Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS25155

Experiment: R2A with 3-octanone 5.3129 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with 3-octanone 5.3129 mM
1,198,476	+				+1.4
1,198,598	+		ABIE40_RS25150	0.10	-2.9
1,198,598	+		ABIE40_RS25150	0.10	-0.5
1,198,598	+		ABIE40_RS25150	0.10	-0.9
1,198,598	+		ABIE40_RS25150	0.10	-0.1
1,198,598	+		ABIE40_RS25150	0.10	-0.9
1,198,599	-		ABIE40_RS25150	0.10	-1.1
1,198,599	-		ABIE40_RS25150	0.10	-0.1
1,198,599	-		ABIE40_RS25150	0.10	-1.2
1,198,599	-		ABIE40_RS25150	0.10	-1.7
1,198,599	-		ABIE40_RS25150	0.10	+0.2
1,198,643	+		ABIE40_RS25150	0.15	-0.4
1,198,644	-		ABIE40_RS25150	0.15	-0.1
1,198,644	-		ABIE40_RS25150	0.15	+1.7
1,198,644	-		ABIE40_RS25150	0.15	-2.0
1,198,865	+		ABIE40_RS25150	0.39	-1.1
1,198,866	-		ABIE40_RS25150	0.39	-1.4
1,198,866	-		ABIE40_RS25150	0.39	-0.9
1,198,923	+		ABIE40_RS25150	0.45	-1.2
1,198,923	+		ABIE40_RS25150	0.45	+2.1
1,198,923	+		ABIE40_RS25150	0.45	-2.2
1,198,923	+		ABIE40_RS25150	0.45	+2.1
1,198,924	-		ABIE40_RS25150	0.45	-1.1
1,198,924	-		ABIE40_RS25150	0.45	+0.9
1,198,924	-		ABIE40_RS25150	0.45	-0.1
1,198,924	-		ABIE40_RS25150	0.45	+0.6
1,198,924	-		ABIE40_RS25150	0.45	-0.6
1,198,924	-		ABIE40_RS25150	0.45	+0.1
1,198,924	-		ABIE40_RS25150	0.45	-1.5
1,198,924	-		ABIE40_RS25150	0.45	-1.7
1,198,924	-		ABIE40_RS25150	0.45	+0.8
1,198,925	+		ABIE40_RS25150	0.45	-0.8
1,198,925	+		ABIE40_RS25150	0.45	-0.8
1,198,925	+		ABIE40_RS25150	0.45	-0.3
1,198,925	+		ABIE40_RS25150	0.45	+0.3
1,198,925	+		ABIE40_RS25150	0.45	-2.5
1,198,925	+		ABIE40_RS25150	0.45	-2.1
1,198,925	+		ABIE40_RS25150	0.45	+1.1
1,198,926	-		ABIE40_RS25150	0.45	-0.6
1,198,926	-		ABIE40_RS25150	0.45	+1.5
1,198,926	-		ABIE40_RS25150	0.45	+0.5
1,198,926	-		ABIE40_RS25150	0.45	-0.2
1,198,926	-		ABIE40_RS25150	0.45	-3.1
1,199,017	+		ABIE40_RS25150	0.55	-0.9
1,199,018	-		ABIE40_RS25150	0.55	+0.9
1,199,018	-		ABIE40_RS25150	0.55	+1.0
1,199,034	+		ABIE40_RS25150	0.57	-0.4
1,199,129	+		ABIE40_RS25150	0.67	+0.0
1,199,129	+		ABIE40_RS25150	0.67	-2.7
1,199,130	-		ABIE40_RS25150	0.67	-0.5
1,199,144	+		ABIE40_RS25150	0.68	+1.6
1,199,144	+		ABIE40_RS25150	0.68	+0.2
1,199,144	+		ABIE40_RS25150	0.68	-0.3
1,199,145	-		ABIE40_RS25150	0.68	-0.6
1,199,145	-		ABIE40_RS25150	0.68	-0.0
