Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS14890

Experiment: R2A with 3-octanone 5.3129 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with 3-octanone 5.3129 mM
2,920,788	+				-0.5
2,920,789	-				+0.1
2,920,789	-				+0.6
2,921,039	-		ABIE40_RS14885	0.34	-1.2
2,921,065	+		ABIE40_RS14885	0.37	-0.4
2,921,065	+		ABIE40_RS14885	0.37	-0.4
2,921,066	-		ABIE40_RS14885	0.37	-0.2
2,921,066	-		ABIE40_RS14885	0.37	-0.4
2,921,066	-		ABIE40_RS14885	0.37	-0.4
2,921,191	+		ABIE40_RS14885	0.53	+1.0
2,921,192	-		ABIE40_RS14885	0.53	-0.7
2,921,192	-		ABIE40_RS14885	0.53	-0.6
2,921,192	-		ABIE40_RS14885	0.53	+0.2
2,921,308	+		ABIE40_RS14885	0.67	-0.1
2,921,308	+		ABIE40_RS14885	0.67	+1.0
2,921,308	+		ABIE40_RS14885	0.67	-1.4
2,921,308	-		ABIE40_RS14885	0.67	+0.6
2,921,309	-		ABIE40_RS14885	0.67	+0.9
2,921,309	-		ABIE40_RS14885	0.67	+1.5
2,921,309	-		ABIE40_RS14885	0.67	-0.0
2,921,309	-		ABIE40_RS14885	0.67	+0.4
2,921,309	-		ABIE40_RS14885	0.67	+0.5
2,921,309	-		ABIE40_RS14885	0.67	+0.6
2,921,371	+		ABIE40_RS14885	0.75	+0.4
2,921,371	+		ABIE40_RS14885	0.75	+3.5
2,921,372	-		ABIE40_RS14885	0.75	+0.5
2,921,372	-		ABIE40_RS14885	0.75	+2.5
2,921,468	-		ABIE40_RS14885	0.87	+0.4
2,921,509	+				-2.2
2,921,585	+				-1.6
2,921,585	+				-0.9
2,921,585	+				-0.5
2,921,585	+				-2.1
2,921,585	+				-0.6
2,921,585	+				-0.4
2,921,585	+				-1.0
2,921,586	-				+0.5
2,921,586	-				-0.5
2,921,586	-				-0.2
2,921,586	-				+0.3
2,921,586	-				-0.0
2,921,586	-				+0.3
2,921,586	-				-0.4
2,921,586	-				-0.8
2,921,602	+				-1.5
2,921,603	-				-0.9
2,921,603	-				-0.4
2,921,647	+				+0.5
2,921,670	-				-1.6
2,921,710	-				+0.6
2,921,793	-				-0.1
2,921,798	+				-0.5
2,921,798	+				+0.5
2,921,799	-				-1.4
2,921,828	+				+0.1
2,921,829	-				+1.0
2,921,829	-				-2.3
2,921,829	-				-0.9
2,921,829	-				-1.7
2,921,895	-		ABIE40_RS14890	0.17	+0.8
2,921,895	-		ABIE40_RS14890	0.17	-0.8
2,921,934	+		ABIE40_RS14890	0.21	-0.3
2,921,934	+		ABIE40_RS14890	0.21	-0.0
2,921,934	+		ABIE40_RS14890	0.21	-0.8
2,921,935	-		ABIE40_RS14890	0.21	+0.7
2,921,935	-		ABIE40_RS14890	0.21	-0.7
2,921,938	-		ABIE40_RS14890	0.21	-0.6
2,922,022	+		ABIE40_RS14890	0.31	-1.0
2,922,022	+		ABIE40_RS14890	0.31	-0.3
2,922,023	-		ABIE40_RS14890	0.31	-1.0
2,922,023	-		ABIE40_RS14890	0.31	+1.0
2,922,084	+		ABIE40_RS14890	0.38	-0.6
2,922,084	+		ABIE40_RS14890	0.38	+1.0
2,922,252	+		ABIE40_RS14890	0.56	-0.2
2,922,252	+		ABIE40_RS14890	0.56	+1.5
2,922,252	+		ABIE40_RS14890	0.56	-0.9
2,922,253	-		ABIE40_RS14890	0.56	-0.7
2,922,306	+		ABIE40_RS14890	0.62	-0.1
2,922,306	+		ABIE40_RS14890	0.62	+0.1
2,922,306	+		ABIE40_RS14890	0.62	-1.5
2,922,307	-		ABIE40_RS14890	0.62	-1.0
2,922,307	-		ABIE40_RS14890	0.62	-1.1
