Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS06775

Experiment: R2A with 3-octanone 5.3129 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS06765 and ABIE40_RS06770 are separated by 190 nucleotidesABIE40_RS06770 and ABIE40_RS06775 are separated by 10 nucleotidesABIE40_RS06775 and ABIE40_RS06780 are separated by 103 nucleotides ABIE40_RS06765: ABIE40_RS06765 - outer membrane protein assembly factor BamE, at 1,326,517 to 1,327,041 _RS06765 ABIE40_RS06770: ABIE40_RS06770 - ubiquinol-cytochrome C chaperone family protein, at 1,327,232 to 1,327,821 _RS06770 ABIE40_RS06775: ABIE40_RS06775 - DUF177 domain-containing protein, at 1,327,832 to 1,328,386 _RS06775 ABIE40_RS06780: ABIE40_RS06780 - phosphate acyltransferase PlsX, at 1,328,490 to 1,329,536 _RS06780 Position (kb) 1327 1328 1329Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1327.384 kb on + strand, within ABIE40_RS06770at 1327.384 kb on + strand, within ABIE40_RS06770at 1327.538 kb on - strand, within ABIE40_RS06770at 1327.609 kb on + strand, within ABIE40_RS06770at 1327.610 kb on - strand, within ABIE40_RS06770at 1327.627 kb on + strand, within ABIE40_RS06770at 1327.784 kb on + strandat 1327.785 kb on - strandat 1327.865 kb on + strandat 1327.865 kb on + strandat 1327.865 kb on + strandat 1327.866 kb on - strandat 1327.885 kb on + strandat 1327.885 kb on + strandat 1327.886 kb on - strandat 1327.914 kb on + strand, within ABIE40_RS06775at 1327.914 kb on + strand, within ABIE40_RS06775at 1327.937 kb on - strand, within ABIE40_RS06775at 1328.021 kb on - strand, within ABIE40_RS06775at 1328.315 kb on - strand, within ABIE40_RS06775at 1328.315 kb on - strand, within ABIE40_RS06775at 1328.388 kb on + strandat 1328.399 kb on + strandat 1328.419 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.3129 mM
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1,327,384 + ABIE40_RS06770 0.26 +1.2
1,327,384 + ABIE40_RS06770 0.26 +0.4
1,327,538 - ABIE40_RS06770 0.52 +0.3
1,327,609 + ABIE40_RS06770 0.64 -0.9
1,327,610 - ABIE40_RS06770 0.64 -0.3
1,327,627 + ABIE40_RS06770 0.67 -0.3
1,327,784 + -0.5
1,327,785 - -2.3
1,327,865 + +0.6
1,327,865 + +0.6
1,327,865 + -1.8
1,327,866 - -1.0
1,327,885 + -0.1
1,327,885 + -2.5
1,327,886 - -0.8
1,327,914 + ABIE40_RS06775 0.15 -1.6
1,327,914 + ABIE40_RS06775 0.15 +2.9
1,327,937 - ABIE40_RS06775 0.19 -1.5
1,328,021 - ABIE40_RS06775 0.34 -1.3
1,328,315 - ABIE40_RS06775 0.87 -1.0
1,328,315 - ABIE40_RS06775 0.87 -0.3
1,328,388 + -1.7
1,328,399 + -0.1
1,328,419 + -0.8

Or see this region's nucleotide sequence