Experiment: R2A with 3-octanone 5.3129 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS28910 and ABIE40_RS28915 are separated by 169 nucleotides ABIE40_RS28915 and ABIE40_RS28920 are separated by 37 nucleotides ABIE40_RS28920 and ABIE40_RS28925 are separated by 358 nucleotides
ABIE40_RS28910: ABIE40_RS28910 - PAS domain S-box protein, at 482,649 to 483,734
_RS28910
ABIE40_RS28915: ABIE40_RS28915 - ATPase domain-containing protein, at 483,904 to 485,343
_RS28915
ABIE40_RS28920: ABIE40_RS28920 - response regulator, at 485,381 to 485,746
_RS28920
ABIE40_RS28925: ABIE40_RS28925 - hypothetical protein, at 486,105 to 486,362
_RS28925
Position (kb) 483
484
485
486 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 482.908 kb on + strand, within ABIE40_RS28910 at 482.908 kb on + strand, within ABIE40_RS28910 at 482.909 kb on - strand, within ABIE40_RS28910 at 482.909 kb on - strand, within ABIE40_RS28910 at 482.930 kb on - strand, within ABIE40_RS28910 at 482.930 kb on - strand, within ABIE40_RS28910 at 482.958 kb on + strand, within ABIE40_RS28910 at 482.959 kb on - strand, within ABIE40_RS28910 at 482.959 kb on - strand, within ABIE40_RS28910 at 483.026 kb on - strand, within ABIE40_RS28910 at 483.203 kb on + strand, within ABIE40_RS28910 at 483.203 kb on + strand, within ABIE40_RS28910 at 483.204 kb on - strand, within ABIE40_RS28910 at 483.204 kb on - strand, within ABIE40_RS28910 at 483.327 kb on - strand, within ABIE40_RS28910 at 483.369 kb on + strand, within ABIE40_RS28910 at 483.369 kb on + strand, within ABIE40_RS28910 at 483.369 kb on + strand, within ABIE40_RS28910 at 483.369 kb on + strand, within ABIE40_RS28910 at 483.370 kb on - strand, within ABIE40_RS28910 at 483.370 kb on - strand, within ABIE40_RS28910 at 483.370 kb on - strand, within ABIE40_RS28910 at 483.370 kb on - strand, within ABIE40_RS28910 at 483.392 kb on + strand, within ABIE40_RS28910 at 483.392 kb on + strand, within ABIE40_RS28910 at 483.392 kb on + strand, within ABIE40_RS28910 at 483.393 kb on - strand, within ABIE40_RS28910 at 483.393 kb on - strand, within ABIE40_RS28910 at 483.497 kb on + strand, within ABIE40_RS28910 at 483.498 kb on - strand, within ABIE40_RS28910 at 483.498 kb on - strand, within ABIE40_RS28910 at 483.498 kb on - strand, within ABIE40_RS28910 at 483.498 kb on - strand, within ABIE40_RS28910 at 483.524 kb on + strand, within ABIE40_RS28910 at 483.525 kb on - strand, within ABIE40_RS28910 at 483.525 kb on - strand, within ABIE40_RS28910 at 483.525 kb on - strand, within ABIE40_RS28910 at 483.527 kb on - strand, within ABIE40_RS28910 at 483.617 kb on + strand, within ABIE40_RS28910 at 483.725 kb on + strand at 483.726 kb on - strand at 483.726 kb on - strand at 483.726 kb on - strand at 483.726 kb on - strand at 483.726 kb on - strand at 483.741 kb on + strand at 483.761 kb on + strand at 483.761 kb on + strand at 483.762 kb on - strand at 483.768 