Experiment: R2A with 3-octanone 5.3129 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS20555 and ABIE40_RS20560 are separated by 17 nucleotides ABIE40_RS20560 and ABIE40_RS20565 are separated by 311 nucleotides ABIE40_RS20565 and ABIE40_RS20570 are separated by 17 nucleotides
ABIE40_RS20555: ABIE40_RS20555 - L-fuconate dehydratase, at 215,970 to 217,247
_RS20555
ABIE40_RS20560: ABIE40_RS20560 - SDR family oxidoreductase, at 217,265 to 217,999
_RS20560
ABIE40_RS20565: ABIE40_RS20565 - hypothetical protein, at 218,311 to 218,640
_RS20565
ABIE40_RS20570: ABIE40_RS20570 - hydantoinase B/oxoprolinase family protein, at 218,658 to 222,278
_RS20570
Position (kb) 217
218 Strain fitness (log2 ratio) -2
-1
0
1
2 at 216.520 kb on + strand, within ABIE40_RS20555 at 216.520 kb on + strand, within ABIE40_RS20555 at 216.521 kb on - strand, within ABIE40_RS20555 at 216.521 kb on - strand, within ABIE40_RS20555 at 216.521 kb on - strand, within ABIE40_RS20555 at 216.567 kb on - strand, within ABIE40_RS20555 at 216.662 kb on - strand, within ABIE40_RS20555 at 216.662 kb on - strand, within ABIE40_RS20555 at 216.688 kb on + strand, within ABIE40_RS20555 at 216.688 kb on + strand, within ABIE40_RS20555 at 216.688 kb on + strand, within ABIE40_RS20555 at 216.688 kb on + strand, within ABIE40_RS20555 at 216.688 kb on + strand, within ABIE40_RS20555 at 216.689 kb on - strand, within ABIE40_RS20555 at 216.689 kb on - strand, within ABIE40_RS20555 at 216.698 kb on - strand, within ABIE40_RS20555 at 216.698 kb on - strand, within ABIE40_RS20555 at 216.802 kb on + strand, within ABIE40_RS20555 at 217.141 kb on + strand at 217.141 kb on + strand at 217.141 kb on + strand at 217.142 kb on - strand at 217.142 kb on - strand at 217.142 kb on - strand at 217.142 kb on - strand at 217.142 kb on - strand at 217.142 kb on - strand at 217.294 kb on - strand at 217.294 kb on - strand at 217.294 kb on - strand at 217.294 kb on - strand at 217.294 kb on - strand at 217.311 kb on + strand at 217.311 kb on + strand at 217.311 kb on + strand at 217.311 kb on + strand at 217.311 kb on + strand at 217.312 kb on - strand at 217.312 kb on - strand at 217.312 kb on - strand at 217.413 kb on + strand, within ABIE40_RS20560 at 217.503 kb on + strand, within ABIE40_RS20560 at 217.571 kb on - strand, within ABIE40_RS20560 at 218.027 kb on - strand at 218.186 kb on - strand at 218.187 kb on + strand at 218.187 kb on + strand at 218.188 kb on - strand at 218.188 kb on - strand at 218.188 kb on - strand at 218.188 kb on - strand at 218.188 kb on - strand at 218.192 kb on + strand at 218.193 kb on - strand at 218.242 kb on - strand at 218.379 kb on + strand, within ABIE40_RS20565 at 218.425 kb on + strand, within ABIE40_RS20565 at 218.479 kb on + strand, within ABIE40_RS20565 at 218.479 kb on + strand, within ABIE40_RS20565 at 218.479 kb on + strand, within ABIE40_RS20565 at 218.479 kb on + strand, within ABIE40_RS20565 at 218.480 kb on - strand, within ABIE40_RS20565 at 218.480 kb on - strand, within ABIE40_RS20565 at 218.480 kb on - strand, within ABIE40_RS20565 at 218.480 kb on - strand, within ABIE40_RS20565 at 218.522 kb on + strand, within ABIE40_RS20565 at 218.522 kb on + strand, within ABIE40_RS20565 at 218.522 kb on + strand, within ABIE40_RS20565 at 218.523 kb on - strand, within