Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS25515

Experiment: R2A with 3-octanone 5.3129 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE40_RS25510 and ABIE40_RS25515 are separated by 83 nucleotidesABIE40_RS25515 and ABIE40_RS25520 overlap by 4 nucleotidesABIE40_RS25520 and ABIE40_RS25525 are separated by 27 nucleotides ABIE40_RS25510: ABIE40_RS25510 - sugar ABC transporter substrate-binding protein, at 1,276,601 to 1,277,839 _RS25510 ABIE40_RS25515: ABIE40_RS25515 - sugar ABC transporter permease, at 1,277,923 to 1,278,840 _RS25515 ABIE40_RS25520: ABIE40_RS25520 - carbohydrate ABC transporter permease, at 1,278,837 to 1,279,700 _RS25520 ABIE40_RS25525: ABIE40_RS25525 - glycoside hydrolase family 127 protein, at 1,279,728 to 1,281,656 _RS25525 Position (kb) 1277 1278 1279Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1276.923 kb on - strand, within ABIE40_RS25510at 1276.964 kb on + strand, within ABIE40_RS25510at 1276.964 kb on + strand, within ABIE40_RS25510at 1276.979 kb on + strand, within ABIE40_RS25510at 1276.979 kb on + strand, within ABIE40_RS25510at 1276.979 kb on + strand, within ABIE40_RS25510at 1276.979 kb on + strand, within ABIE40_RS25510at 1276.979 kb on + strand, within ABIE40_RS25510at 1277.033 kb on + strand, within ABIE40_RS25510at 1277.033 kb on + strand, within ABIE40_RS25510at 1277.033 kb on + strand, within ABIE40_RS25510at 1277.033 kb on + strand, within ABIE40_RS25510at 1277.034 kb on - strand, within ABIE40_RS25510at 1277.129 kb on + strand, within ABIE40_RS25510at 1277.129 kb on + strand, within ABIE40_RS25510at 1277.129 kb on + strand, within ABIE40_RS25510at 1277.130 kb on - strand, within ABIE40_RS25510at 1277.130 kb on - strand, within ABIE40_RS25510at 1277.130 kb on - strand, within ABIE40_RS25510at 1277.130 kb on - strand, within ABIE40_RS25510at 1277.138 kb on + strand, within ABIE40_RS25510at 1277.139 kb on - strand, within ABIE40_RS25510at 1277.213 kb on - strand, within ABIE40_RS25510at 1277.248 kb on + strand, within ABIE40_RS25510at 1277.279 kb on + strand, within ABIE40_RS25510at 1277.279 kb on + strand, within ABIE40_RS25510at 1277.280 kb on - strand, within ABIE40_RS25510at 1277.280 kb on - strand, within ABIE40_RS25510at 1277.280 kb on - strand, within ABIE40_RS25510at 1277.492 kb on - strand, within ABIE40_RS25510at 1277.549 kb on + strand, within ABIE40_RS25510at 1277.549 kb on + strand, within ABIE40_RS25510at 1277.549 kb on + strand, within ABIE40_RS25510at 1277.550 kb on - strand, within ABIE40_RS25510at 1277.550 kb on - strand, within ABIE40_RS25510at 1277.550 kb on - strand, within ABIE40_RS25510at 1277.550 kb on - strand, within ABIE40_RS25510at 1277.551 