Experiment: R2A with 3-octanone 5.3129 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS04070 and ABIE40_RS04075 overlap by 1 nucleotides ABIE40_RS04075 and ABIE40_RS04080 are separated by 4 nucleotides ABIE40_RS04080 and ABIE40_RS04085 are separated by 58 nucleotides ABIE40_RS04085 and ABIE40_RS04090 are separated by 61 nucleotides ABIE40_RS04090 and ABIE40_RS04095 are separated by 120 nucleotides
ABIE40_RS04070: ABIE40_RS04070 - heme o synthase, at 808,260 to 809,216
_RS04070
ABIE40_RS04075: ABIE40_RS04075 - hypothetical protein, at 809,216 to 809,353
_RS04075
ABIE40_RS04080: ABIE40_RS04080 - cytochrome c oxidase assembly protein, at 809,358 to 809,966
_RS04080
ABIE40_RS04085: ABIE40_RS04085 - cytochrome c oxidase subunit 3, at 810,025 to 810,903
_RS04085
ABIE40_RS04090: ABIE40_RS04090 - chloramphenicol phosphotransferase, at 810,965 to 811,606
_RS04090
ABIE40_RS04095: ABIE40_RS04095 - DUF983 domain-containing protein, at 811,727 to 812,107
_RS04095
Position (kb) 810
811 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 809.050 kb on + strand, within ABIE40_RS04070 at 809.051 kb on - strand, within ABIE40_RS04070 at 809.051 kb on - strand, within ABIE40_RS04070 at 809.051 kb on - strand, within ABIE40_RS04070 at 809.137 kb on - strand at 809.137 kb on - strand at 809.207 kb on + strand at 809.208 kb on - strand at 809.208 kb on - strand at 809.312 kb on + strand, within ABIE40_RS04075 at 809.313 kb on - strand, within ABIE40_RS04075 at 809.313 kb on - strand, within ABIE40_RS04075 at 809.313 kb on - strand, within ABIE40_RS04075 at 809.324 kb on + strand, within ABIE40_RS04075 at 809.457 kb on + strand, within ABIE40_RS04080 at 809.457 kb on + strand, within ABIE40_RS04080 at 809.458 kb on - strand, within ABIE40_RS04080 at 809.458 kb on - strand, within ABIE40_RS04080 at 809.458 kb on - strand, within ABIE40_RS04080 at 809.742 kb on + strand, within ABIE40_RS04080 at 809.742 kb on + strand, within ABIE40_RS04080 at 809.743 kb on - strand, within ABIE40_RS04080 at 809.743 kb on - strand, within ABIE40_RS04080 at 809.823 kb on + strand, within ABIE40_RS04080 at 809.840 kb on + strand, within ABIE40_RS04080 at 809.886 kb on + strand, within ABIE40_RS04080 at 809.886 kb on + strand, within ABIE40_RS04080 at 809.887 kb on - strand, within ABIE40_RS04080 at 809.887 kb on - strand, within ABIE40_RS04080 at 809.887 kb on - strand, within ABIE40_RS04080 at 809.888 kb on + strand, within ABIE40_RS04080 at 809.888 kb on + strand, within ABIE40_RS04080 at 809.888 kb on + strand, within ABIE40_RS04080 at 809.888 kb on + strand, within ABIE40_RS04080 at 809.888 kb on + strand, within ABIE40_RS04080 at 809.888 kb on + strand, within ABIE40_RS04080 at 809.889 kb on - strand, within ABIE40_RS04080 at 809.889 kb on - strand, within ABIE40_RS04080 at 809.889 kb on - strand, within ABIE40_RS04080 at 809.889 kb on - strand, within ABIE40_RS04080 at 809.889 kb on - strand, within ABIE40_RS04080 at 809.889 kb on - strand, within ABIE40_RS04080 at 809.889 kb on - strand, within ABIE40_RS04080 at 809.889 kb on - strand, within ABIE40_RS04080 at 809.895 kb on + strand, within ABIE40_RS04080 at 810.020 kb on + strand at 810.021 kb on - strand at 810.021 kb on - strand at 810.021 kb on - strand