ABIE40_RS20565 at 218.523 kb on - strand, within ABIE40_RS20565 at 218.523 kb on - strand, within ABIE40_RS20565 at 218.523 kb on - strand, within ABIE40_RS20565 at 218.523 kb on - strand, within ABIE40_RS20565 at 218.527 kb on + strand, within ABIE40_RS20565 at 218.527 kb on + strand, within ABIE40_RS20565 at 218.528 kb on - strand, within ABIE40_RS20565 at 218.528 kb on - strand, within ABIE40_RS20565 at 218.528 kb on - strand, within ABIE40_RS20565 at 218.528 kb on - strand, within ABIE40_RS20565 at 218.582 kb on - strand, within ABIE40_RS20565 at 218.582 kb on - strand, within ABIE40_RS20565 at 218.582 kb on - strand, within ABIE40_RS20565 at 218.582 kb on - strand, within ABIE40_RS20565 at 218.583 kb on + strand, within ABIE40_RS20565 at 218.583 kb on + strand, within ABIE40_RS20565 at 218.584 kb on - strand, within ABIE40_RS20565
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.3129 mM remove 216,520 + ABIE40_RS20555 0.43 -1.3 216,520 + ABIE40_RS20555 0.43 -0.8 216,521 - ABIE40_RS20555 0.43 -0.3 216,521 - ABIE40_RS20555 0.43 -0.1 216,521 - ABIE40_RS20555 0.43 -0.2 216,567 - ABIE40_RS20555 0.47 -1.1 216,662 - ABIE40_RS20555 0.54 +0.5 216,662 - ABIE40_RS20555 0.54 -0.2 216,688 + ABIE40_RS20555 0.56 -0.3 216,688 + ABIE40_RS20555 0.56 +0.7 216,688 + ABIE40_RS20555 0.56 +0.4 216,688 + ABIE40_RS20555 0.56 -1.1 216,688 + ABIE40_RS20555 0.56 -1.1 216,689 - ABIE40_RS20555 0.56 -0.7 216,689 - ABIE40_RS20555 0.56 +0.8 216,698 - ABIE40_RS20555 0.57 +0.7 216,698 - ABIE40_RS20555 0.57 +0.5 216,802 + ABIE40_RS20555 0.65 -1.6 217,141 + +0.3 217,141 + +0.3 217,141 + -0.2 217,142 - -2.2 217,142 - -0.2 217,142 - -0.0 217,142 - +0.1 217,142 - +0.5 217,142 - +1.3 217,294 - -0.9 217,294 - +0.7 217,294 - -1.6 217,294 - +0.2 217,294 - +0.4 217,311 + +0.5 217,311 + -0.1 217,311 + -0.6 217,311 + -0.9 217,311 + -1.0 217,312 - +1.2 217,312 - +0.0 217,312 - -1.9 217,413 + ABIE40_RS20560 0.20 -1.6 217,503 + ABIE40_RS20560 0.32 -1.0 217,571 - ABIE40_RS20560 0.42 -0.6 218,027 - -0.8 218,186 - -0.7 218,187 + +1.2 218,187 + -0.0 218,188 - -1.2 218,188 - +0.8 218,188 - +0.2 218,188 - -0.6 218,188 - +1.2 218,192 + +0.2 218,193 - -0.3 218,242 - -0.2 218,379 + ABIE40_RS20565 0.21 -0.3 218,425 + ABIE40_RS20565 0.35 +0.3 218,479 + ABIE40_RS20565 0.51 +2.7 218,479 + ABIE40_RS20565 0.51 +0.5 218,479 + ABIE40_RS20565 0.51 +1.2 218,479 + ABIE40_RS20565 0.51 -0.5 218,480 - ABIE40_RS20565 0.51 +2.7 218,480 - ABIE40_RS20565 0.51 -1.9 218,480 - ABIE40_RS20565 0.51 +0.2 218,480 - ABIE40_RS20565 0.51 -0.0 218,522 + ABIE40_RS20565 0.64 +0.3 218,522 + ABIE40_RS20565 0.64 -2.0 218,522 + ABIE40_RS20565 0.64 +2.0 218,523 - ABIE40_RS20565 0.64 +0.2 218,523 - ABIE40_RS20565 0.64 -0.0 218,523 - ABIE40_RS20565 0.64 -1.0 218,523 - ABIE40_RS20565 0.64 -0.5 218,523 - ABIE40_RS20565 0.64 +0.1 218,527 + ABIE40_RS20565 0.65 +1.8 218,527 + ABIE40_RS20565 0.65 -0.8 218,528 - ABIE40_RS20565 0.66 -0.8 218,528 - ABIE40_RS20565 0.66 -0.8 218,528 - ABIE40_RS20565 0.66 +2.6 218,528 - ABIE40_RS20565 0.66 +1.0 218,582 - ABIE40_RS20565 0.82 -0.2 218,582 - ABIE40_RS20565 0.82 +0.2 218,582 - ABIE40_RS20565 0.82 -0.9 218,582 - ABIE40_RS20565 0.82 -0.7 218,583 + ABIE40_RS20565 0.82 +2.0 218,583 + ABIE40_RS20565 0.82 -0.6 218,584 - ABIE40_RS20565 0.83 -1.3
Or see this region's nucleotide sequence