Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS25415

Experiment: R2A with 3-octanone 5.3129 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE40_RS25410 and ABIE40_RS25415 are separated by 33 nucleotidesABIE40_RS25415 and ABIE40_RS25420 are separated by 6 nucleotides ABIE40_RS25410: ABIE40_RS25410 - MFS transporter, at 1,255,213 to 1,256,397 _RS25410 ABIE40_RS25415: ABIE40_RS25415 - hypothetical protein, at 1,256,431 to 1,257,192 _RS25415 ABIE40_RS25420: ABIE40_RS25420 - sulfonate ABC transporter substrate-binding protein, at 1,257,199 to 1,258,155 _RS25420 Position (kb) 1256 1257 1258Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1255.752 kb on + strand, within ABIE40_RS25410at 1255.752 kb on + strand, within ABIE40_RS25410at 1255.753 kb on - strand, within ABIE40_RS25410at 1255.860 kb on + strand, within ABIE40_RS25410at 1255.860 kb on + strand, within ABIE40_RS25410at 1255.861 kb on - strand, within ABIE40_RS25410at 1255.867 kb on + strand, within ABIE40_RS25410at 1255.867 kb on + strand, within ABIE40_RS25410at 1255.867 kb on + strand, within ABIE40_RS25410at 1255.867 kb on + strand, within ABIE40_RS25410at 1255.867 kb on + strand, within ABIE40_RS25410at 1255.867 kb on + strand, within ABIE40_RS25410at 1255.867 kb on + strand, within ABIE40_RS25410at 1255.867 kb on + strand, within ABIE40_RS25410at 1255.867 kb on + strand, within ABIE40_RS25410at 1255.867 kb on + strand, within ABIE40_RS25410at 1255.868 kb on - strand, within ABIE40_RS25410at 1255.868 kb on - strand, within ABIE40_RS25410at 1255.868 kb on - strand, within ABIE40_RS25410at 1255.868 kb on - strand, within ABIE40_RS25410at 1255.868 kb on - strand, within ABIE40_RS25410at 1255.868 kb on - strand, within ABIE40_RS25410at 1255.868 kb on - strand, within ABIE40_RS25410at 1255.873 kb on + strand, within ABIE40_RS25410at 1255.874 kb on - strand, within ABIE40_RS25410at 1255.874 kb on - strand, within ABIE40_RS25410at 1255.874 kb on - strand, within ABIE40_RS25410at 1255.874 kb on - strand, within ABIE40_RS25410at 1255.874 kb on - strand, within ABIE40_RS25410at 1255.874 kb on - strand, within ABIE40_RS25410at 1256.032 kb on - strand, within ABIE40_RS25410at 1256.105 kb on + strand, within ABIE40_RS25410at 1256.414 kb on + strandat 1256.647 kb on + strand, within ABIE40_RS25415at 1256.647 kb on + strand, within ABIE40_RS25415at 1256.647 kb on + strand, within ABIE40_RS25415at 1256.647 kb on + strand, within ABIE40_RS25415at 1256.647 kb on + strand, within ABIE40_RS25415at 1256.647 kb on + strand, within ABIE40_RS25415at 1256.647 kb on + strand, within ABIE40_RS25415at 1256.647 kb on + strand, within ABIE40_RS25415at 1256.647 kb on + strand, within ABIE40_RS25415at 1256.648 kb on - strand, within ABIE40_RS25415at 1256.648 kb on - strand, within ABIE40_RS25415at 1256.648 kb on - strand, within ABIE40_RS25415at 1256.648 kb on - strand, within ABIE40_RS25415at 1256.648 kb on - strand, within ABIE40_RS25415at 1256.761 kb on + strand, within ABIE40_RS25415at 1256.761 kb on + strand, within ABIE40_RS25415at 1256.773 kb on + strand, within ABIE40_RS25415at 1256.788 kb on + strand, within ABIE40_RS25415at 1256.788 kb on + strand, within ABIE40_RS25415at 1256.835 kb on - strand, within ABIE40_RS25415at 1256.880 kb on - strand, within ABIE40_RS25415at 1256.880 kb on - strand, within ABIE40_RS25415at 1256.902 kb on + strand, within ABIE40_RS25415at 1256.902 kb on + strand, within ABIE40_RS25415at 1256.902 