at 810.021 kb on - strand at 810.021 kb on - strand at 810.055 kb on + strand at 810.055 kb on + strand at 810.055 kb on + strand at 810.056 kb on - strand at 810.056 kb on - strand at 810.056 kb on - strand at 810.060 kb on + strand at 810.060 kb on + strand at 810.060 kb on + strand at 810.060 kb on + strand at 810.060 kb on + strand at 810.060 kb on + strand at 810.060 kb on + strand at 810.060 kb on + strand at 810.061 kb on - strand at 810.061 kb on - strand at 810.061 kb on - strand at 810.133 kb on + strand, within ABIE40_RS04085 at 810.134 kb on - strand, within ABIE40_RS04085 at 810.134 kb on - strand, within ABIE40_RS04085 at 810.134 kb on - strand, within ABIE40_RS04085 at 810.134 kb on - strand, within ABIE40_RS04085 at 810.142 kb on + strand, within ABIE40_RS04085 at 810.143 kb on - strand, within ABIE40_RS04085 at 810.226 kb on + strand, within ABIE40_RS04085 at 810.227 kb on - strand, within ABIE40_RS04085 at 810.227 kb on - strand, within ABIE40_RS04085 at 810.227 kb on - strand, within ABIE40_RS04085 at 810.235 kb on + strand, within ABIE40_RS04085 at 810.235 kb on + strand, within ABIE40_RS04085 at 810.235 kb on + strand, within ABIE40_RS04085 at 810.235 kb on + strand, within ABIE40_RS04085 at 810.235 kb on + strand, within ABIE40_RS04085 at 810.236 kb on - strand, within ABIE40_RS04085 at 810.236 kb on - strand, within ABIE40_RS04085 at 810.236 kb on - strand, within ABIE40_RS04085 at 810.236 kb on - strand, within ABIE40_RS04085 at 810.371 kb on - strand, within ABIE40_RS04085 at 810.487 kb on + strand, within ABIE40_RS04085 at 810.487 kb on + strand, within ABIE40_RS04085 at 810.635 kb on - strand, within ABIE40_RS04085 at 810.671 kb on - strand, within ABIE40_RS04085 at 810.815 kb on - strand, within ABIE40_RS04085 at 810.862 kb on + strand at 810.862 kb on + strand at 810.862 kb on + strand at 810.862 kb on + strand at 810.863 kb on - strand at 810.863 kb on - strand at 810.913 kb on + strand at 810.914 kb on - strand at 810.922 kb on + strand at 810.922 kb on + strand at 810.923 kb on - strand at 810.923 kb on - strand at 811.070 kb on - strand, within ABIE40_RS04090 at 811.070 kb on - strand, within ABIE40_RS04090 at 811.070 kb on - strand, within ABIE40_RS04090 at 811.070 kb on - strand, within ABIE40_RS04090 at 811.070 kb on - strand, within ABIE40_RS04090 at 811.086 kb on + strand, within ABIE40_RS04090 at 811.086 kb on + strand, within ABIE40_RS04090 at 811.086 kb on + strand, within ABIE40_RS04090 at 811.087 kb on - strand, within ABIE40_RS04090 at 811.087 kb on - strand, within ABIE40_RS04090 at 811.087 kb on - strand, within ABIE40_RS04090 at 811.087 kb on - strand, within ABIE40_RS04090 at 811.087 kb on - strand, within ABIE40_RS04090 at 811.087 kb on - strand, within ABIE40_RS04090 at 811.164 kb on + strand, within ABIE40_RS04090 at 811.164 kb on + strand, within ABIE40_RS04090 at 811.164 kb on + strand, within ABIE40_RS04090 at 811.164 kb on + strand, within ABIE40_RS04090 at 811.165 kb on - strand, within ABIE40_RS04090 at 811.165 kb on - strand, within ABIE40_RS04090 at 811.165 kb on - strand, within ABIE40_RS04090 at 811.165 kb on - strand, within ABIE40_RS04090 at 811.165 kb on - strand, within ABIE40_RS04090 at 811.165 kb on - strand, within