Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS19630

Experiment: R2A with 3-octanone 5.3129 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS19620 and ABIE40_RS19625 are separated by 93 nucleotidesABIE40_RS19625 and ABIE40_RS19630 overlap by 4 nucleotidesABIE40_RS19630 and ABIE40_RS19635 are separated by 9 nucleotidesABIE40_RS19635 and ABIE40_RS19640 overlap by 1 nucleotides ABIE40_RS19620: ABIE40_RS19620 - pca operon transcription factor PcaQ, at 19,493 to 20,419 _RS19620 ABIE40_RS19625: ABIE40_RS19625 - 3-oxoadipate enol-lactonase, at 20,513 to 21,322 _RS19625 ABIE40_RS19630: ABIE40_RS19630 - 4-carboxymuconolactone decarboxylase, at 21,319 to 21,723 _RS19630 ABIE40_RS19635: ABIE40_RS19635 - protocatechuate 3,4-dioxygenase subunit beta, at 21,733 to 22,482 _RS19635 ABIE40_RS19640: ABIE40_RS19640 - protocatechuate 3,4-dioxygenase subunit alpha, at 22,482 to 23,096 _RS19640 Position (kb) 21 22Strain fitness (log2 ratio) -2 -1 0 1 2 3at 20.402 kb on + strandat 20.467 kb on - strandat 20.549 kb on + strandat 20.549 kb on + strandat 20.673 kb on - strand, within ABIE40_RS19625at 20.725 kb on - strand, within ABIE40_RS19625at 20.829 kb on - strand, within ABIE40_RS19625at 20.829 kb on - strand, within ABIE40_RS19625at 21.011 kb on + strand, within ABIE40_RS19625at 21.011 kb on + strand, within ABIE40_RS19625at 21.011 kb on + strand, within ABIE40_RS19625at 21.011 kb on + strand, within ABIE40_RS19625at 21.011 kb on + strand, within ABIE40_RS19625at 21.012 kb on - strand, within ABIE40_RS19625at 21.012 kb on - strand, within ABIE40_RS19625at 21.012 kb on - strand, within ABIE40_RS19625at 21.012 kb on - strand, within ABIE40_RS19625at 21.012 kb on - strand, within ABIE40_RS19625at 21.020 kb on + strand, within ABIE40_RS19625at 21.057 kb on - strand, within ABIE40_RS19625at 21.112 kb on + strand, within ABIE40_RS19625at 21.589 kb on - strand, within ABIE40_RS19630at 21.640 kb on + strand, within ABIE40_RS19630at 21.640 kb on + strand, within ABIE40_RS19630at 21.640 kb on + strand, within ABIE40_RS19630at 21.640 kb on + strand, within ABIE40_RS19630at 21.641 kb on - strand, within ABIE40_RS19630at 21.641 kb on - strand, within ABIE40_RS19630at 21.641 kb on - strand, within ABIE40_RS19630at 21.641 kb on - strand, within ABIE40_RS19630at 21.721 kb on + strandat 21.721 kb on + strandat 21.721 kb on + strandat 21.722 kb on - strandat 21.743 kb on + strandat 21.820 kb on + strand, within ABIE40_RS19635at 21.945 kb on + strand, within ABIE40_RS19635at 21.945 kb on + strand, within ABIE40_RS19635at 21.945 kb on + strand, within ABIE40_RS19635at 21.946 kb on - strand, within ABIE40_RS19635at 21.946 kb on - strand, within ABIE40_RS19635at 21.946 kb on - strand, within ABIE40_RS19635at 21.946 kb on - strand, within ABIE40_RS19635at 21.946 kb on - strand, within ABIE40_RS19635at 21.949 kb on + strand, within ABIE40_RS19635at 22.096 kb on + strand, within ABIE40_RS19635at 22.096 kb on + strand, within ABIE40_RS19635at 22.096 kb on + strand, within ABIE40_RS19635at 22.096 kb on + strand, within ABIE40_RS19635at 22.097 kb on - strand, within ABIE40_RS19635at 22.097 kb on - strand, within ABIE40_RS19635at 22.097 kb on - strand, within ABIE40_RS19635at 22.162 kb on + strand, within ABIE40_RS19635at 22.163 kb on - strand, within ABIE40_RS19635at 22.163 kb on - strand, within ABIE40_RS19635at 22.163 kb on - strand, within ABIE40_RS19635at 22.165 kb on + strand, within ABIE40_RS19635at 22.165 kb on + strand, within ABIE40_RS19635at 22.166 kb on - strand, within ABIE40_RS19635at 22.234 kb on - strand, within ABIE40_RS19635at 22.288 kb on + strand, within ABIE40_RS19635at 22.288 kb on + strand, within ABIE40_RS19635at 22.288 kb on + strand, within ABIE40_RS19635at 22.289 kb on - strand, within ABIE40_RS19635at 22.289 kb on - strand, within ABIE40_RS19635at 22.289 kb on - strand, within ABIE40_RS19635at 22.332 kb on + strand, within ABIE40_RS19635at 22.389 kb on + strand, within ABIE40_RS19635at 22.389 kb on + strand, within ABIE40_RS19635at 22.389 kb on + strand, within ABIE40_RS19635at 22.390 kb on - strand, within ABIE40_RS19635at 22.390 kb on - strand, within ABIE40_RS19635at 22.390 kb on - strand, within ABIE40_RS19635at 22.390 kb on - strand, within ABIE40_RS19635at 22.414 kb on + strandat 22.414 kb on + strandat 22.415 kb on - strandat 22.415 kb on - strandat 22.415 kb on - strandat 22.500 kb on + strandat 22.500 kb on + strandat 22.536 kb on + strandat 22.536 kb on + strandat 22.536 kb on + strandat 22.536 kb on + strandat 22.536 kb on + strandat 22.537 kb on - strandat 22.537 kb on - strandat 22.537 kb on - strandat 22.537 kb on - strandat 22.537 kb on - strandat 22.584 kb on + strand, within ABIE40_RS19640at 22.584 kb on + strand, within ABIE40_RS19640at 22.585 kb on - strand, within ABIE40_RS19640at 22.585 kb on - strand, within ABIE40_RS19640

