Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS06800

Experiment: R2A with 3-octanone 10.6206 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS06790 and ABIE40_RS06795 are separated by 110 nucleotidesABIE40_RS06795 and ABIE40_RS06800 are separated by 81 nucleotidesABIE40_RS06800 and ABIE40_RS06805 are separated by 67 nucleotidesABIE40_RS06805 and ABIE40_RS06810 are separated by 78 nucleotidesABIE40_RS06810 and ABIE40_RS06815 are separated by 360 nucleotides ABIE40_RS06790: ABIE40_RS06790 - integration host factor subunit alpha, at 1,330,638 to 1,330,976 _RS06790 ABIE40_RS06795: ABIE40_RS06795 - MerR family transcriptional regulator, at 1,331,087 to 1,331,680 _RS06795 ABIE40_RS06800: ABIE40_RS06800 - FAD-dependent oxidoreductase, at 1,331,762 to 1,333,420 _RS06800 ABIE40_RS06805: ABIE40_RS06805 - DUF1236 domain-containing protein, at 1,333,488 to 1,333,805 _RS06805 ABIE40_RS06810: ABIE40_RS06810 - hypothetical protein, at 1,333,884 to 1,334,051 _RS06810 ABIE40_RS06815: ABIE40_RS06815 - cellulose biosynthesis protein BcsN, at 1,334,412 to 1,335,413 _RS06815 Position (kb) 1331 1332 1333 1334Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1330.999 kb on - strandat 1331.005 kb on + strandat 1331.083 kb on + strandat 1331.273 kb on + strand, within ABIE40_RS06795at 1331.673 kb on + strandat 1331.674 kb on - strandat 1331.721 kb on + strandat 1331.725 kb on + strandat 1331.725 kb on + strandat 1331.725 kb on + strandat 1331.725 kb on + strandat 1331.726 kb on - strandat 1331.726 kb on - strandat 1331.726 kb on - strandat 1331.735 kb on + strandat 1331.767 kb on + strandat 1331.767 kb on + strandat 1331.768 kb on - strandat 1331.768 kb on - strandat 1331.768 kb on - strandat 1331.768 kb on - strandat 1331.769 kb on + strandat 1331.770 kb on - strandat 1331.770 kb on - strandat 1331.770 kb on - strandat 1331.805 kb on + strandat 1331.805 kb on + strandat 1331.805 kb on + strandat 1331.805 kb on + strandat 1331.805 kb on + strandat 1331.805 kb on + strandat 1331.806 kb on - strandat 1331.806 kb on - strandat 1331.806 kb on - strandat 1331.806 kb on - strandat 1331.806 kb on - strandat 1331.806 kb on - strandat 1331.806 kb on - strandat 1331.806 kb on - strandat 1331.806 kb on - strandat 1331.806 kb on - strandat 1331.806 kb on - strandat 1331.806 kb on - strandat 1331.806 kb on - strandat 1332.107 kb on + strand, within ABIE40_RS06800at 1332.107 kb on + strand, within ABIE40_RS06800at 1332.107 kb on + strand, within ABIE40_RS06800at 1332.107 kb on + strand, within ABIE40_RS06800at 1332.107 kb on + strand, within ABIE40_RS06800at 1332.107 kb on + strand, within ABIE40_RS06800at 1332.108 kb on - strand, within ABIE40_RS06800at 1332.108 kb on - strand, within ABIE40_RS06800at 1332.108 kb on - strand, within ABIE40_RS06800at 1332.108 kb on - strand, within