0.71 -1.9
1,340,955 - ABIE40_RS06830 0.71 -1.7
1,340,956 + ABIE40_RS06830 0.71 -2.5
1,340,957 - ABIE40_RS06830 0.71 +1.0
1,340,957 - ABIE40_RS06830 0.71 -0.5
1,340,957 - ABIE40_RS06830 0.71 -1.7
1,340,957 - ABIE40_RS06830 0.71 -3.1
1,340,979 - ABIE40_RS06830 0.73 +1.7
1,340,979 - ABIE40_RS06830 0.73 -1.3
1,341,079 + ABIE40_RS06830 0.82 -2.1
1,341,151 + ABIE40_RS06830 0.89 +2.2
1,341,194 + -0.8
1,341,194 + -1.4
1,341,194 + +0.2
1,341,194 + -1.0
1,341,194 + -2.7
1,341,197 + -1.4
1,341,197 + -1.7
1,341,688 + ABIE40_RS06835 0.18 -2.5
1,341,688 + ABIE40_RS06835 0.18 +0.8
1,341,751 + ABIE40_RS06835 0.20 -1.1
1,341,752 - ABIE40_RS06835 0.20 -1.8
1,341,752 - ABIE40_RS06835 0.20 +0.4
1,341,832 + ABIE40_RS06835 0.24 +0.2
1,341,832 + ABIE40_RS06835 0.24 +1.4
1,341,832 + ABIE40_RS06835 0.24 +1.0
1,341,982 + ABIE40_RS06835 0.30 -1.0
1,341,983 - ABIE40_RS06835 0.30 +1.4
1,342,038 + ABIE40_RS06835 0.32 -1.2
1,342,038 + ABIE40_RS06835 0.32 +0.0
1,342,040 + ABIE40_RS06835 0.32 +0.5
1,342,040 + ABIE40_RS06835 0.32 +1.2
1,342,040 + ABIE40_RS06835 0.32 +1.3
1,342,040 + ABIE40_RS06835 0.32 +0.6
1,342,040 + ABIE40_RS06835 0.32 -1.8
1,342,040 + ABIE40_RS06835 0.32 +1.2
1,342,040 + ABIE40_RS06835 0.32 -0.4
1,342,040 + ABIE40_RS06835 0.32 +0.5
1,342,041 - ABIE40_RS06835 0.32 +1.0
1,342,041 - ABIE40_RS06835 0.32 +2.9
1,342,041 - ABIE40_RS06835 0.32 -0.6
1,342,041 - ABIE40_RS06835 0.32 +0.8
1,342,041 - ABIE40_RS06835 0.32 +0.8
1,342,041 - ABIE40_RS06835 0.32 +0.5
1,342,041 - ABIE40_RS06835 0.32 -0.2
1,342,041 - ABIE40_RS06835 0.32 +1.2
1,342,041 - ABIE40_RS06835 0.32 +0.9
1,342,041 - ABIE40_RS06835 0.32 +0.4
1,342,041 - ABIE40_RS06835 0.32 +1.8
1,342,041 - ABIE40_RS06835 0.32 +0.7
1,342,041 - ABIE40_RS06835 0.32 +1.8
1,342,108 + ABIE40_RS06835 0.35 +2.2
1,342,108 + ABIE40_RS06835 0.35 +0.9
1,342,108 + ABIE40_RS06835 0.35 +2.0
1,342,109 - ABIE40_RS06835 0.35 +0.8
1,342,109 - ABIE40_RS06835 0.35 +0.8
1,342,109 - ABIE40_RS06835 0.35 +0.4
1,342,109 - ABIE40_RS06835 0.35 +1.3
1,342,109 - ABIE40_RS06835 0.35 -0.6
1,342,109 - ABIE40_RS06835 0.35 -0.2
1,342,110 + ABIE40_RS06835 0.35 -1.7
1,342,110 + ABIE40_RS06835 0.35 -2.2
1,342,110 + ABIE40_RS06835 0.35 -1.7
1,342,110 + ABIE40_RS06835 0.35 -2.0
1,342,110 + ABIE40_RS06835 0.35 -2.3
1,342,111 - ABIE40_RS06835 0.35 +0.9
1,342,111 - ABIE40_RS06835 0.35 +2.0
1,342,111 - ABIE40_RS06835 0.35 -1.5
1,342,111 - ABIE40_RS06835 0.35 -0.6
1,342,111 - ABIE40_RS06835 0.35 +1.8
1,342,114 + ABIE40_RS06835 0.35 -2.5
1,342,114 + ABIE40_RS06835 0.35 +0.4
1,342,114 + ABIE40_RS06835 0.35 +1.8
1,342,114 + ABIE40_RS06835 0.35 +1.7
1,342,114 + ABIE40_RS06835 0.35 -0.8
1,342,114 + ABIE40_RS06835 0.35 -1.2
1,342,114 + ABIE40_RS06835 0.35 +0.8
1,342,115 - ABIE40_RS06835 0.35 +1.4
1,342,115 - ABIE40_RS06835 0.35 -0.8
1,342,115 - ABIE40_RS06835 0.35 +0.1
1,342,115 - ABIE40_RS06835 0.35 +1.0
1,342,115 - ABIE40_RS06835 0.35 +0.9
1,342,115 - ABIE40_RS06835 0.35 +1.4
1,342,115 - ABIE40_RS06835 0.35 -3.7
1,342,115 - ABIE40_RS06835 0.35 +1.8
1,342,115 - ABIE40_RS06835 0.35 -0.2
1,342,115 - ABIE40_RS06835 0.35 +1.6
1,342,115 - ABIE40_RS06835 0.35 +2.9
1,342,115 - ABIE40_RS06835 0.35 +3.0
1,342,115 - ABIE40_RS06835 0.35 +0.1
1,342,115 - ABIE40_RS06835 0.35 +2.4
1,342,115 - ABIE40_RS06835 0.35 -1.8
1,342,115 - ABIE40_RS06835 0.35 +1.3
1,342,115 - ABIE40_RS06835 0.35 +1.9
1,342,117 - ABIE40_RS06835 0.35 +1.2
1,342,187 - ABIE40_RS06835 0.38 +1.5

Or see this region's nucleotide sequence