1,199,226	+		ABIE40_RS25150	0.77	+0.3
1,199,226	+		ABIE40_RS25150	0.77	-1.2
1,199,227	-		ABIE40_RS25150	0.77	-0.9
1,199,227	-		ABIE40_RS25150	0.77	+1.1
1,199,301	+		ABIE40_RS25150	0.85	-0.8
1,199,302	-		ABIE40_RS25150	0.85	+1.5
1,199,303	+		ABIE40_RS25150	0.85	+0.0
1,199,303	+		ABIE40_RS25150	0.85	+0.6
1,199,304	-		ABIE40_RS25150	0.85	-2.2
1,199,349	-				+1.4
1,199,349	-				-0.2
1,199,370	+				+0.8
1,199,422	-				+0.6
1,199,422	-				+0.1
1,199,422	-				-2.8
1,199,422	-				-2.0
1,199,432	-				-1.2
1,199,539	+				-0.2
1,199,676	+		ABIE40_RS25155	0.21	+1.5
1,199,721	+		ABIE40_RS25155	0.25	-1.6
1,199,721	+		ABIE40_RS25155	0.25	+0.8
1,199,721	+		ABIE40_RS25155	0.25	-0.6
1,199,721	+		ABIE40_RS25155	0.25	-2.5
1,199,721	+		ABIE40_RS25155	0.25	-0.2
1,199,722	-		ABIE40_RS25155	0.25	-0.2
1,199,722	-		ABIE40_RS25155	0.25	-0.9
1,199,722	-		ABIE40_RS25155	0.25	-0.7
1,199,722	-		ABIE40_RS25155	0.25	-0.9
1,199,722	-		ABIE40_RS25155	0.25	-0.5
1,199,722	-		ABIE40_RS25155	0.25	-2.9
1,199,722	-		ABIE40_RS25155	0.25	-3.4
1,199,722	-		ABIE40_RS25155	0.25	+0.0
1,199,730	-		ABIE40_RS25155	0.26	-0.6
1,199,763	+		ABIE40_RS25155	0.29	-1.3
1,199,763	+		ABIE40_RS25155	0.29	-1.3
1,199,881	+		ABIE40_RS25155	0.40	+1.5
1,199,923	-		ABIE40_RS25155	0.44	+0.0
1,199,958	+		ABIE40_RS25155	0.47	-1.1
1,199,992	+		ABIE40_RS25155	0.50	+0.5
1,199,992	+		ABIE40_RS25155	0.50	+0.1
1,199,992	+		ABIE40_RS25155	0.50	+0.5
1,199,993	-		ABIE40_RS25155	0.50	-1.7
1,199,993	-		ABIE40_RS25155	0.50	-1.0
1,199,994	+		ABIE40_RS25155	0.50	-1.4
1,199,994	+		ABIE40_RS25155	0.50	-2.7
1,199,994	+		ABIE40_RS25155	0.50	-1.6
1,199,994	+		ABIE40_RS25155	0.50	+1.1
1,199,994	+		ABIE40_RS25155	0.50	-0.9
1,199,994	+		ABIE40_RS25155	0.50	-3.1
1,199,994	+		ABIE40_RS25155	0.50	-0.6
1,199,994	+		ABIE40_RS25155	0.50	-2.5
1,199,994	+		ABIE40_RS25155	0.50	-0.9
1,199,994	+		ABIE40_RS25155	0.50	-2.9
1,199,994	+		ABIE40_RS25155	0.50	-1.0
1,199,994	+		ABIE40_RS25155	0.50	+1.1
1,199,994	+		ABIE40_RS25155	0.50	-0.9
1,199,995	-		ABIE40_RS25155	0.50	-0.7
1,199,995	-		ABIE40_RS25155	0.50	-2.4
1,199,995	-		ABIE40_RS25155	0.50	-0.9
1,199,995	-		ABIE40_RS25155	0.50	-0.5
1,199,995	-		ABIE40_RS25155	0.50	+1.8
1,199,995	-		ABIE40_RS25155	0.50	-2.9
1,199,995	-		ABIE40_RS25155	0.50	-0.2