kb on + strand at 483.798 kb on + strand at 483.798 kb on + strand at 483.799 kb on - strand at 483.818 kb on + strand at 483.818 kb on + strand at 483.866 kb on - strand at 483.883 kb on + strand at 483.883 kb on + strand at 483.883 kb on + strand at 483.883 kb on + strand at 483.884 kb on - strand at 483.886 kb on + strand at 483.887 kb on - strand at 483.923 kb on + strand at 483.923 kb on + strand at 483.924 kb on - strand at 483.924 kb on - strand at 483.924 kb on - strand at 483.985 kb on + strand at 483.985 kb on + strand at 483.986 kb on - strand at 483.986 kb on - strand at 483.986 kb on - strand at 483.986 kb on - strand at 483.986 kb on - strand at 483.986 kb on - strand at 483.986 kb on - strand at 483.986 kb on - strand at 484.024 kb on + strand at 484.075 kb on + strand, within ABIE40_RS28915 at 484.076 kb on - strand, within ABIE40_RS28915 at 484.076 kb on - strand, within ABIE40_RS28915 at 484.171 kb on + strand, within ABIE40_RS28915 at 484.171 kb on + strand, within ABIE40_RS28915 at 484.171 kb on + strand, within ABIE40_RS28915 at 484.171 kb on + strand, within ABIE40_RS28915 at 484.171 kb on + strand, within ABIE40_RS28915 at 484.172 kb on - strand, within ABIE40_RS28915 at 484.172 kb on - strand, within ABIE40_RS28915 at 484.172 kb on - strand, within ABIE40_RS28915 at 484.172 kb on - strand, within ABIE40_RS28915 at 484.172 kb on - strand, within ABIE40_RS28915 at 484.374 kb on - strand, within ABIE40_RS28915 at 484.439 kb on + strand, within ABIE40_RS28915 at 484.439 kb on + strand, within ABIE40_RS28915 at 484.439 kb on + strand, within ABIE40_RS28915 at 484.439 kb on + strand, within ABIE40_RS28915 at 484.440 kb on - strand, within ABIE40_RS28915 at 484.492 kb on - strand, within ABIE40_RS28915 at 484.526 kb on - strand, within ABIE40_RS28915 at 484.564 kb on + strand, within ABIE40_RS28915 at 484.564 kb on + strand, within ABIE40_RS28915 at 484.564 kb on + strand, within ABIE40_RS28915 at 484.611 kb on + strand, within ABIE40_RS28915 at 484.612 kb on - strand, within ABIE40_RS28915 at 484.632 kb on + strand, within ABIE40_RS28915 at 484.775 kb on + strand, within ABIE40_RS28915 at 484.790 kb on - strand, within ABIE40_RS28915 at 485.048 kb on + strand, within ABIE40_RS28915 at 485.048 kb on + strand, within ABIE40_RS28915 at 485.048 kb on + strand, within ABIE40_RS28915 at 485.049 kb on - strand, within ABIE40_RS28915 at 485.064 kb on + strand, within ABIE40_RS28915 at 485.065 kb on - strand, within ABIE40_RS28915 at 485.065 kb on - strand, within ABIE40_RS28915 at 485.065 kb on - strand, within ABIE40_RS28915 at 485.065 kb on - strand, within ABIE40_RS28915 at 485.171 kb on + strand, within ABIE40_RS28915 at 485.171 kb on + strand, within ABIE40_RS28915 at 485.172 kb on - strand, within ABIE40_RS28915 at 485.172 kb on - strand, within ABIE40_RS28915 at 485.188 kb on + strand, within ABIE40_RS28915 at 485.201 kb on + strand