Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS22405

Experiment: R2A with 3-octanone 5.3129 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS22400 and ABIE40_RS22405 are separated by 51 nucleotidesABIE40_RS22405 and ABIE40_RS22410 are separated by 211 nucleotides ABIE40_RS22400: ABIE40_RS22400 - mannonate dehydratase, at 611,382 to 612,569 _RS22400 ABIE40_RS22405: ABIE40_RS22405 - GntR family transcriptional regulator, at 612,621 to 613,343 _RS22405 ABIE40_RS22410: ABIE40_RS22410 - extracellular solute-binding protein, at 613,555 to 614,730 _RS22410 Position (kb) 612 613 614Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 611.668 kb on + strand, within ABIE40_RS22400at 611.668 kb on + strand, within ABIE40_RS22400at 611.668 kb on + strand, within ABIE40_RS22400at 611.668 kb on + strand, within ABIE40_RS22400at 611.743 kb on + strand, within ABIE40_RS22400at 611.743 kb on + strand, within ABIE40_RS22400at 611.743 kb on + strand, within ABIE40_RS22400at 611.744 kb on - strand, within ABIE40_RS22400at 611.744 kb on - strand, within ABIE40_RS22400at 611.792 kb on - strand, within ABIE40_RS22400at 611.953 kb on + strand, within ABIE40_RS22400at 612.106 kb on + strand, within ABIE40_RS22400at 612.206 kb on - strand, within ABIE40_RS22400at 612.206 kb on - strand, within ABIE40_RS22400at 612.206 kb on - strand, within ABIE40_RS22400at 612.250 kb on + strand, within ABIE40_RS22400at 612.749 kb on + strand, within ABIE40_RS22405at 612.749 kb on + strand, within ABIE40_RS22405at 612.826 kb on - strand, within ABIE40_RS22405at 612.826 kb on - strand, within ABIE40_RS22405at 612.974 kb on + strand, within ABIE40_RS22405at 613.103 kb on + strand, within ABIE40_RS22405at 613.104 kb on - strand, within ABIE40_RS22405at 613.237 kb on + strand, within ABIE40_RS22405at 613.237 kb on + strand, within ABIE40_RS22405at 613.347 kb on - strandat 613.347 kb on - strandat 613.347 kb on - strandat 613.376 kb on - strandat 613.378 kb on + strandat 613.383 kb on + strandat 613.723 kb on + strand, within ABIE40_RS22410at 613.723 kb on + strand, within ABIE40_RS22410at 613.723 kb on + strand, within ABIE40_RS22410at 613.723 kb on + strand, within ABIE40_RS22410at 613.724 kb on - strand, within ABIE40_RS22410at 613.724 kb on - strand, within ABIE40_RS22410at 613.724 kb on - strand, within ABIE40_RS22410at 613.999 kb on + strand, within ABIE40_RS22410at 613.999 kb on + strand, within ABIE40_RS22410at 613.999 kb on + strand, within ABIE40_RS22410at 613.999 kb on + strand, within ABIE40_RS22410at 613.999 kb on + strand, within ABIE40_RS22410at 613.999 kb on + strand, within ABIE40_RS22410at 614.000 kb on - strand, within ABIE40_RS22410at 614.000 kb on - strand, within ABIE40_RS22410at 614.000 kb on - strand, within ABIE40_RS22410at 614.000 kb on - strand, within ABIE40_RS22410at 614.000 kb on - strand, within ABIE40_RS22410at 614.000 kb on - strand, within ABIE40_RS22410at 614.026 kb on + strand, within ABIE40_RS22410at 614.026 kb on + strand, within ABIE40_RS22410at 614.026 kb on + strand, within ABIE40_RS22410at 614.027 kb on - strand, within ABIE40_RS22410at 614.028 kb on + strand, within ABIE40_RS22410at 614.028 kb on + strand, within ABIE40_RS22410at 614.028 kb on + strand, within ABIE40_RS22410at 614.029 kb on - strand, within ABIE40_RS22410at 614.029 kb on - strand, within ABIE40_RS22410at 614.111 kb on - strand, within ABIE40_RS22410at 614.165 kb on - strand, within ABIE40_RS22410at 614.225 kb on - strand, within ABIE40_RS22410at 614.225 kb on - strand, within ABIE40_RS22410at 614.225 kb on - strand, within ABIE40_RS22410at 614.225 kb on - strand, within ABIE40_RS22410at 614.225 kb on - strand, within ABIE40_RS22410at 614.254 kb on + strand, within ABIE40_RS22410at 614.255 kb on - strand, within ABIE40_RS22410at 614.255 kb on - strand, within ABIE40_RS22410at 614.255 kb on - strand, within ABIE40_RS22410at 614.255 kb on - strand, within ABIE40_RS22410at 614.257 kb on + strand, within ABIE40_RS22410at 614.258 kb on - strand, within ABIE40_RS22410at 614.338 kb on - strand, within ABIE40_RS22410