ABIE40_RS06800at 1332.108 kb on - strand, within ABIE40_RS06800at 1332.108 kb on - strand, within ABIE40_RS06800at 1332.108 kb on - strand, within ABIE40_RS06800at 1332.108 kb on - strand, within ABIE40_RS06800at 1332.108 kb on - strand, within ABIE40_RS06800at 1332.108 kb on - strand, within ABIE40_RS06800at 1332.108 kb on - strand, within ABIE40_RS06800at 1332.108 kb on - strand, within ABIE40_RS06800at 1332.237 kb on - strand, within ABIE40_RS06800at 1332.322 kb on + strand, within ABIE40_RS06800at 1332.323 kb on - strand, within ABIE40_RS06800at 1332.323 kb on - strand, within ABIE40_RS06800at 1332.323 kb on - strand, within ABIE40_RS06800at 1332.380 kb on + strand, within ABIE40_RS06800at 1332.485 kb on + strand, within ABIE40_RS06800at 1332.485 kb on + strand, within ABIE40_RS06800at 1332.485 kb on + strand, within ABIE40_RS06800at 1332.647 kb on + strand, within ABIE40_RS06800at 1332.647 kb on + strand, within ABIE40_RS06800at 1332.648 kb on - strand, within ABIE40_RS06800at 1332.710 kb on + strand, within ABIE40_RS06800at 1332.710 kb on + strand, within ABIE40_RS06800at 1332.710 kb on + strand, within ABIE40_RS06800at 1332.711 kb on - strand, within ABIE40_RS06800at 1332.738 kb on - strand, within ABIE40_RS06800at 1332.769 kb on + strand, within ABIE40_RS06800at 1332.769 kb on + strand, within ABIE40_RS06800at 1332.769 kb on + strand, within ABIE40_RS06800at 1332.769 kb on + strand, within ABIE40_RS06800at 1332.769 kb on + strand, within ABIE40_RS06800at 1332.770 kb on - strand, within ABIE40_RS06800at 1332.770 kb on - strand, within ABIE40_RS06800at 1332.770 kb on - strand, within ABIE40_RS06800at 1332.794 kb on + strand, within ABIE40_RS06800at 1332.795 kb on - strand, within ABIE40_RS06800at 1332.858 kb on + strand, within ABIE40_RS06800at 1332.859 kb on - strand, within ABIE40_RS06800at 1332.923 kb on + strand, within ABIE40_RS06800at 1332.923 kb on + strand, within ABIE40_RS06800at 1332.935 kb on + strand, within ABIE40_RS06800at 1332.936 kb on - strand, within ABIE40_RS06800at 1333.017 kb on + strand, within ABIE40_RS06800at 1333.018 kb on - strand, within ABIE40_RS06800at 1333.115 kb on + strand, within ABIE40_RS06800at 1333.115 kb on + strand, within ABIE40_RS06800at 1333.116 kb on - strand, within ABIE40_RS06800at 1333.116 kb on - strand, within ABIE40_RS06800at 1333.116 kb on - strand, within ABIE40_RS06800at 1333.116 kb on - strand, within ABIE40_RS06800at 1333.116 kb on - strand, within ABIE40_RS06800at 1333.262 kb on + strandat 1333.263 kb on - strandat 1333.263 kb on - strandat 1333.556 kb on + strand, within ABIE40_RS06805at 1333.557 kb on - strand, within ABIE40_RS06805at 1333.557 kb on - strand, within ABIE40_RS06805at 1333.557 kb on - strand, within ABIE40_RS06805at 1333.557 kb on - strand, within ABIE40_RS06805at 1333.558 kb on + strand, within ABIE40_RS06805at 1333.558 kb on + strand, within ABIE40_RS06805at 1333.558 kb on + strand, within ABIE40_RS06805at 1333.558 kb on + strand, within ABIE40_RS06805at 1333.558 kb on + strand, within ABIE40_RS06805at 1333.558 kb on + strand, within ABIE40_RS06805at 1333.558 kb on + strand, within ABIE40_RS06805at 1333.559 kb on - strand, within ABIE40_RS06805at 1333.559 kb on - strand, within ABIE40_RS06805at 1333.559 kb on - strand, within ABIE40_RS06805at 1333.559 kb on - strand, within ABIE40_RS06805at 1333.559 kb on - strand, within ABIE40_RS06805at 1333.559 kb on - strand, within ABIE40_RS06805at 1333.559 kb on - strand, within ABIE40_RS06805at 1333.564 kb on + strand, within ABIE40_RS06805at 1333.564 kb on + strand, within ABIE40_RS06805at 1333.564 kb on + strand, within ABIE40_RS06805at 1333.565 kb on - strand, within ABIE40_RS06805at 1333.565 kb on - strand, within ABIE40_RS06805at 1333.565 kb on - strand, within ABIE40_RS06805at 1333.565 kb on - strand, within ABIE40_RS06805at 1333.565 kb on - strand, within ABIE40_RS06805at 1333.575 kb on - strand, within ABIE40_RS06805at 1333.575 kb on - strand, within ABIE40_RS06805at 1333.586 kb on + strand, within ABIE40_RS06805at 1333.639 kb on + strand, within ABIE40_RS06805at 1333.639 kb on + strand, within ABIE40_RS06805at 1333.639 kb on + strand, within ABIE40_RS06805at 1333.639 kb on + strand, within ABIE40_RS06805at 1333.640 kb on - strand, within ABIE40_RS06805at 1333.640 kb on - strand, within ABIE40_RS06805at 1333.640 kb on - strand, within ABIE40_RS06805at 1333.640 kb on - strand, within ABIE40_RS06805at 1333.644 kb on + strand, within ABIE40_RS06805at 1333.645 kb on - strand, within ABIE40_RS06805at 1333.672 kb on + strand, within ABIE40_RS06805at 1333.672 kb on + strand, within ABIE40_RS06805at 1333.672 kb on + strand, within ABIE40_RS06805at 1333.673 kb on - strand, within ABIE40_RS06805at 1333.673 kb on - strand, within ABIE40_RS06805at 1333.673 kb on - strand, within ABIE40_RS06805at 1333.673 kb on - strand, within ABIE40_RS06805at 1333.673 kb on - strand, within ABIE40_RS06805at 1333.673 kb on - strand, within ABIE40_RS06805at 1333.673 kb on - strand, within ABIE40_RS06805at 1333.673 kb on - strand, within ABIE40_RS06805at 1333.925 kb on + strand, within ABIE40_RS06810at 1333.926 kb on - strand, within ABIE40_RS06810at 1333.926 kb on - strand, within ABIE40_RS06810at 1333.926 kb on - strand, within ABIE40_RS06810at 1333.930 kb on + strand, within ABIE40_RS06810at 1333.930 kb on + strand, within ABIE40_RS06810at 1333.931 kb on - strand, within ABIE40_RS06810at 1333.952 kb on - strand, within ABIE40_RS06810at 1333.952 kb on - strand, within ABIE40_RS06810at 1334.080 kb on + strandat 1334.133 kb on + strandat 1334.227 kb on + strandat 1334.227 kb on + strandat 1334.288 kb on + strandat 1334.289 kb on - strandat 1334.302 kb on + strandat 1334.302 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 10.6206 mM