kb on + strand, within ABIE40_RS25510at 1277.551 kb on + strand, within ABIE40_RS25510at 1277.551 kb on + strand, within ABIE40_RS25510at 1277.551 kb on + strand, within ABIE40_RS25510at 1277.551 kb on + strand, within ABIE40_RS25510at 1277.551 kb on + strand, within ABIE40_RS25510at 1277.551 kb on + strand, within ABIE40_RS25510at 1277.551 kb on + strand, within ABIE40_RS25510at 1277.551 kb on + strand, within ABIE40_RS25510at 1277.552 kb on - strand, within ABIE40_RS25510at 1277.552 kb on - strand, within ABIE40_RS25510at 1277.552 kb on - strand, within ABIE40_RS25510at 1277.552 kb on - strand, within ABIE40_RS25510at 1277.552 kb on - strand, within ABIE40_RS25510at 1277.555 kb on + strand, within ABIE40_RS25510at 1277.555 kb on + strand, within ABIE40_RS25510at 1277.555 kb on + strand, within ABIE40_RS25510at 1277.556 kb on - strand, within ABIE40_RS25510at 1277.588 kb on + strand, within ABIE40_RS25510at 1277.588 kb on + strand, within ABIE40_RS25510at 1277.588 kb on + strand, within ABIE40_RS25510at 1277.589 kb on - strand, within ABIE40_RS25510at 1277.589 kb on - strand, within ABIE40_RS25510at 1277.693 kb on + strand, within ABIE40_RS25510at 1277.695 kb on + strand, within ABIE40_RS25510at 1277.695 kb on + strand, within ABIE40_RS25510at 1277.695 kb on + strand, within ABIE40_RS25510at 1277.695 kb on + strand, within ABIE40_RS25510at 1277.696 kb on - strand, within ABIE40_RS25510at 1277.696 kb on - strand, within ABIE40_RS25510at 1277.837 kb on + strandat 1277.837 kb on + strandat 1277.998 kb on + strandat 1277.998 kb on + strandat 1277.999 kb on - strandat 1277.999 kb on - strandat 1277.999 kb on - strandat 1277.999 kb on - strandat 1277.999 kb on - strandat 1278.075 kb on + strand, within ABIE40_RS25515at 1278.075 kb on + strand, within ABIE40_RS25515at 1278.075 kb on + strand, within ABIE40_RS25515at 1278.121 kb on + strand, within ABIE40_RS25515at 1278.121 kb on + strand, within ABIE40_RS25515at 1278.121 kb on + strand, within ABIE40_RS25515at 1278.121 kb on + strand, within ABIE40_RS25515at 1278.122 kb on - strand, within ABIE40_RS25515at 1278.122 kb on - strand, within ABIE40_RS25515at 1278.122 kb on - strand, within ABIE40_RS25515at 1278.122 kb on - strand, within ABIE40_RS25515at 1278.178 kb on + strand, within ABIE40_RS25515at 1278.178 kb on + strand, within ABIE40_RS25515at 1278.179 kb on - strand, within ABIE40_RS25515at 1278.179 kb on - strand, within ABIE40_RS25515at 1278.179 kb on - strand, within ABIE40_RS25515at 1278.265 kb on + strand, within ABIE40_RS25515at 1278.265 kb on + strand, within ABIE40_RS25515at 1278.265 kb on + strand, within ABIE40_RS25515at 1278.266 kb on - strand, within ABIE40_RS25515at 