Experiment: R2A with 3-octanone 5.3129 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS29710 and ABIE40_RS29715 are separated by 643 nucleotides ABIE40_RS29715 and ABIE40_RS29720 are separated by 354 nucleotides
ABIE40_RS29710: ABIE40_RS29710 - hypothetical protein, at 634,416 to 634,577
_RS29710
ABIE40_RS29715: ABIE40_RS29715 - hypothetical protein, at 635,221 to 635,343
_RS29715
ABIE40_RS29720: ABIE40_RS29720 - hypothetical protein, at 635,698 to 638,055
_RS29720
Position (kb) 635
636 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 634.255 kb on + strand at 634.283 kb on + strand at 634.283 kb on + strand at 634.284 kb on - strand at 634.284 kb on - strand at 634.287 kb on + strand at 634.319 kb on - strand at 634.345 kb on + strand at 634.345 kb on + strand at 634.346 kb on - strand at 634.355 kb on - strand at 634.355 kb on - strand at 634.616 kb on + strand at 634.617 kb on - strand at 634.617 kb on - strand at 634.617 kb on - strand at 634.706 kb on - strand at 634.723 kb on + strand at 634.724 kb on - strand at 634.899 kb on - strand at 635.106 kb on + strand at 635.243 kb on - strand, within ABIE40_RS29715 at 635.243 kb on - strand, within ABIE40_RS29715 at 635.269 kb on + strand, within ABIE40_RS29715 at 635.270 kb on - strand, within ABIE40_RS29715 at 635.343 kb on + strand at 635.344 kb on - strand at 635.344 kb on - strand at 635.379 kb on + strand at 635.432 kb on + strand at 635.465 kb on + strand at 635.480 kb on + strand at 635.481 kb on - strand at 635.517 kb on + strand at 635.532 kb on + strand at 635.532 kb on + strand at 635.533 kb on - strand at 635.609 kb on + strand at 635.699 kb on + strand at 635.700 kb on - strand at 635.700 kb on - strand at 635.700 kb on - strand at 635.796 kb on + strand at 635.811 kb on - strand at 635.825 kb on + strand at 635.921 kb on + strand at 635.929 kb on - strand at 635.930 kb on + strand at 635.930 kb on + strand at 635.930 kb on + strand at 635.930 kb on + strand at 635.930 kb on + strand at 635.931 kb on - strand at 635.931 kb on - strand at 635.931 kb on - strand at 635.969 kb on + strand, within ABIE40_RS29720 at 635.970 kb on - strand, within ABIE40_RS29720 at 635.987 kb on + strand, within ABIE40_RS29720 at 635.988 kb on - strand, within ABIE40_RS29720 at 635.988 kb on - strand, within ABIE40_RS29720 at 635.988 kb on - strand, within ABIE40_RS29720 at 636.000 kb on + strand, within ABIE40_RS29720 at 636.000 kb on + strand, within ABIE40_RS29720 at 636.083 kb on + strand, within ABIE40_RS29720 at 636.083 kb on + strand, within ABIE40_RS29720 at 636.083 kb on + strand, within ABIE40_RS29720 at 636.083 kb on + strand, within ABIE40_RS29720 at 636.190 kb on - strand, within ABIE40_RS29720 at 636.273 kb on - strand, within ABIE40_RS29720 at 636.273 kb on - strand, within ABIE40_RS29720
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.3129 mM remove 634,255 + -1.0 634,283 + +0.1 634,283 + -1.0 634,284 - +2.1 634,284 - +0.5 634,287 + -0.5 634,319 - -1.9 634,345 + +0.5 634,345 + +0.5 634,346 - -1.6 634,355 - -2.0 634,355 - -1.8 634,616 + -0.3 634,617 - +0.2 634,617 - +0.3 634,617 - -1.0 634,706 - -1.2 634,723 + +1.1 634,724 - -0.1 634,899 - -0.3 635,106 + +2.1 635,243 - ABIE40_RS29715 0.18 +0.6 635,243 - ABIE40_RS29715 0.18 -1.4 635,269 + ABIE40_RS29715 0.39 -0.3 635,270 - ABIE40_RS29715 0.40 -2.2 635,343 + +2.1 635,344 - +2.1 635,344 - +0.1 635,379 + -0.1 635,432 + -1.9 635,465 + -0.4 635,480 + -1.3 635,481 - +0.4 635,517 + -0.2 635,532 + -0.8 635,532 + -0.3 635,533 - -3.5 635,609 + -0.7 635,699 + -1.3 635,700 - +0.3 635,700 - -1.4 635,700 - -0.7 635,796 + -1.3 635,811 - -0.5 635,825 + +1.1 635,921 + +2.1 635,929 - -2.0 635,930 + -0.9 635,930 + -1.2 635,930 + -1.4 635,930 + -1.3 635,930 + -1.2 635,931 - -0.9 635,931 - -0.7 635,931 - +0.4 635,969 + ABIE40_RS29720 0.11 -1.4 635,970 - ABIE40_RS29720 0.12 -0.1 635,987 + ABIE40_RS29720 0.12 -1.6 635,988 - ABIE40_RS29720 0.12 -1.0 635,988 - ABIE40_RS29720 0.12 +0.6 635,988 - ABIE40_RS29720 0.12 -0.9 636,000 + ABIE40_RS29720 0.13 -0.8 636,000 + ABIE40_RS29720 0.13 +0.8 636,083 + ABIE40_RS29720 0.16 -1.2 636,083 + ABIE40_RS29720 0.16 -2.4 636,083 + ABIE40_RS29720 0.16 +0.5 636,083 + ABIE40_RS29720 0.16 +1.6 636,190 - ABIE40_RS29720 0.21 -1.3 636,273 - ABIE40_RS29720 0.24 +0.6 636,273 - ABIE40_RS29720 0.24 +0.6
Or see this region's nucleotide sequence