Experiment: R2A with 3-octanone 5.3129 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS23040 and ABIE40_RS23045 are separated by 9 nucleotides ABIE40_RS23045 and ABIE40_RS23050 are separated by 234 nucleotides
ABIE40_RS23040: ABIE40_RS23040 - flagellar hook-associated family protein, at 756,828 to 757,874
_RS23040
ABIE40_RS23045: ABIE40_RS23045 - hypothetical protein, at 757,884 to 758,267
_RS23045
ABIE40_RS23050: ABIE40_RS23050 - DUF6502 family protein, at 758,502 to 759,356
_RS23050
Position (kb) 757
758
759 Strain fitness (log2 ratio) -2
-1
0
1
2 at 756.940 kb on - strand, within ABIE40_RS23040 at 756.940 kb on - strand, within ABIE40_RS23040 at 757.182 kb on - strand, within ABIE40_RS23040 at 757.182 kb on - strand, within ABIE40_RS23040 at 757.211 kb on + strand, within ABIE40_RS23040 at 757.211 kb on + strand, within ABIE40_RS23040 at 757.211 kb on + strand, within ABIE40_RS23040 at 757.212 kb on - strand, within ABIE40_RS23040 at 757.212 kb on - strand, within ABIE40_RS23040 at 757.212 kb on - strand, within ABIE40_RS23040 at 757.212 kb on - strand, within ABIE40_RS23040 at 757.320 kb on + strand, within ABIE40_RS23040 at 757.321 kb on - strand, within ABIE40_RS23040 at 757.321 kb on - strand, within ABIE40_RS23040 at 757.533 kb on + strand, within ABIE40_RS23040 at 757.534 kb on - strand, within ABIE40_RS23040 at 757.626 kb on + strand, within ABIE40_RS23040 at 757.626 kb on + strand, within ABIE40_RS23040 at 757.626 kb on + strand, within ABIE40_RS23040 at 757.627 kb on - strand, within ABIE40_RS23040 at 757.734 kb on + strand, within ABIE40_RS23040 at 757.735 kb on - strand, within ABIE40_RS23040 at 757.773 kb on + strand at 757.773 kb on + strand at 757.773 kb on + strand at 757.773 kb on + strand at 757.773 kb on + strand at 757.773 kb on + strand at 757.774 kb on - strand at 757.774 kb on - strand at 757.824 kb on + strand at 757.826 kb on + strand at 757.826 kb on + strand at 757.826 kb on + strand at 757.826 kb on + strand at 757.826 kb on + strand at 757.826 kb on + strand at 757.827 kb on - strand at 757.827 kb on - strand at 757.827 kb on - strand at 757.827 kb on - strand at 757.827 kb on - strand at 757.827 kb on - strand at 757.827 kb on - strand at 757.827 kb on - strand at 757.866 kb on + strand at 757.867 kb on - strand at 757.867 kb on - strand at 757.950 kb on + strand, within ABIE40_RS23045 at 757.950 kb on + strand, within ABIE40_RS23045 at 757.950 kb on + strand, within ABIE40_RS23045 at 757.951 kb on - strand, within ABIE40_RS23045 at 757.951 kb on - strand, within ABIE40_RS23045 at 757.951 kb on - strand, within ABIE40_RS23045 at 757.951 kb on - strand, within ABIE40_RS23045 at 757.951 kb on - strand, within ABIE40_RS23045 at 757.951 kb on - strand, within ABIE40_RS23045 at 757.951 kb on - strand, within ABIE40_RS23045 at 757.951 kb on - strand, within ABIE40_RS23045 at 757.951 