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.3129 mM
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20,402 + -0.6
20,467 - +1.4
20,549 + +0.5
20,549 + -0.5
20,673 - ABIE40_RS19625 0.20 -0.2
20,725 - ABIE40_RS19625 0.26 +0.3
20,829 - ABIE40_RS19625 0.39 -0.2
20,829 - ABIE40_RS19625 0.39 +2.1
21,011 + ABIE40_RS19625 0.61 -0.0
21,011 + ABIE40_RS19625 0.61 -0.2
21,011 + ABIE40_RS19625 0.61 +1.1
21,011 + ABIE40_RS19625 0.61 +0.1
21,011 + ABIE40_RS19625 0.61 +0.8
21,012 - ABIE40_RS19625 0.62 -0.4
21,012 - ABIE40_RS19625 0.62 -0.6
21,012 - ABIE40_RS19625 0.62 -0.1
21,012 - ABIE40_RS19625 0.62 +0.5
21,012 - ABIE40_RS19625 0.62 +0.3
21,020 + ABIE40_RS19625 0.63 -0.3
21,057 - ABIE40_RS19625 0.67 +0.0
21,112 + ABIE40_RS19625 0.74 -1.7
21,589 - ABIE40_RS19630 0.67 +0.9
21,640 + ABIE40_RS19630 0.79 -0.5
21,640 + ABIE40_RS19630 0.79 +3.4
21,640 + ABIE40_RS19630 0.79 +0.3
21,640 + ABIE40_RS19630 0.79 +0.1
21,641 - ABIE40_RS19630 0.80 -2.7
21,641 - ABIE40_RS19630 0.80 +0.3
21,641 - ABIE40_RS19630 0.80 -0.8
21,641 - ABIE40_RS19630 0.80 -0.4
21,721 + -0.7
21,721 + +0.8
21,721 + -0.2
21,722 - +0.1
21,743 + +0.5
21,820 + ABIE40_RS19635 0.12 -0.9
21,945 + ABIE40_RS19635 0.28 -1.5
21,945 + ABIE40_RS19635 0.28 +1.1
21,945 + ABIE40_RS19635 0.28 +1.4
21,946 - ABIE40_RS19635 0.28 +0.7
21,946 - ABIE40_RS19635 0.28 +0.3
21,946 - ABIE40_RS19635 0.28 -2.4
21,946 - ABIE40_RS19635 0.28 -0.8
21,946 - ABIE40_RS19635 0.28 -0.5
21,949 + ABIE40_RS19635 0.29 -0.9
22,096 + ABIE40_RS19635 0.48 +0.3
22,096 + ABIE40_RS19635 0.48 -2.6
22,096 + ABIE40_RS19635 0.48 +1.1
22,096 + ABIE40_RS19635 0.48 +0.1
22,097 - ABIE40_RS19635 0.49 +0.1
22,097 - ABIE40_RS19635 0.49 -2.7
22,097 - ABIE40_RS19635 0.49 +0.9
22,162 + ABIE40_RS19635 0.57 +0.3
22,163 - ABIE40_RS19635 0.57 -1.2
22,163 - ABIE40_RS19635 0.57 +1.5
22,163 - ABIE40_RS19635 0.57 -0.8
22,165 + ABIE40_RS19635 0.58 +0.3
22,165 + ABIE40_RS19635 0.58 +1.1
22,166 - ABIE40_RS19635 0.58 -2.2
22,234 - ABIE40_RS19635 0.67 -0.2
22,288 + ABIE40_RS19635 0.74 +0.8
22,288 + ABIE40_RS19635 0.74 -0.0
22,288 + ABIE40_RS19635 0.74 -0.3
22,289 - ABIE40_RS19635 0.74 +0.8
22,289 - ABIE40_RS19635 0.74 +0.1
22,289 - ABIE40_RS19635 0.74 +0.5
22,332 + ABIE40_RS19635 0.80 -0.9
22,389 + ABIE40_RS19635 0.87 -2.3
22,389 + ABIE40_RS19635 0.87 +2.5
22,389 + ABIE40_RS19635 0.87 +0.9
22,390 - ABIE40_RS19635 0.88 +2.1
22,390 - ABIE40_RS19635 0.88 -0.3
22,390 - ABIE40_RS19635 0.88 +0.4
22,390 - ABIE40_RS19635 0.88 +2.1
22,414 + -1.3
22,414 + -0.5
22,415 - -0.7
22,415 - -1.8
22,415 - +2.1
22,500 + -2.0
22,500 + -1.0
22,536 + +2.1
22,536 + +0.1
22,536 + -0.2
22,536 + -1.8
22,536 + +1.4
22,537 - +0.5
22,537 - +1.1
22,537 - -1.4
22,537 - +2.1
22,537 - -0.1
22,584 + ABIE40_RS19640 0.17 -0.2
22,584 + ABIE40_RS19640 0.17 +0.3
22,585 - ABIE40_RS19640 0.17 +1.7
22,585 - ABIE40_RS19640 0.17 -0.7

Or see this region's nucleotide sequence