1278.266 kb on - strand, within ABIE40_RS25515at 1278.266 kb on - strand, within ABIE40_RS25515at 1278.403 kb on - strand, within ABIE40_RS25515at 1278.655 kb on + strand, within ABIE40_RS25515at 1278.655 kb on + strand, within ABIE40_RS25515at 1278.656 kb on - strand, within ABIE40_RS25515at 1278.703 kb on + strand, within ABIE40_RS25515at 1278.703 kb on + strand, within ABIE40_RS25515at 1278.703 kb on + strand, within ABIE40_RS25515at 1278.703 kb on + strand, within ABIE40_RS25515at 1278.704 kb on - strand, within ABIE40_RS25515at 1278.704 kb on - strand, within ABIE40_RS25515at 1278.704 kb on - strand, within ABIE40_RS25515at 1278.706 kb on + strand, within ABIE40_RS25515at 1278.706 kb on + strand, within ABIE40_RS25515at 1278.706 kb on + strand, within ABIE40_RS25515at 1278.706 kb on + strand, within ABIE40_RS25515at 1278.706 kb on + strand, within ABIE40_RS25515at 1278.707 kb on + strand, within ABIE40_RS25515at 1278.707 kb on - strand, within ABIE40_RS25515at 1278.707 kb on - strand, within ABIE40_RS25515at 1278.707 kb on - strand, within ABIE40_RS25515at 1278.707 kb on - strand, within ABIE40_RS25515at 1278.746 kb on - strand, within ABIE40_RS25515at 1278.818 kb on - strandat 1278.891 kb on + strandat 1278.892 kb on - strandat 1279.032 kb on + strand, within ABIE40_RS25520at 1279.032 kb on + strand, within ABIE40_RS25520at 1279.032 kb on + strand, within ABIE40_RS25520at 1279.032 kb on + strand, within ABIE40_RS25520at 1279.032 kb on + strand, within ABIE40_RS25520at 1279.032 kb on + strand, within ABIE40_RS25520at 1279.032 kb on + strand, within ABIE40_RS25520at 1279.033 kb on - strand, within ABIE40_RS25520at 1279.033 kb on - strand, within ABIE40_RS25520at 1279.033 kb on - strand, within ABIE40_RS25520at 1279.047 kb on - strand, within ABIE40_RS25520at 1279.047 kb on - strand, within ABIE40_RS25520at 1279.299 kb on + strand, within ABIE40_RS25520at 1279.299 kb on + strand, within ABIE40_RS25520at 1279.299 kb on + strand, within ABIE40_RS25520at 1279.533 kb on + strand, within ABIE40_RS25520at 1279.533 kb on + strand, within ABIE40_RS25520at 1279.533 kb on + strand, within ABIE40_RS25520at 1279.533 kb on + strand, within ABIE40_RS25520at 1279.534 kb on - strand, within ABIE40_RS25520at 1279.534 kb on - strand, within ABIE40_RS25520at 1279.534 kb on - strand, within ABIE40_RS25520at 1279.662 kb on + strandat 1279.662 kb on + strandat 1279.662 kb on + strandat 1279.663 kb on - strandat 1279.665 kb on + strandat 1279.665 kb on + strandat 1279.665 kb on + strandat 1279.665 kb on + strandat 1279.666 kb on - strandat 1279.666 kb on - strandat 1279.666 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.3129 mM
remove