ABIE40_RS04090 at 811.303 kb on - strand, within ABIE40_RS04090 at 811.383 kb on + strand, within ABIE40_RS04090 at 811.383 kb on + strand, within ABIE40_RS04090 at 811.383 kb on + strand, within ABIE40_RS04090 at 811.383 kb on + strand, within ABIE40_RS04090 at 811.383 kb on + strand, within ABIE40_RS04090 at 811.383 kb on + strand, within ABIE40_RS04090 at 811.384 kb on - strand, within ABIE40_RS04090 at 811.384 kb on - strand, within ABIE40_RS04090 at 811.452 kb on + strand, within ABIE40_RS04090 at 811.453 kb on - strand, within ABIE40_RS04090 at 811.476 kb on + strand, within ABIE40_RS04090 at 811.476 kb on + strand, within ABIE40_RS04090 at 811.477 kb on - strand, within ABIE40_RS04090 at 811.477 kb on - strand, within ABIE40_RS04090 at 811.477 kb on - strand, within ABIE40_RS04090 at 811.477 kb on - strand, within ABIE40_RS04090 at 811.477 kb on - strand, within ABIE40_RS04090 at 811.656 kb on + strand at 811.657 kb on - strand at 811.657 kb on - strand at 811.682 kb on + strand at 811.683 kb on - strand at 811.693 kb on + strand at 811.704 kb on + strand at 811.704 kb on + strand at 811.704 kb on + strand at 811.704 kb on + strand at 811.705 kb on - strand at 811.705 kb on - strand at 811.869 kb on - strand, within ABIE40_RS04095 at 811.869 kb on - strand, within ABIE40_RS04095 at 811.869 kb on - strand, within ABIE40_RS04095 at 811.869 kb on - strand, within ABIE40_RS04095 at 811.869 kb on - strand, within ABIE40_RS04095 at 811.869 kb on - strand, within ABIE40_RS04095 at 811.869 kb on - strand, within ABIE40_RS04095
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.3129 mM remove 809,050 + ABIE40_RS04070 0.83 +0.1 809,051 - ABIE40_RS04070 0.83 -2.0 809,051 - ABIE40_RS04070 0.83 +0.6 809,051 - ABIE40_RS04070 0.83 -0.9 809,137 - -1.3 809,137 - -1.4 809,207 + -0.3 809,208 - +0.6 809,208 - -1.3 809,312 + ABIE40_RS04075 0.70 -1.1 809,313 - ABIE40_RS04075 0.70 -1.8 809,313 - ABIE40_RS04075 0.70 -1.3 809,313 - ABIE40_RS04075 0.70 -2.4 809,324 + ABIE40_RS04075 0.78 -1.2 809,457 + ABIE40_RS04080 0.16 -0.3 809,457 + ABIE40_RS04080 0.16 +0.1 809,458 - ABIE40_RS04080 0.16 -0.2 809,458 - ABIE40_RS04080 0.16 +1.1 809,458 - ABIE40_RS04080 0.16 -2.0 809,742 + ABIE40_RS04080 0.63 -1.7 809,742 + ABIE40_RS04080 0.63 -0.9 809,743 - ABIE40_RS04080 0.63 -3.1 809,743 - ABIE40_RS04080 0.63 -2.8 809,823 + ABIE40_RS04080 0.76 -1.0 809,840 + ABIE40_RS04080 0.79 +0.1 809,886 + ABIE40_RS04080 0.87 -1.0 809,886 + ABIE40_RS04080 0.87 +0.1 809,887 - ABIE40_RS04080 0.87 -1.6 809,887 - ABIE40_RS04080 0.87 -1.4 809,887 - ABIE40_RS04080 0.87 -2.4 809,888 + ABIE40_RS04080 0.87 -1.5 809,888 + ABIE40_RS04080 0.87 -1.6 809,888 + ABIE40_RS04080 0.87 -2.0 809,888 + ABIE40_RS04080 0.87 -1.2 809,888 + ABIE40_RS04080 0.87 -1.0 809,888 + ABIE40_RS04080 0.87 -0.0 809,889 - ABIE40_RS04080 0.87 -1.4 809,889 - ABIE40_RS04080 0.87 +0.5 809,889 - ABIE40_RS04080 0.87 +0.1 809,889 - ABIE40_RS04080 0.87 -1.4 809,889 - ABIE40_RS04080 0.87 -0.4 809,889 - ABIE40_RS04080 0.87 -1.9 809,889 - ABIE40_RS04080 0.87 -1.7 809,889 - ABIE40_RS04080 0.87 -0.2 809,895 + ABIE40_RS04080 0.88 -1.1 810,020 + +0.4 810,021 - -0.7 810,021 - -1.4 810,021 - +0.1 810,021 - -2.6 810,021 - -2.3 810,055 + -1.8 810,055 + -4.1 810,055 + -0.8 