at 485.201 kb on + strand at 485.201 kb on + strand at 485.231 kb on - strand at 485.273 kb on + strand at 485.273 kb on + strand at 485.415 kb on + strand at 485.416 kb on - strand at 485.457 kb on - strand, within ABIE40_RS28920 at 485.528 kb on - strand, within ABIE40_RS28920 at 485.691 kb on - strand, within ABIE40_RS28920 at 485.739 kb on + strand at 485.740 kb on - strand at 485.740 kb on - strand at 485.816 kb on - strand at 485.816 kb on - strand at 485.816 kb on - strand at 485.841 kb on + strand at 485.841 kb on + strand at 485.842 kb on - strand at 485.912 kb on + strand at 486.093 kb on + strand at 486.094 kb on - strand at 486.094 kb on - strand at 486.094 kb on - strand at 486.159 kb on - strand, within ABIE40_RS28925 at 486.183 kb on + strand, within ABIE40_RS28925 at 486.183 kb on + strand, within ABIE40_RS28925 at 486.183 kb on + strand, within ABIE40_RS28925 at 486.183 kb on + strand, within ABIE40_RS28925 at 486.184 kb on - strand, within ABIE40_RS28925 at 486.184 kb on - strand, within ABIE40_RS28925 at 486.184 kb on - strand, within ABIE40_RS28925 at 486.202 kb on + strand, within ABIE40_RS28925 at 486.202 kb on + strand, within ABIE40_RS28925 at 486.203 kb on - strand, within ABIE40_RS28925 at 486.307 kb on + strand, within ABIE40_RS28925 at 486.307 kb on + strand, within ABIE40_RS28925
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.3129 mM remove 482,908 + ABIE40_RS28910 0.24 +0.5 482,908 + ABIE40_RS28910 0.24 +1.1 482,909 - ABIE40_RS28910 0.24 -0.3 482,909 - ABIE40_RS28910 0.24 -0.5 482,930 - ABIE40_RS28910 0.26 -0.1 482,930 - ABIE40_RS28910 0.26 -0.2 482,958 + ABIE40_RS28910 0.28 -0.6 482,959 - ABIE40_RS28910 0.29 +0.9 482,959 - ABIE40_RS28910 0.29 -0.5 483,026 - ABIE40_RS28910 0.35 -0.2 483,203 + ABIE40_RS28910 0.51 +2.1 483,203 + ABIE40_RS28910 0.51 +2.5 483,204 - ABIE40_RS28910 0.51 +0.3 483,204 - ABIE40_RS28910 0.51 +0.1 483,327 - ABIE40_RS28910 0.62 -0.6 483,369 + ABIE40_RS28910 0.66 -2.5 483,369 + ABIE40_RS28910 0.66 -1.5 483,369 + ABIE40_RS28910 0.66 -0.3 483,369 + ABIE40_RS28910 0.66 +2.1 483,370 - ABIE40_RS28910 0.66 -2.1 483,370 - ABIE40_RS28910 0.66 +0.5 483,370 - ABIE40_RS28910 0.66 -1.6 483,370 - ABIE40_RS28910 0.66 +1.1 483,392 + ABIE40_RS28910 0.68 -0.4 483,392 + ABIE40_RS28910 0.68 +0.1 483,392 + ABIE40_RS28910 0.68 +0.9 483,393 - ABIE40_RS28910 0.69 +0.5 483,393 - ABIE40_RS28910 0.69 -0.2 483,497 + ABIE40_RS28910 0.78 -2.2 483,498 - ABIE40_RS28910 0.78 -1.8 483,498 - ABIE40_RS28910 0.78 -0.5 483,498 - ABIE40_RS28910 0.78 +0.3 483,498 - ABIE40_RS28910 0.78 -2.1 483,524 + ABIE40_RS28910 0.81 +2.1 483,525 - ABIE40_RS28910 0.81 +1.5 483,525 - ABIE40_RS28910 0.81 -1.7 483,525 - ABIE40_RS28910 0.81 +1.1 483,527 - ABIE40_RS28910 0.81 +0.1 483,617 + ABIE40_RS28910 0.89 +1.0 483,725 + +0.5 483,726 - +0.3 483,726 - +0.5 483,726 - -2.0 483,726 - -1.8 483,726 - -1.1 483,741 + -1.0 483,761 + -0.1 483,761 + -0.2 