kb on + strand, within ABIE40_RS25415at 1256.903 kb on - strand, within ABIE40_RS25415at 1256.903 kb on - strand, within ABIE40_RS25415at 1256.903 kb on - strand, within ABIE40_RS25415at 1256.903 kb on - strand, within ABIE40_RS25415at 1256.903 kb on - strand, within ABIE40_RS25415at 1256.903 kb on - strand, within ABIE40_RS25415at 1256.903 kb on - strand, within ABIE40_RS25415at 1256.932 kb on + strand, within ABIE40_RS25415at 1256.933 kb on - strand, within ABIE40_RS25415at 1256.969 kb on - strand, within ABIE40_RS25415at 1256.969 kb on - strand, within ABIE40_RS25415at 1256.969 kb on - strand, within ABIE40_RS25415at 1256.969 kb on - strand, within ABIE40_RS25415at 1257.007 kb on + strand, within ABIE40_RS25415at 1257.008 kb on - strand, within ABIE40_RS25415at 1257.013 kb on + strand, within ABIE40_RS25415at 1257.013 kb on + strand, within ABIE40_RS25415at 1257.013 kb on + strand, within ABIE40_RS25415at 1257.013 kb on + strand, within ABIE40_RS25415at 1257.013 kb on + strand, within ABIE40_RS25415at 1257.014 kb on - strand, within ABIE40_RS25415at 1257.014 kb on - strand, within ABIE40_RS25415at 1257.014 kb on - strand, within ABIE40_RS25415at 1257.014 kb on - strand, within ABIE40_RS25415at 1257.064 kb on + strand, within ABIE40_RS25415at 1257.064 kb on + strand, within ABIE40_RS25415at 1257.064 kb on + strand, within ABIE40_RS25415at 1257.065 kb on - strand, within ABIE40_RS25415at 1257.065 kb on - strand, within ABIE40_RS25415at 1257.065 kb on - strand, within ABIE40_RS25415at 1257.190 kb on + strandat 1257.191 kb on - strandat 1257.191 kb on - strandat 1257.326 kb on + strand, within ABIE40_RS25420at 1257.456 kb on + strand, within ABIE40_RS25420at 1257.504 kb on - strand, within ABIE40_RS25420at 1257.504 kb on - strand, within ABIE40_RS25420at 1257.567 kb on - strand, within ABIE40_RS25420at 1257.674 kb on + strand, within ABIE40_RS25420at 1257.674 kb on + strand, within ABIE40_RS25420at 1257.674 kb on + strand, within ABIE40_RS25420at 1257.674 kb on + strand, within ABIE40_RS25420at 1257.674 kb on + strand, within ABIE40_RS25420at 1257.675 kb on - strand, within ABIE40_RS25420at 1257.675 kb on - strand, within ABIE40_RS25420at 1257.713 kb on + strand, within ABIE40_RS25420at 1257.713 kb on + strand, within ABIE40_RS25420at 1257.713 kb on + strand, within ABIE40_RS25420at 1257.714 kb on - strand, within ABIE40_RS25420at 1257.714 kb on - strand, within ABIE40_RS25420at 1257.839 kb on + strand, within ABIE40_RS25420at 1257.839 kb on + strand, within ABIE40_RS25420at 1257.840 kb on - strand, within ABIE40_RS25420at 1257.840 kb on - strand, within ABIE40_RS25420at 1258.132 kb on - strandat 1258.132 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.3129 mM
remove
1,255,752 + ABIE40_RS25410 0.45 -0.5
1,255,752 + ABIE40_RS25410 0.45 +0.1
1,255,753 - ABIE40_RS25410 0.46 -0.2
1,255,860 + ABIE40_RS25410 0.55 -0.9
1,255,860 + ABIE40_RS25410 0.55 +0.9
1,255,861 - ABIE40_RS25410 0.55 -1.3
1,255,867 + ABIE40_RS25410 0.55 -0.4
1,255,867 + ABIE40_RS25410 0.55 +0.3
1,255,867 + ABIE40_RS25410 0.55 +0.2
1,255,867 + ABIE40_RS25410 0.55 +2.1
1,255,867 + ABIE40_RS25410 0.55 -0.1
1,255,867 + ABIE40_RS25410 0.55 +0.6
1,255,867 + ABIE40_RS25410 0.55 -1.5
1,255,867 + ABIE40_RS25410 0.55 -1.5
1,255,867 + ABIE40_RS25410 0.55 -0.5
1,255,867 + ABIE40_RS25410 0.55 +0.1
1,255,868 - ABIE40_RS25410 0.55 +0.5
1,255,868 - ABIE40_RS25410 0.55 -2.7
1,255,868 - ABIE40_RS25410 0.55 +0.1