kb on - strand, within ABIE40_RS23045 at 757.951 kb on - strand, within ABIE40_RS23045 at 757.951 kb on - strand, within ABIE40_RS23045 at 757.952 kb on + strand, within ABIE40_RS23045 at 757.952 kb on + strand, within ABIE40_RS23045 at 757.952 kb on + strand, within ABIE40_RS23045 at 757.952 kb on + strand, within ABIE40_RS23045 at 757.952 kb on + strand, within ABIE40_RS23045 at 757.952 kb on + strand, within ABIE40_RS23045 at 757.952 kb on + strand, within ABIE40_RS23045 at 757.953 kb on - strand, within ABIE40_RS23045 at 757.953 kb on - strand, within ABIE40_RS23045 at 757.953 kb on - strand, within ABIE40_RS23045 at 757.953 kb on - strand, within ABIE40_RS23045 at 757.953 kb on - strand, within ABIE40_RS23045 at 757.982 kb on + strand, within ABIE40_RS23045 at 757.982 kb on + strand, within ABIE40_RS23045 at 757.983 kb on - strand, within ABIE40_RS23045 at 757.983 kb on - strand, within ABIE40_RS23045 at 757.986 kb on - strand, within ABIE40_RS23045 at 758.007 kb on - strand, within ABIE40_RS23045 at 758.252 kb on + strand at 758.252 kb on + strand at 758.252 kb on + strand at 758.283 kb on + strand at 758.283 kb on + strand at 758.284 kb on - strand at 758.310 kb on - strand at 758.349 kb on + strand at 758.350 kb on - strand at 758.381 kb on + strand at 758.381 kb on + strand at 758.382 kb on - strand at 758.382 kb on - strand at 758.444 kb on - strand at 758.464 kb on + strand at 758.465 kb on - strand at 758.465 kb on - strand at 758.465 kb on - strand at 758.485 kb on + strand at 758.485 kb on + strand at 758.485 kb on + strand at 758.486 kb on - strand at 758.494 kb on + strand at 758.494 kb on + strand at 758.495 kb on - strand at 758.496 kb on + strand at 758.496 kb on + strand at 758.496 kb on + strand at 758.497 kb on - strand at 758.497 kb on - strand at 758.643 kb on + strand, within ABIE40_RS23050 at 758.643 kb on + strand, within ABIE40_RS23050 at 758.643 kb on + strand, within ABIE40_RS23050 at 758.644 kb on - strand, within ABIE40_RS23050 at 758.835 kb on + strand, within ABIE40_RS23050 at 758.835 kb on + strand, within ABIE40_RS23050 at 758.835 kb on + strand, within ABIE40_RS23050 at 758.980 kb on + strand, within ABIE40_RS23050 at 758.980 kb on + strand, within ABIE40_RS23050 at 759.057 kb on + strand, within ABIE40_RS23050 at 759.058 kb on - strand, within ABIE40_RS23050 at 759.058 kb on - strand, within ABIE40_RS23050 at 759.188 kb on + strand, within ABIE40_RS23050