1,276,923 - ABIE40_RS25510 0.26 -1.6
1,276,964 + ABIE40_RS25510 0.29 -0.7
1,276,964 + ABIE40_RS25510 0.29 +0.3
1,276,979 + ABIE40_RS25510 0.31 -1.0
1,276,979 + ABIE40_RS25510 0.31 +1.1
1,276,979 + ABIE40_RS25510 0.31 -1.2
1,276,979 + ABIE40_RS25510 0.31 +0.5
1,276,979 + ABIE40_RS25510 0.31 -1.8
1,277,033 + ABIE40_RS25510 0.35 -1.7
1,277,033 + ABIE40_RS25510 0.35 -0.1
1,277,033 + ABIE40_RS25510 0.35 +0.0
1,277,033 + ABIE40_RS25510 0.35 -0.1
1,277,034 - ABIE40_RS25510 0.35 -0.8
1,277,129 + ABIE40_RS25510 0.43 -0.1
1,277,129 + ABIE40_RS25510 0.43 +0.7
1,277,129 + ABIE40_RS25510 0.43 -1.1
1,277,130 - ABIE40_RS25510 0.43 +0.4
1,277,130 - ABIE40_RS25510 0.43 -0.5
1,277,130 - ABIE40_RS25510 0.43 -2.3
1,277,130 - ABIE40_RS25510 0.43 +0.3
1,277,138 + ABIE40_RS25510 0.43 -0.2
1,277,139 - ABIE40_RS25510 0.43 -1.2
1,277,213 - ABIE40_RS25510 0.49 -1.8
1,277,248 + ABIE40_RS25510 0.52 -0.3
1,277,279 + ABIE40_RS25510 0.55 +0.1
1,277,279 + ABIE40_RS25510 0.55 -0.3
1,277,280 - ABIE40_RS25510 0.55 -0.2
1,277,280 - ABIE40_RS25510 0.55 +0.3
1,277,280 - ABIE40_RS25510 0.55 +0.2
1,277,492 - ABIE40_RS25510 0.72 -1.2
1,277,549 + ABIE40_RS25510 0.77 -0.6
1,277,549 + ABIE40_RS25510 0.77 -2.0
1,277,549 + ABIE40_RS25510 0.77 +0.5
1,277,550 - ABIE40_RS25510 0.77 -1.9
1,277,550 - ABIE40_RS25510 0.77 -0.3
1,277,550 - ABIE40_RS25510 0.77 +1.3
1,277,550 - ABIE40_RS25510 0.77 +1.6
1,277,551 + ABIE40_RS25510 0.77 -0.9
1,277,551 + ABIE40_RS25510 0.77 +1.1
1,277,551 + ABIE40_RS25510 0.77 +0.2
1,277,551 + ABIE40_RS25510 0.77 +2.3
1,277,551 + ABIE40_RS25510 0.77 +0.3
1,277,551 + ABIE40_RS25510 0.77 -1.6
1,277,551 + ABIE40_RS25510 0.77 -0.3
1,277,551 + ABIE40_RS25510 0.77 -2.4
1,277,551 + ABIE40_RS25510 0.77 -0.7
1,277,552 - ABIE40_RS25510 0.77 +0.7
1,277,552 - ABIE40_RS25510 0.77 -0.6
1,277,552 - ABIE40_RS25510 0.77 -2.1
1,277,552 - ABIE40_RS25510 0.77 +2.7
1,277,552 - ABIE40_RS25510 0.77 -0.5
1,277,555 + ABIE40_RS25510 0.77 +0.7
1,277,555 + ABIE40_RS25510 0.77 -0.5
1,277,555 + ABIE40_RS25510 0.77 -0.2
1,277,556 - ABIE40_RS25510 0.77 +0.6
1,277,588 + ABIE40_RS25510 0.80 +0.1
1,277,588 + ABIE40_RS25510 0.80 +1.4
1,277,588 + ABIE40_RS25510 0.80 +1.4
1,277,589 - ABIE40_RS25510 0.80 +0.2
1,277,589 - ABIE40_RS25510 0.80 +1.5
1,277,693 + ABIE40_RS25510 0.88 -0.7
1,277,695 + ABIE40_RS25510 0.88 -0.4
1,277,695 + ABIE40_RS25510 0.88 -0.0
1,277,695 + ABIE40_RS25510 0.88 +0.2
1,277,695 + ABIE40_RS25510 0.88 +1.3
1,277,696 - ABIE40_RS25510 0.88 +0.5
1,277,696 - ABIE40_RS25510 0.88 -2.1
1,277,837 + +0.5
1,277,837 + -0.9
1,277,998 + +0.1
1,277,998 + +0.3
1,277,999 - +1.0
1,277,999 - +0.0
1,277,999 - +2.1
1,277,999 - -0.2
1,277,999 - -0.7
1,278,075 + ABIE40_RS25515 0.17 -1.7
