Experiment: R2A with 3-octanone 5.3129 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS30880 and ABIE40_RS30885 are separated by 223 nucleotides ABIE40_RS30885 and ABIE40_RS30890 are separated by 125 nucleotides ABIE40_RS30890 and ABIE40_RS30895 are separated by 410 nucleotides ABIE40_RS30895 and ABIE40_RS30900 overlap by 4 nucleotides
ABIE40_RS30880: ABIE40_RS30880 - hypothetical protein, at 870,294 to 870,707
_RS30880
ABIE40_RS30885: ABIE40_RS30885 - DUF982 domain-containing protein, at 870,931 to 871,311
_RS30885
ABIE40_RS30890: ABIE40_RS30890 - hypothetical protein, at 871,437 to 871,724
_RS30890
ABIE40_RS30895: ABIE40_RS30895 - cytochrome o ubiquinol oxidase subunit IV, at 872,135 to 872,542
_RS30895
ABIE40_RS30900: ABIE40_RS30900 - cytochrome c oxidase subunit 3, at 872,539 to 873,234
_RS30900
Position (kb) 871
872 Strain fitness (log2 ratio) -1
0
1
2
3 at 870.438 kb on + strand, within ABIE40_RS30880 at 870.438 kb on + strand, within ABIE40_RS30880 at 870.439 kb on - strand, within ABIE40_RS30880 at 870.439 kb on - strand, within ABIE40_RS30880 at 870.439 kb on - strand, within ABIE40_RS30880 at 870.439 kb on - strand, within ABIE40_RS30880 at 870.741 kb on - strand at 870.741 kb on - strand at 870.741 kb on - strand at 870.744 kb on - strand at 870.853 kb on - strand at 870.854 kb on + strand at 871.062 kb on + strand, within ABIE40_RS30885 at 871.084 kb on - strand, within ABIE40_RS30885 at 871.233 kb on + strand, within ABIE40_RS30885 at 871.511 kb on + strand, within ABIE40_RS30890 at 871.512 kb on - strand, within ABIE40_RS30890 at 871.512 kb on - strand, within ABIE40_RS30890 at 871.578 kb on + strand, within ABIE40_RS30890 at 871.649 kb on + strand, within ABIE40_RS30890 at 871.650 kb on - strand, within ABIE40_RS30890 at 871.656 kb on + strand, within ABIE40_RS30890 at 871.760 kb on + strand at 871.763 kb on + strand at 871.780 kb on + strand at 871.781 kb on - strand at 871.781 kb on - strand at 871.927 kb on - strand at 871.974 kb on + strand at 872.037 kb on - strand at 872.136 kb on + strand at 872.136 kb on + strand at 872.137 kb on - strand at 872.171 kb on - strand at 872.340 kb on - strand, within ABIE40_RS30895 at 872.376 kb on - strand, within ABIE40_RS30895 at 872.376 kb on - strand, within ABIE40_RS30895 at 872.451 kb on + strand, within ABIE40_RS30895 at 872.562 kb on - strand at 872.592 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.3129 mM remove 870,438 + ABIE40_RS30880 0.35 +2.8 870,438 + ABIE40_RS30880 0.35 -1.2 870,439 - ABIE40_RS30880 0.35 +0.4 870,439 - ABIE40_RS30880 0.35 +0.3 870,439 - ABIE40_RS30880 0.35 +0.4 870,439 - ABIE40_RS30880 0.35 +0.8 870,741 - +1.4 870,741 - -0.6 870,741 - +0.1 870,744 - +1.4 870,853 - +1.2 870,854 + -0.6 871,062 + ABIE40_RS30885 0.34 -1.2 871,084 - ABIE40_RS30885 0.40 +2.4 871,233 + ABIE40_RS30885 0.79 +2.8 871,511 + ABIE40_RS30890 0.26 +1.2 871,512 - ABIE40_RS30890 0.26 -1.6 871,512 - ABIE40_RS30890 0.26 +0.8 871,578 + ABIE40_RS30890 0.49 -1.7 871,649 + ABIE40_RS30890 0.74 +1.8 871,650 - ABIE40_RS30890 0.74 -1.5 871,656 + ABIE40_RS30890 0.76 +2.8 871,760 + +0.0 871,763 + +0.1 871,780 + +2.8 871,781 - +1.8 871,781 - +2.8 871,927 - +1.1 871,974 + +0.6 872,037 - +3.5 872,136 + +1.4 872,136 + -1.5 872,137 - -1.0 872,171 - +1.2 872,340 - ABIE40_RS30895 0.50 +2.8 872,376 - ABIE40_RS30895 0.59 +0.2 872,376 - ABIE40_RS30895 0.59 +0.8 872,451 + ABIE40_RS30895 0.77 +0.4 872,562 - -0.6 872,592 + -0.0
Or see this region's nucleotide sequence