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1,330,999 - +0.1
1,331,005 + +0.4
1,331,083 + -1.0
1,331,273 + ABIE40_RS06795 0.31 -0.8
1,331,673 + +0.8
1,331,674 - +1.2
1,331,721 + -0.2
1,331,725 + +2.7
1,331,725 + -0.7
1,331,725 + -0.8
1,331,725 + -1.5
1,331,726 - -3.4
1,331,726 - +1.2
1,331,726 - +2.2
1,331,735 + +1.2
1,331,767 + -0.1
1,331,767 + +0.5
1,331,768 - -0.4
1,331,768 - -2.3
1,331,768 - -0.6
1,331,768 - +2.6
1,331,769 + +0.0
1,331,770 - -0.2
1,331,770 - +0.4
1,331,770 - -3.2
1,331,805 + +0.9
1,331,805 + +1.0
1,331,805 + +0.6
1,331,805 + +0.4
1,331,805 + -2.6
1,331,805 + -0.5
1,331,806 - -1.9
1,331,806 - -1.1
1,331,806 - +0.9
1,331,806 - +1.9
1,331,806 - +1.4
1,331,806 - +0.1
1,331,806 - -0.6
1,331,806 - -1.5
1,331,806 - -2.8
1,331,806 - +1.7
1,331,806 - +0.5
1,331,806 - -0.6
1,331,806 - +0.2
1,332,107 + ABIE40_RS06800 0.21 +1.8
1,332,107 + ABIE40_RS06800 0.21 +0.3
1,332,107 + ABIE40_RS06800 0.21 -2.8
1,332,107 + ABIE40_RS06800 0.21 +0.7
1,332,107 + ABIE40_RS06800 0.21 -2.7
1,332,107 + ABIE40_RS06800 0.21 -1.8
1,332,108 - ABIE40_RS06800 0.21 +0.5
1,332,108 - ABIE40_RS06800 0.21 -0.1
1,332,108 - ABIE40_RS06800 0.21 -1.7
1,332,108 - ABIE40_RS06800 0.21 -2.3
1,332,108 - ABIE40_RS06800 0.21 -0.8
1,332,108 - ABIE40_RS06800 0.21 +0.6
1,332,108 - ABIE40_RS06800 0.21 +0.3
1,332,108 - ABIE40_RS06800 0.21 -0.2
1,332,108 - ABIE40_RS06800 0.21 -0.7
1,332,108 - ABIE40_RS06800 0.21 +0.4
1,332,108 - ABIE40_RS06800 0.21 +0.6
1,332,108 - ABIE40_RS06800 0.21 -1.7
1,332,237 - ABIE40_RS06800 0.29 +1.4
1,332,322 + ABIE40_RS06800 0.34 +0.3
1,332,323 - ABIE40_RS06800 0.34 +0.5
1,332,323 - ABIE40_RS06800 0.34 -0.0
1,332,323 - ABIE40_RS06800 0.34 +0.5
1,332,380 + ABIE40_RS06800 0.37 +0.9
1,332,485 + ABIE40_RS06800 0.44 +0.5
1,332,485 + ABIE40_RS06800 0.44 -2.2
1,332,485 + ABIE40_RS06800 0.44 +1.0
1,332,647 + ABIE40_RS06800 0.53 -0.4
1,332,647 + ABIE40_RS06800 0.53 +0.3
1,332,648 - ABIE40_RS06800 0.53 +1.4
1,332,710 + ABIE40_RS06800 0.57 -1.2
1,332,710 + ABIE40_RS06800 0.57 +0.2
1,332,710 + ABIE40_RS06800 0.57 -3.1
1,332,711 - ABIE40_RS06800 0.57 -2.8
1,332,738 - ABIE40_RS06800 0.59 -1.3
1,332,769 + ABIE40_RS06800 0.61 +0.7
1,332,769 + ABIE40_RS06800 0.61 +0.8
1,332,769 + ABIE40_RS06800 0.61 -0.1
1,332,769 + ABIE40_RS06800 0.61 -2.9
1,332,769 + ABIE40_RS06800 0.61 -1.0
1,332,770 - ABIE40_RS06800 0.61 +1.4
1,332,770 - ABIE40_RS06800 0.61 +2.4
1,332,770 - ABIE40_RS06800 0.61 -1.9
1,332,794 + ABIE40_RS06800 0.62 -0.6
1,332,795 - ABIE40_RS06800 0.62 +1.0
1,332,858 + ABIE40_RS06800 0.66 +0.7
1,332,859 - ABIE40_RS06800 0.66 +1.6
1,332,923 + ABIE40_RS06800 0.70 +0.6
1,332,923 + ABIE40_RS06800 0.70 +0.2
1,332,935 + ABIE40_RS06800 0.71 +0.4