1,255,868 - ABIE40_RS25410 0.55 +2.1
1,255,868 - ABIE40_RS25410 0.55 -1.6
1,255,868 - ABIE40_RS25410 0.55 -0.9
1,255,868 - ABIE40_RS25410 0.55 +0.2
1,255,873 + ABIE40_RS25410 0.56 +0.4
1,255,874 - ABIE40_RS25410 0.56 -0.3
1,255,874 - ABIE40_RS25410 0.56 +0.3
1,255,874 - ABIE40_RS25410 0.56 +1.4
1,255,874 - ABIE40_RS25410 0.56 -1.0
1,255,874 - ABIE40_RS25410 0.56 +0.3
1,255,874 - ABIE40_RS25410 0.56 +2.4
1,256,032 - ABIE40_RS25410 0.69 -1.5
1,256,105 + ABIE40_RS25410 0.75 +0.1
1,256,414 + +0.8
1,256,647 + ABIE40_RS25415 0.28 +0.2
1,256,647 + ABIE40_RS25415 0.28 +1.1
1,256,647 + ABIE40_RS25415 0.28 -1.9
1,256,647 + ABIE40_RS25415 0.28 +1.6
1,256,647 + ABIE40_RS25415 0.28 -1.7
1,256,647 + ABIE40_RS25415 0.28 -3.1
1,256,647 + ABIE40_RS25415 0.28 +0.2
1,256,647 + ABIE40_RS25415 0.28 -0.2
1,256,647 + ABIE40_RS25415 0.28 -0.3
1,256,648 - ABIE40_RS25415 0.28 +0.3
1,256,648 - ABIE40_RS25415 0.28 -0.3
1,256,648 - ABIE40_RS25415 0.28 +0.5
1,256,648 - ABIE40_RS25415 0.28 -0.1
1,256,648 - ABIE40_RS25415 0.28 +0.7
1,256,761 + ABIE40_RS25415 0.43 -0.5
1,256,761 + ABIE40_RS25415 0.43 -1.3
1,256,773 + ABIE40_RS25415 0.45 +0.3
1,256,788 + ABIE40_RS25415 0.47 -1.3
1,256,788 + ABIE40_RS25415 0.47 -1.3
1,256,835 - ABIE40_RS25415 0.53 -0.2
1,256,880 - ABIE40_RS25415 0.59 -0.5
1,256,880 - ABIE40_RS25415 0.59 -1.4
1,256,902 + ABIE40_RS25415 0.62 -0.6
1,256,902 + ABIE40_RS25415 0.62 +1.1
1,256,902 + ABIE40_RS25415 0.62 +0.7
1,256,903 - ABIE40_RS25415 0.62 -0.5
1,256,903 - ABIE40_RS25415 0.62 +0.8
1,256,903 - ABIE40_RS25415 0.62 -1.3
1,256,903 - ABIE40_RS25415 0.62 -0.3
1,256,903 - ABIE40_RS25415 0.62 -0.9
1,256,903 - ABIE40_RS25415 0.62 +2.1
1,256,903 - ABIE40_RS25415 0.62 +0.2
1,256,932 + ABIE40_RS25415 0.66 -0.3
1,256,933 - ABIE40_RS25415 0.66 -0.5
1,256,969 - ABIE40_RS25415 0.71 -0.3
1,256,969 - ABIE40_RS25415 0.71 +0.3
1,256,969 - ABIE40_RS25415 0.71 -1.1
1,256,969 - ABIE40_RS25415 0.71 -1.9
1,257,007 + ABIE40_RS25415 0.76 -2.8
1,257,008 - ABIE40_RS25415 0.76 -0.3
1,257,013 + ABIE40_RS25415 0.76 +0.0
1,257,013 + ABIE40_RS25415 0.76 +0.2
1,257,013 + ABIE40_RS25415 0.76 -0.0
1,257,013 + ABIE40_RS25415 0.76 +0.4
1,257,013 + ABIE40_RS25415 0.76 -2.0
1,257,014 - ABIE40_RS25415 0.77 +0.7
1,257,014 - ABIE40_RS25415 0.77 +0.5
1,257,014 - ABIE40_RS25415 0.77 -0.1
1,257,014 - ABIE40_RS25415 0.77 -0.8
1,257,064 + ABIE40_RS25415 0.83 -2.7
1,257,064 + ABIE40_RS25415 0.83 -1.7
1,257,064 + ABIE40_RS25415 0.83 -1.3
1,257,065 - ABIE40_RS25415 0.83 +0.3
1,257,065 - ABIE40_RS25415 0.83 +0.3
1,257,065 - ABIE40_RS25415 0.83 -1.2
1,257,190 + +2.1
1,257,191 - -1.6
1,257,191 - -0.9
1,257,326 + ABIE40_RS25420 0.13 +0.4
1,257,456 + ABIE40_RS25420 0.27 +0.1
1,257,504 - ABIE40_RS25420 0.32 -0.1
1,257,504 - ABIE40_RS25420 0.32 +1.1
1,257,567 - ABIE40_RS25420 0.38 -2.5
1,257,674 + ABIE40_RS25420 0.50 -2.3
1,257,674 + ABIE40_RS25420 0.50 -1.1
1,257,674 + ABIE40_RS25420 0.50 -1.8
1,257,674 + ABIE40_RS25420 0.50 -1.4
1,257,674 + ABIE40_RS25420 0.50 +2.4
1,257,675 - ABIE40_RS25420 0.50 +0.8
1,257,675 - ABIE40_RS25420 0.50 -0.5
1,257,713 + ABIE40_RS25420 0.54 -1.4
1,257,713 + ABIE40_RS25420 0.54 +1.2
1,257,713 + ABIE40_RS25420 0.54 +0.1
1,257,714 - ABIE40_RS25420 0.54 -0.3
1,257,714 - ABIE40_RS25420 0.54 +1.8
1,257,839 + ABIE40_RS25420 0.67 +1.0
1,257,839 + ABIE40_RS25420 0.67 -0.2
1,257,840 - ABIE40_RS25420 0.67 +1.1
1,257,840 - ABIE40_RS25420 0.67 +0.1
1,258,132 - +0.5
1,258,132 - -1.9

Or see this region's nucleotide sequence