1,199,995	-		ABIE40_RS25155	0.50	-1.4
1,199,995	-		ABIE40_RS25155	0.50	+1.8
1,199,995	-		ABIE40_RS25155	0.50	-0.6
1,199,995	-		ABIE40_RS25155	0.50	-1.1
1,200,046	+		ABIE40_RS25155	0.55	-1.9
1,200,047	-		ABIE40_RS25155	0.55	+0.1
1,200,047	-		ABIE40_RS25155	0.55	+0.5
1,200,047	-		ABIE40_RS25155	0.55	-0.7
1,200,109	+		ABIE40_RS25155	0.61	-0.4
1,200,110	-		ABIE40_RS25155	0.61	+1.1
1,200,398	+		ABIE40_RS25155	0.87	-1.7
1,200,433	+				-1.0
1,200,433	+				+0.4
1,200,434	-				-1.5
1,200,475	+				+1.1
1,200,476	-				-0.8
1,200,506	+				-1.0
1,200,506	+				-2.0
1,200,506	+				-0.9
1,200,506	+				-2.9
1,200,507	-				+1.3
1,200,507	-				-0.3
1,200,507	-				+1.4
1,200,507	-				-0.1
1,200,507	-				+0.5
1,200,508	+				-0.5
1,200,508	+				+0.0
1,200,508	+				+0.5
1,200,508	+				+0.5
1,200,508	+				+1.4
1,200,508	+				-0.5
1,200,508	+				+1.1
1,200,509	-				-1.6
1,200,509	-				-1.7
1,200,509	-				-0.2
1,200,509	-				-0.5
1,200,509	-				-0.9
1,200,509	-				+3.1
1,200,509	-				-1.7
1,200,509	-				-1.5
1,200,509	-				+0.7
1,200,509	-				-1.5
1,200,509	-				-1.1
1,200,509	-				-0.9
1,200,509	-				-0.7
1,200,509	-				-1.4
1,200,509	-				-0.7
1,200,509	-				-1.1
1,200,509	-				+1.1
1,200,510	-				-1.2
1,200,543	+				+1.1
1,200,597	+				-0.5
1,200,598	-				+1.3
1,200,598	-				+3.7
1,200,598	-				+0.4
1,200,598	-				+0.4
1,200,760	+		ABIE40_RS25160	0.18	-0.7
1,200,761	-		ABIE40_RS25160	0.18	-0.5
1,200,836	+		ABIE40_RS25160	0.24	-1.7
1,200,912	+		ABIE40_RS25160	0.30	+0.2
1,200,924	-		ABIE40_RS25160	0.31	-0.8
1,200,980	+		ABIE40_RS25160	0.35	+0.0
1,200,980	+		ABIE40_RS25160	0.35	-0.7
1,200,981	-		ABIE40_RS25160	0.35	-1.0
1,200,981	-		ABIE40_RS25160	0.35	+1.5
1,200,981	-		ABIE40_RS25160	0.35	+2.1
1,200,981	-		ABIE40_RS25160	0.35	+0.6
1,200,981	-		ABIE40_RS25160	0.35	+0.1
1,200,981	-		ABIE40_RS25160	0.35	-1.7
1,201,034	+		ABIE40_RS25160	0.39	-0.8
1,201,035	-		ABIE40_RS25160	0.39	+0.4
1,201,035	-		ABIE40_RS25160	0.39	-1.5
1,201,247	+		ABIE40_RS25160	0.56	+0.2
1,201,247	+		ABIE40_RS25160	0.56	-1.4
1,201,247	+		ABIE40_RS25160	0.56	+0.9
1,201,247	+		ABIE40_RS25160	0.56	+2.1
1,201,248	-		ABIE40_RS25160	0.56	-0.1
1,201,248	-		ABIE40_RS25160	0.56	-1.4
1,201,341	+		ABIE40_RS25160	0.63	-1.7
1,201,342	-		ABIE40_RS25160	0.63	+3.9