1,332,936 - ABIE40_RS06800 0.71 -0.4
1,333,017 + ABIE40_RS06800 0.76 +1.1
1,333,018 - ABIE40_RS06800 0.76 -0.4
1,333,115 + ABIE40_RS06800 0.82 +0.2
1,333,115 + ABIE40_RS06800 0.82 +0.7
1,333,116 - ABIE40_RS06800 0.82 +0.7
1,333,116 - ABIE40_RS06800 0.82 -3.5
1,333,116 - ABIE40_RS06800 0.82 -0.7
1,333,116 - ABIE40_RS06800 0.82 -0.8
1,333,116 - ABIE40_RS06800 0.82 -0.1
1,333,262 + +0.2
1,333,263 - +0.2
1,333,263 - +0.9
1,333,556 + ABIE40_RS06805 0.21 -0.9
1,333,557 - ABIE40_RS06805 0.22 -0.5
1,333,557 - ABIE40_RS06805 0.22 +0.5
1,333,557 - ABIE40_RS06805 0.22 -0.9
1,333,557 - ABIE40_RS06805 0.22 +0.7
1,333,558 + ABIE40_RS06805 0.22 -0.3
1,333,558 + ABIE40_RS06805 0.22 -0.5
1,333,558 + ABIE40_RS06805 0.22 -1.3
1,333,558 + ABIE40_RS06805 0.22 -1.5
1,333,558 + ABIE40_RS06805 0.22 +0.8
1,333,558 + ABIE40_RS06805 0.22 -2.5
1,333,558 + ABIE40_RS06805 0.22 +0.8
1,333,559 - ABIE40_RS06805 0.22 +0.7
1,333,559 - ABIE40_RS06805 0.22 -0.9
1,333,559 - ABIE40_RS06805 0.22 +0.6
1,333,559 - ABIE40_RS06805 0.22 +2.0
1,333,559 - ABIE40_RS06805 0.22 +0.8
1,333,559 - ABIE40_RS06805 0.22 +1.3
1,333,559 - ABIE40_RS06805 0.22 +0.6
1,333,564 + ABIE40_RS06805 0.24 +0.7
1,333,564 + ABIE40_RS06805 0.24 -3.3
1,333,564 + ABIE40_RS06805 0.24 -3.4
1,333,565 - ABIE40_RS06805 0.24 +1.0
1,333,565 - ABIE40_RS06805 0.24 +1.4
1,333,565 - ABIE40_RS06805 0.24 +1.1
1,333,565 - ABIE40_RS06805 0.24 +0.4
1,333,565 - ABIE40_RS06805 0.24 +0.3
1,333,575 - ABIE40_RS06805 0.27 +0.2
1,333,575 - ABIE40_RS06805 0.27 +1.2
1,333,586 + ABIE40_RS06805 0.31 +2.3
1,333,639 + ABIE40_RS06805 0.47 +2.8
1,333,639 + ABIE40_RS06805 0.47 +1.3
1,333,639 + ABIE40_RS06805 0.47 -3.3
1,333,639 + ABIE40_RS06805 0.47 +0.8
1,333,640 - ABIE40_RS06805 0.48 +0.2
1,333,640 - ABIE40_RS06805 0.48 +4.0
1,333,640 - ABIE40_RS06805 0.48 -0.5
1,333,640 - ABIE40_RS06805 0.48 -0.6
1,333,644 + ABIE40_RS06805 0.49 -0.1
1,333,645 - ABIE40_RS06805 0.49 +0.8
1,333,672 + ABIE40_RS06805 0.58 -0.6
1,333,672 + ABIE40_RS06805 0.58 +2.6
1,333,672 + ABIE40_RS06805 0.58 -0.3
1,333,673 - ABIE40_RS06805 0.58 -0.9
1,333,673 - ABIE40_RS06805 0.58 +1.3
1,333,673 - ABIE40_RS06805 0.58 -0.6
1,333,673 - ABIE40_RS06805 0.58 -0.4
1,333,673 - ABIE40_RS06805 0.58 +1.3
1,333,673 - ABIE40_RS06805 0.58 +0.4
1,333,673 - ABIE40_RS06805 0.58 +0.4
1,333,673 - ABIE40_RS06805 0.58 -0.6
1,333,925 + ABIE40_RS06810 0.24 -3.4
1,333,926 - ABIE40_RS06810 0.25 +1.6
1,333,926 - ABIE40_RS06810 0.25 -0.3
1,333,926 - ABIE40_RS06810 0.25 +2.3
1,333,930 + ABIE40_RS06810 0.27 -1.1
1,333,930 + ABIE40_RS06810 0.27 +0.0
1,333,931 - ABIE40_RS06810 0.28 -1.5
1,333,952 - ABIE40_RS06810 0.40 -0.4
1,333,952 - ABIE40_RS06810 0.40 +1.5
1,334,080 + +1.8
1,334,133 + -2.2
1,334,227 + +0.5
1,334,227 + +2.4
1,334,288 + +0.0
1,334,289 - +1.8
1,334,302 + +0.3
1,334,302 + -0.5

Or see this region's nucleotide sequence