483,762 - -0.5 483,768 + -1.2 483,798 + -0.3 483,798 + +0.3 483,799 - -0.8 483,818 + +0.8 483,818 + +0.8 483,866 - -0.1 483,883 + -0.4 483,883 + -0.2 483,883 + -1.3 483,883 + +0.2 483,884 - +3.1 483,886 + +0.2 483,887 - -0.4 483,923 + +0.4 483,923 + -0.2 483,924 - +0.2 483,924 - +0.8 483,924 - -0.1 483,985 + -1.1 483,985 + +0.0 483,986 - -0.3 483,986 - -0.9 483,986 - +0.5 483,986 - +2.5 483,986 - -1.7 483,986 - +0.7 483,986 - +2.1 483,986 - -0.3 484,024 + +2.1 484,075 + ABIE40_RS28915 0.12 -0.3 484,076 - ABIE40_RS28915 0.12 -1.2 484,076 - ABIE40_RS28915 0.12 +0.7 484,171 + ABIE40_RS28915 0.19 -0.9 484,171 + ABIE40_RS28915 0.19 -2.2 484,171 + ABIE40_RS28915 0.19 -1.9 484,171 + ABIE40_RS28915 0.19 -0.8 484,171 + ABIE40_RS28915 0.19 +1.4 484,172 - ABIE40_RS28915 0.19 -2.1 484,172 - ABIE40_RS28915 0.19 -1.1 484,172 - ABIE40_RS28915 0.19 -0.3 484,172 - ABIE40_RS28915 0.19 -1.1 484,172 - ABIE40_RS28915 0.19 -0.0 484,374 - ABIE40_RS28915 0.33 +0.1 484,439 + ABIE40_RS28915 0.37 +0.2 484,439 + ABIE40_RS28915 0.37 -1.2 484,439 + ABIE40_RS28915 0.37 +1.1 484,439 + ABIE40_RS28915 0.37 -0.9 484,440 - ABIE40_RS28915 0.37 -0.8 484,492 - ABIE40_RS28915 0.41 -0.3 484,526 - ABIE40_RS28915 0.43 -1.6 484,564 + ABIE40_RS28915 0.46 -1.3 484,564 + ABIE40_RS28915 0.46 +0.8 484,564 + ABIE40_RS28915 0.46 -0.0 484,611 + ABIE40_RS28915 0.49 -0.7 484,612 - ABIE40_RS28915 0.49 -0.3 484,632 + ABIE40_RS28915 0.51 +2.1 484,775 + ABIE40_RS28915 0.60 +0.5 484,790 - ABIE40_RS28915 0.62 -1.8 485,048 + ABIE40_RS28915 0.79 +2.1 485,048 + ABIE40_RS28915 0.79 -1.0 485,048 + ABIE40_RS28915 0.79 -1.1 485,049 - ABIE40_RS28915 0.80 -0.5 485,064 + ABIE40_RS28915 0.81 -1.8 485,065 - ABIE40_RS28915 0.81 +0.6 485,065 - ABIE40_RS28915 0.81 -2.6 485,065 - ABIE40_RS28915 0.81 -0.9 485,065 - ABIE40_RS28915 0.81 +0.9 485,171 + ABIE40_RS28915 0.88 +0.1 485,171 + ABIE40_RS28915 0.88 -0.3 485,172 - ABIE40_RS28915 0.88 +0.1 485,172 - ABIE40_RS28915 0.88 +2.1 485,188 + ABIE40_RS28915 0.89 +0.5 485,201 + -0.2 485,201 + -0.7 485,201 + -2.7 485,231 - +0.0 485,273 + -1.8 485,273 + +0.5 485,415 + +1.1 485,416 - +1.3 485,457 - ABIE40_RS28920 0.21 -0.8 485,528 - ABIE40_RS28920 0.40 -0.4 485,691 - ABIE40_RS28920 0.85 -1.6 485,739 + -0.7 485,740 - +0.7 485,740 - -1.8 485,816 - +0.1 485,816 - +0.8 485,816 - +0.5 485,841 + -1.3 485,841 + +0.8 485,842 - +0.8 485,912 + -1.7 486,093 + +2.7 486,094 - +2.1 486,094 - +1.3 486,094 - -1.2 486,159 - ABIE40_RS28925 0.21 -0.5 486,183 + ABIE40_RS28925 0.30 -0.7 486,183 + ABIE40_RS28925 0.30 -1.3 486,183 + ABIE40_RS28925 0.30 +2.1 486,183 + ABIE40_RS28925 0.30 -0.5 486,184 - ABIE40_RS28925 0.31 -0.7 486,184 - ABIE40_RS28925 0.31 -0.3 486,184 - ABIE40_RS28925 0.31 -0.9 486,202 + ABIE40_RS28925 0.38 +2.1 486,202 + ABIE40_RS28925 0.38 -1.3 486,203 - ABIE40_RS28925 0.38 +0.9 486,307 + ABIE40_RS28925 0.78 -3.3 486,307 + ABIE40_RS28925 0.78 +2.1
Or see this region's nucleotide sequence