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.3129 mM
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611,668 + ABIE40_RS22400 0.24 +2.5
611,668 + ABIE40_RS22400 0.24 -0.5
611,668 + ABIE40_RS22400 0.24 -0.3
611,668 + ABIE40_RS22400 0.24 +0.0
611,743 + ABIE40_RS22400 0.30 -1.0
611,743 + ABIE40_RS22400 0.30 -0.2
611,743 + ABIE40_RS22400 0.30 -1.1
611,744 - ABIE40_RS22400 0.30 -0.5
611,744 - ABIE40_RS22400 0.30 -0.4
611,792 - ABIE40_RS22400 0.35 +0.2
611,953 + ABIE40_RS22400 0.48 -1.0
612,106 + ABIE40_RS22400 0.61 -0.8
612,206 - ABIE40_RS22400 0.69 -2.0
612,206 - ABIE40_RS22400 0.69 -1.8
612,206 - ABIE40_RS22400 0.69 +2.5
612,250 + ABIE40_RS22400 0.73 -0.8
612,749 + ABIE40_RS22405 0.18 +1.5
612,749 + ABIE40_RS22405 0.18 -0.0
612,826 - ABIE40_RS22405 0.28 -1.5
612,826 - ABIE40_RS22405 0.28 +0.2
612,974 + ABIE40_RS22405 0.49 +1.0
613,103 + ABIE40_RS22405 0.67 +1.0
613,104 - ABIE40_RS22405 0.67 -1.6
613,237 + ABIE40_RS22405 0.85 +2.5
613,237 + ABIE40_RS22405 0.85 -1.8
613,347 - -0.6
613,347 - -0.6
613,347 - -0.2
613,376 - -2.0
613,378 + +0.2
613,383 + +0.5
613,723 + ABIE40_RS22410 0.14 -0.5
613,723 + ABIE40_RS22410 0.14 +0.7
613,723 + ABIE40_RS22410 0.14 -1.6
613,723 + ABIE40_RS22410 0.14 +2.0
613,724 - ABIE40_RS22410 0.14 -0.3
613,724 - ABIE40_RS22410 0.14 +1.7
613,724 - ABIE40_RS22410 0.14 -0.9
613,999 + ABIE40_RS22410 0.38 -2.6
613,999 + ABIE40_RS22410 0.38 -0.1
613,999 + ABIE40_RS22410 0.38 +0.2
613,999 + ABIE40_RS22410 0.38 -0.4
613,999 + ABIE40_RS22410 0.38 -0.5
613,999 + ABIE40_RS22410 0.38 -1.6
614,000 - ABIE40_RS22410 0.38 -0.7
614,000 - ABIE40_RS22410 0.38 -0.5
614,000 - ABIE40_RS22410 0.38 -2.0
614,000 - ABIE40_RS22410 0.38 +0.5
614,000 - ABIE40_RS22410 0.38 +1.0
614,000 - ABIE40_RS22410 0.38 -0.1
614,026 + ABIE40_RS22410 0.40 -0.5
614,026 + ABIE40_RS22410 0.40 -0.1
614,026 + ABIE40_RS22410 0.40 -1.0
614,027 - ABIE40_RS22410 0.40 -1.4
614,028 + ABIE40_RS22410 0.40 -0.6
614,028 + ABIE40_RS22410 0.40 -2.5
614,028 + ABIE40_RS22410 0.40 +0.6
614,029 - ABIE40_RS22410 0.40 -0.3
614,029 - ABIE40_RS22410 0.40 +0.6
614,111 - ABIE40_RS22410 0.47 +1.4
614,165 - ABIE40_RS22410 0.52 +0.8
614,225 - ABIE40_RS22410 0.57 -0.4
614,225 - ABIE40_RS22410 0.57 -0.6
614,225 - ABIE40_RS22410 0.57 -0.8
614,225 - ABIE40_RS22410 0.57 +0.6
614,225 - ABIE40_RS22410 0.57 -3.2
614,254 + ABIE40_RS22410 0.59 -1.7
614,255 - ABIE40_RS22410 0.60 -1.4
614,255 - ABIE40_RS22410 0.60 +0.1
614,255 - ABIE40_RS22410 0.60 -0.1
614,255 - ABIE40_RS22410 0.60 +0.3
614,257 + ABIE40_RS22410 0.60 -1.4
614,258 - ABIE40_RS22410 0.60 -1.2
614,338 - ABIE40_RS22410 0.67 +0.0

Or see this region's nucleotide sequence