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.3129 mM remove 756,940 - ABIE40_RS23040 0.11 -0.0 756,940 - ABIE40_RS23040 0.11 +0.3 757,182 - ABIE40_RS23040 0.34 -2.5 757,182 - ABIE40_RS23040 0.34 -0.4 757,211 + ABIE40_RS23040 0.37 +0.7 757,211 + ABIE40_RS23040 0.37 -0.2 757,211 + ABIE40_RS23040 0.37 -2.2 757,212 - ABIE40_RS23040 0.37 -0.3 757,212 - ABIE40_RS23040 0.37 -0.2 757,212 - ABIE40_RS23040 0.37 -0.4 757,212 - ABIE40_RS23040 0.37 -0.2 757,320 + ABIE40_RS23040 0.47 -1.0 757,321 - ABIE40_RS23040 0.47 -0.6 757,321 - ABIE40_RS23040 0.47 -1.1 757,533 + ABIE40_RS23040 0.67 +1.9 757,534 - ABIE40_RS23040 0.67 +0.5 757,626 + ABIE40_RS23040 0.76 -0.2 757,626 + ABIE40_RS23040 0.76 +1.0 757,626 + ABIE40_RS23040 0.76 -1.0 757,627 - ABIE40_RS23040 0.76 +0.2 757,734 + ABIE40_RS23040 0.87 +0.6 757,735 - ABIE40_RS23040 0.87 +0.5 757,773 + -1.8 757,773 + -1.3 757,773 + +0.4 757,773 + +0.1 757,773 + +0.0 757,773 + +0.4 757,774 - +0.3 757,774 - +0.5 757,824 + +0.2 757,826 + -0.7 757,826 + -0.9 757,826 + -0.5 757,826 + +0.6 757,826 + +0.3 757,826 + +0.7 757,827 - +0.7 757,827 - -0.0 757,827 - -1.8 757,827 - -0.3 757,827 - +0.5 757,827 - -1.0 757,827 - -0.9 757,827 - +0.2 757,866 + +0.2 757,867 - +0.6 757,867 - -0.1 757,950 + ABIE40_RS23045 0.17 +0.1 757,950 + ABIE40_RS23045 0.17 +0.8 757,950 + ABIE40_RS23045 0.17 +0.2 757,951 - ABIE40_RS23045 0.17 +1.6 757,951 - ABIE40_RS23045 0.17 -0.3 757,951 - ABIE40_RS23045 0.17 +2.2 757,951 - ABIE40_RS23045 0.17 -0.1 757,951 - ABIE40_RS23045 0.17 -0.5 757,951 - ABIE40_RS23045 0.17 +0.5 757,951 - ABIE40_RS23045 0.17 +2.6 757,951 - ABIE40_RS23045 0.17 +1.2 757,951 - ABIE40_RS23045 0.17 -1.4 757,951 - ABIE40_RS23045 0.17 -0.1 757,951 - ABIE40_RS23045 0.17 +0.2 757,952 + ABIE40_RS23045 0.18 -1.3 757,952 + ABIE40_RS23045 0.18 -0.4 757,952 + ABIE40_RS23045 0.18 -0.1 757,952 + ABIE40_RS23045 0.18 +0.7 757,952 + ABIE40_RS23045 0.18 -2.2 757,952 + ABIE40_RS23045 0.18 +0.5 757,952 + ABIE40_RS23045 0.18 +1.9 757,953 - ABIE40_RS23045 0.18 +0.8 757,953 - ABIE40_RS23045 0.18 +1.1 757,953 - ABIE40_RS23045 0.18 +0.5 757,953 - ABIE40_RS23045 0.18 -1.0 757,953 - ABIE40_RS23045 0.18 +0.6 757,982 + ABIE40_RS23045 0.26 +0.1 757,982 + ABIE40_RS23045 0.26 +1.0 757,983 - ABIE40_RS23045 0.26 -2.6 757,983 - ABIE40_RS23045 0.26 -0.0 757,986 - ABIE40_RS23045 0.27 +0.3 758,007 - ABIE40_RS23045 0.32 +0.6 758,252 + -0.1 758,252 + +0.6 758,252 + -0.2 758,283 + -0.5 758,283 + +0.3 758,284 - -0.6 758,310 - -0.9 758,349 + +0.0 758,350 - +0.5 758,381 + -1.0 758,381 + +2.6 758,382 - -0.9 758,382 - -0.3 758,444 - -0.5 758,464 + -1.6 758,465 - +0.5 758,465 - +0.6 758,465 - -2.5 758,485 + -0.9 758,485 + -0.0 758,485 + +0.2 758,486 - -0.5 758,494 + -0.1 758,494 + -0.3 758,495 - -0.7 758,496 + -0.1 758,496 + +2.6 758,496 + -2.3 758,497 - +0.9 758,497 - +0.1 758,643 + ABIE40_RS23050 0.16 +0.1 758,643 + ABIE40_RS23050 0.16 +0.5 758,643 + ABIE40_RS23050 0.16 +0.8 758,644 - ABIE40_RS23050 0.17 +1.1 758,835 + ABIE40_RS23050 0.39 -0.8 758,835 + ABIE40_RS23050 0.39 -1.3 758,835 + ABIE40_RS23050 0.39 -2.7 758,980 + ABIE40_RS23050 0.56 +0.6 758,980 + ABIE40_RS23050 0.56 -0.2 759,057 + ABIE40_RS23050 0.65 +0.1 759,058 - ABIE40_RS23050 0.65 +0.3 759,058 - ABIE40_RS23050 0.65 +0.1 759,188 + ABIE40_RS23050 0.80 +0.7
Or see this region's nucleotide sequence