1,278,075 + ABIE40_RS25515 0.17 +1.1
1,278,075 + ABIE40_RS25515 0.17 -0.7
1,278,121 + ABIE40_RS25515 0.22 -0.9
1,278,121 + ABIE40_RS25515 0.22 -2.8
1,278,121 + ABIE40_RS25515 0.22 -3.0
1,278,121 + ABIE40_RS25515 0.22 -1.7
1,278,122 - ABIE40_RS25515 0.22 -2.7
1,278,122 - ABIE40_RS25515 0.22 +0.2
1,278,122 - ABIE40_RS25515 0.22 -0.4
1,278,122 - ABIE40_RS25515 0.22 -0.2
1,278,178 + ABIE40_RS25515 0.28 -0.2
1,278,178 + ABIE40_RS25515 0.28 -2.1
1,278,179 - ABIE40_RS25515 0.28 -1.2
1,278,179 - ABIE40_RS25515 0.28 -0.2
1,278,179 - ABIE40_RS25515 0.28 +0.0
1,278,265 + ABIE40_RS25515 0.37 +2.1
1,278,265 + ABIE40_RS25515 0.37 -1.1
1,278,265 + ABIE40_RS25515 0.37 -1.4
1,278,266 - ABIE40_RS25515 0.37 -0.9
1,278,266 - ABIE40_RS25515 0.37 -0.3
1,278,266 - ABIE40_RS25515 0.37 -0.7
1,278,403 - ABIE40_RS25515 0.52 -0.0
1,278,655 + ABIE40_RS25515 0.80 -1.4
1,278,655 + ABIE40_RS25515 0.80 -1.1
1,278,656 - ABIE40_RS25515 0.80 -1.0
1,278,703 + ABIE40_RS25515 0.85 +1.1
1,278,703 + ABIE40_RS25515 0.85 -0.2
1,278,703 + ABIE40_RS25515 0.85 -0.5
1,278,703 + ABIE40_RS25515 0.85 +0.5
1,278,704 - ABIE40_RS25515 0.85 -2.0
1,278,704 - ABIE40_RS25515 0.85 -2.1
1,278,704 - ABIE40_RS25515 0.85 -2.3
1,278,706 + ABIE40_RS25515 0.85 +0.1
1,278,706 + ABIE40_RS25515 0.85 -0.2
1,278,706 + ABIE40_RS25515 0.85 +0.2
1,278,706 + ABIE40_RS25515 0.85 +0.1
1,278,706 + ABIE40_RS25515 0.85 -0.5
1,278,707 + ABIE40_RS25515 0.85 +0.5
1,278,707 - ABIE40_RS25515 0.85 -2.6
1,278,707 - ABIE40_RS25515 0.85 +1.2
1,278,707 - ABIE40_RS25515 0.85 -1.9
1,278,707 - ABIE40_RS25515 0.85 -0.3
1,278,746 - ABIE40_RS25515 0.90 +0.1
1,278,818 - -0.0
1,278,891 + -0.4
1,278,892 - -0.8
1,279,032 + ABIE40_RS25520 0.23 +0.4
1,279,032 + ABIE40_RS25520 0.23 -0.8
1,279,032 + ABIE40_RS25520 0.23 -0.1
1,279,032 + ABIE40_RS25520 0.23 -0.9
1,279,032 + ABIE40_RS25520 0.23 +0.8
1,279,032 + ABIE40_RS25520 0.23 -1.3
1,279,032 + ABIE40_RS25520 0.23 +0.0
1,279,033 - ABIE40_RS25520 0.23 -1.5
1,279,033 - ABIE40_RS25520 0.23 -0.0
1,279,033 - ABIE40_RS25520 0.23 -0.1
1,279,047 - ABIE40_RS25520 0.24 +0.5
1,279,047 - ABIE40_RS25520 0.24 +0.6
1,279,299 + ABIE40_RS25520 0.53 +0.2
1,279,299 + ABIE40_RS25520 0.53 -0.2
1,279,299 + ABIE40_RS25520 0.53 +0.2
1,279,533 + ABIE40_RS25520 0.81 -0.8
1,279,533 + ABIE40_RS25520 0.81 +1.2
1,279,533 + ABIE40_RS25520 0.81 -0.6
1,279,533 + ABIE40_RS25520 0.81 +1.4
1,279,534 - ABIE40_RS25520 0.81 -0.2
1,279,534 - ABIE40_RS25520 0.81 -0.7
1,279,534 - ABIE40_RS25520 0.81 -2.4
1,279,662 + -0.5
1,279,662 + -0.7
1,279,662 + +1.5
1,279,663 - +1.5
1,279,665 + +0.5
1,279,665 + +1.1
1,279,665 + -0.3
1,279,665 + -1.5
1,279,666 - -1.1
1,279,666 - -0.9
1,279,666 - -1.2

Or see this region's nucleotide sequence