810,056 - +2.1 810,056 - -0.7 810,056 - -0.2 810,060 + -0.4 810,060 + -1.4 810,060 + -0.2 810,060 + +0.6 810,060 + +0.6 810,060 + -2.8 810,060 + -1.6 810,060 + -0.5 810,061 - +0.1 810,061 - -2.5 810,061 - -2.3 810,133 + ABIE40_RS04085 0.12 -3.2 810,134 - ABIE40_RS04085 0.12 +1.1 810,134 - ABIE40_RS04085 0.12 -1.4 810,134 - ABIE40_RS04085 0.12 -0.5 810,134 - ABIE40_RS04085 0.12 -0.2 810,142 + ABIE40_RS04085 0.13 -2.3 810,143 - ABIE40_RS04085 0.13 -1.2 810,226 + ABIE40_RS04085 0.23 -0.5 810,227 - ABIE40_RS04085 0.23 -1.7 810,227 - ABIE40_RS04085 0.23 -3.0 810,227 - ABIE40_RS04085 0.23 -0.4 810,235 + ABIE40_RS04085 0.24 +1.1 810,235 + ABIE40_RS04085 0.24 -0.4 810,235 + ABIE40_RS04085 0.24 -1.5 810,235 + ABIE40_RS04085 0.24 -2.1 810,235 + ABIE40_RS04085 0.24 +0.1 810,236 - ABIE40_RS04085 0.24 -0.2 810,236 - ABIE40_RS04085 0.24 +2.1 810,236 - ABIE40_RS04085 0.24 -1.7 810,236 - ABIE40_RS04085 0.24 +2.1 810,371 - ABIE40_RS04085 0.39 -2.4 810,487 + ABIE40_RS04085 0.53 -1.5 810,487 + ABIE40_RS04085 0.53 -1.8 810,635 - ABIE40_RS04085 0.69 -2.0 810,671 - ABIE40_RS04085 0.73 +2.1 810,815 - ABIE40_RS04085 0.90 -1.6 810,862 + -0.6 810,862 + -0.6 810,862 + -0.8 810,862 + -0.4 810,863 - -3.6 810,863 - -1.6 810,913 + -1.0 810,914 - -0.9 810,922 + +0.2 810,922 + -0.8 810,923 - -1.0 810,923 - -1.7 811,070 - ABIE40_RS04090 0.16 -1.7 811,070 - ABIE40_RS04090 0.16 -1.7 811,070 - ABIE40_RS04090 0.16 -1.3 811,070 - ABIE40_RS04090 0.16 -0.3 811,070 - ABIE40_RS04090 0.16 +1.1 811,086 + ABIE40_RS04090 0.19 +0.2 811,086 + ABIE40_RS04090 0.19 +0.3 811,086 + ABIE40_RS04090 0.19 -0.3 811,087 - ABIE40_RS04090 0.19 -0.5 811,087 - ABIE40_RS04090 0.19 +0.3 811,087 - ABIE40_RS04090 0.19 +0.1 811,087 - ABIE40_RS04090 0.19 +1.1 811,087 - ABIE40_RS04090 0.19 +0.1 811,087 - ABIE40_RS04090 0.19 -0.9 811,164 + ABIE40_RS04090 0.31 -0.1 811,164 + ABIE40_RS04090 0.31 -0.2 811,164 + ABIE40_RS04090 0.31 +1.0 811,164 + ABIE40_RS04090 0.31 +0.8 811,165 - ABIE40_RS04090 0.31 -0.6 811,165 - ABIE40_RS04090 0.31 -1.6 811,165 - ABIE40_RS04090 0.31 +0.0 811,165 - ABIE40_RS04090 0.31 -0.0 811,165 - ABIE40_RS04090 0.31 +0.8 811,165 - ABIE40_RS04090 0.31 +0.4 811,303 - ABIE40_RS04090 0.53 -1.8 811,383 + ABIE40_RS04090 0.65 -1.0 811,383 + ABIE40_RS04090 0.65 +2.1 811,383 + ABIE40_RS04090 0.65 +0.1 811,383 + ABIE40_RS04090 0.65 -0.7 811,383 + ABIE40_RS04090 0.65 -0.6 811,383 + ABIE40_RS04090 0.65 -2.4 811,384 - ABIE40_RS04090 0.65 +2.5 811,384 - ABIE40_RS04090 0.65 +0.2 811,452 + ABIE40_RS04090 0.76 +1.7 811,453 - ABIE40_RS04090 0.76 -1.1 811,476 + ABIE40_RS04090 0.80 +3.1 811,476 + ABIE40_RS04090 0.80 -0.2 811,477 - ABIE40_RS04090 0.80 -0.1 811,477 - ABIE40_RS04090 0.80 -0.9 811,477 - ABIE40_RS04090 0.80 -1.4 811,477 - ABIE40_RS04090 0.80 -0.2 811,477 - ABIE40_RS04090 0.80 -0.8 811,656 + -1.6 811,657 - +1.2 811,657 - +0.1 811,682 + -0.1 811,683 - +0.9 811,693 + -0.4 811,704 + -0.2 811,704 + +1.1 811,704 + -0.9 811,704 + -2.0 811,705 - -0.8 811,705 - +1.1 811,869 - ABIE40_RS04095 0.37 -0.1 811,869 - ABIE40_RS04095 0.37 -0.9 811,869 - ABIE40_RS04095 0.37 -1.3 811,869 - ABIE40_RS04095 0.37 -0.4 811,869 - ABIE40_RS04095 0.37 +0.3 811,869 - ABIE40_RS04095 0.37 -0.7 811,869 - ABIE40_RS04095 0.37 +0.8
Or see this region's nucleotide sequence