2,922,319	-		ABIE40_RS14890	0.63	-1.3
2,922,396	+		ABIE40_RS14890	0.72	+0.7
2,922,396	+		ABIE40_RS14890	0.72	-0.2
2,922,396	+		ABIE40_RS14890	0.72	+0.7
2,922,396	+		ABIE40_RS14890	0.72	+0.8
2,922,396	+		ABIE40_RS14890	0.72	+0.2
2,922,396	+		ABIE40_RS14890	0.72	-3.0
2,922,397	-		ABIE40_RS14890	0.72	-1.3
2,922,397	-		ABIE40_RS14890	0.72	-0.6
2,922,397	-		ABIE40_RS14890	0.72	-2.0
2,922,397	-		ABIE40_RS14890	0.72	-2.1
2,922,397	-		ABIE40_RS14890	0.72	-0.9
2,922,398	+		ABIE40_RS14890	0.72	-0.5
2,922,398	+		ABIE40_RS14890	0.72	-1.2
2,922,398	+		ABIE40_RS14890	0.72	-1.0
2,922,398	+		ABIE40_RS14890	0.72	+0.1
2,922,398	+		ABIE40_RS14890	0.72	-0.0
2,922,398	+		ABIE40_RS14890	0.72	-0.5
2,922,399	-		ABIE40_RS14890	0.72	-1.5
2,922,399	-		ABIE40_RS14890	0.72	-0.6
2,922,399	-		ABIE40_RS14890	0.72	-0.9
2,922,399	-		ABIE40_RS14890	0.72	-0.2
2,922,399	-		ABIE40_RS14890	0.72	-0.1
2,922,399	-		ABIE40_RS14890	0.72	-1.5
2,922,399	-		ABIE40_RS14890	0.72	-1.2
2,922,552	+		ABIE40_RS14890	0.89	-1.0
2,922,552	+		ABIE40_RS14890	0.89	+0.0
2,922,553	-		ABIE40_RS14890	0.89	-0.9
2,922,553	-		ABIE40_RS14890	0.89	-0.4
2,922,553	-		ABIE40_RS14890	0.89	-2.0
2,922,553	-		ABIE40_RS14890	0.89	-0.9
2,922,553	-		ABIE40_RS14890	0.89	-2.3
2,922,716	+				+0.4
2,922,807	-				+0.2
2,922,807	-				-0.8
2,922,810	+				-0.4
2,922,810	+				-1.0
2,922,810	+				-1.2
2,922,810	+				+0.2
2,922,811	-				+0.2
2,922,811	-				-0.9
2,922,811	-				-1.6
2,922,811	-				+0.3
2,922,811	-				+0.6
2,922,811	-				-1.0
2,922,811	-				+0.3
2,922,811	-				+0.2
2,922,811	-				+0.5
2,922,812	+				+0.3
2,922,812	+				-1.7
2,922,812	+				-2.3
2,922,812	+				-0.9
2,922,813	-				+0.1
2,922,813	-				+0.0
2,922,852	-				+0.1
2,922,934	+				+1.4
2,922,934	+				+1.2
2,922,935	-				-0.0
2,923,128	+		ABIE40_RS14895	0.27	+0.4
2,923,138	+		ABIE40_RS14895	0.28	-0.0
2,923,138	+		ABIE40_RS14895	0.28	-1.8
2,923,138	+		ABIE40_RS14895	0.28	+0.4
2,923,139	-		ABIE40_RS14895	0.28	-1.4
2,923,153	+		ABIE40_RS14895	0.29	+1.0
2,923,154	-		ABIE40_RS14895	0.29	+0.4
2,923,276	+		ABIE40_RS14895	0.43	+1.0
2,923,277	-		ABIE40_RS14895	0.43	-0.1
2,923,318	+		ABIE40_RS14895	0.48	+0.5
2,923,318	+		ABIE40_RS14895	0.48	+0.1
2,923,318	+		ABIE40_RS14895	0.48	+0.5
2,923,318	+		ABIE40_RS14895	0.48	-0.1
2,923,318	+		ABIE40_RS14895	0.48	+0.0
2,923,319	-		ABIE40_RS14895	0.48	-1.1
2,923,319	-		ABIE40_RS14895	0.48	-1.4
2,923,465	+		ABIE40_RS14895	0.64	-0.2
2,923,465	+		ABIE40_RS14895	0.64	-0.4
2,923,466	-		ABIE40_RS14895	0.64	-1.0
2,923,466	-		ABIE40_RS14895	0.64	+0.4
2,923,466	-		ABIE40_RS14895	0.64	-0.1
2,923,466	-		ABIE40_RS14895	0.64	-1.0
2,923,466	-		ABIE40_RS14895	0.64	-0.4
2,923,630	+		ABIE40_RS14895	0.82	+0.5