Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS06375

Experiment: R2A with 3-octanone 5.3129 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS06370 and ABIE40_RS06375 are separated by 129 nucleotidesABIE40_RS06375 and ABIE40_RS06380 are separated by 14 nucleotidesABIE40_RS06380 and ABIE40_RS06385 are separated by 3 nucleotides ABIE40_RS06370: ABIE40_RS06370 - beta-ketoacyl-ACP synthase II, at 1,246,405 to 1,247,669 _RS06370 ABIE40_RS06375: ABIE40_RS06375 - endolytic transglycosylase MltG, at 1,247,799 to 1,249,019 _RS06375 ABIE40_RS06380: ABIE40_RS06380 - YicC/YloC family endoribonuclease, at 1,249,034 to 1,249,921 _RS06380 ABIE40_RS06385: ABIE40_RS06385 - guanylate kinase, at 1,249,925 to 1,250,587 _RS06385 Position (kb) 1247 1248 1249 1250Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1247.752 kb on + strandat 1247.752 kb on + strandat 1247.752 kb on + strandat 1247.753 kb on - strandat 1247.753 kb on - strandat 1247.762 kb on + strandat 1247.783 kb on + strandat 1247.783 kb on + strandat 1247.783 kb on + strandat 1247.783 kb on + strandat 1247.784 kb on - strandat 1247.785 kb on + strandat 1247.785 kb on + strandat 1247.785 kb on + strandat 1248.018 kb on + strand, within ABIE40_RS06375at 1248.019 kb on - strand, within ABIE40_RS06375at 1248.019 kb on - strand, within ABIE40_RS06375at 1248.019 kb on - strand, within ABIE40_RS06375at 1248.019 kb on - strand, within ABIE40_RS06375at 1248.022 kb on - strand, within ABIE40_RS06375at 1248.022 kb on - strand, within ABIE40_RS06375at 1248.036 kb on + strand, within ABIE40_RS06375at 1248.036 kb on + strand, within ABIE40_RS06375at 1248.210 kb on + strand, within ABIE40_RS06375at 1248.279 kb on + strand, within ABIE40_RS06375at 1248.280 kb on - strand, within ABIE40_RS06375at 1248.280 kb on - strand, within ABIE40_RS06375at 1248.281 kb on + strand, within ABIE40_RS06375at 1248.370 kb on + strand, within ABIE40_RS06375at 1248.370 kb on + strand, within ABIE40_RS06375at 1248.370 kb on + strand, within ABIE40_RS06375at 1248.371 kb on - strand, within ABIE40_RS06375at 1248.371 kb on - strand, within ABIE40_RS06375at 1248.405 kb on + strand, within ABIE40_RS06375at 1248.405 kb on + strand, within ABIE40_RS06375at 1248.405 kb on + strand, within ABIE40_RS06375at 1248.405 kb on + strand, within ABIE40_RS06375at 1248.405 kb on + strand, within ABIE40_RS06375at 1248.405 kb on + strand, within ABIE40_RS06375at 1248.405 kb on + strand, within ABIE40_RS06375at 1248.405 kb on + strand, within ABIE40_RS06375at 1248.406 kb on - strand, within ABIE40_RS06375at 1248.406 kb on - strand, within ABIE40_RS06375at 1248.657 kb on + strand, within ABIE40_RS06375at 1248.657 kb on + strand, within ABIE40_RS06375at 1248.657 kb on + strand, within ABIE40_RS06375at 1248.657 kb on + strand, within ABIE40_RS06375at 1248.658 kb on - strand, within ABIE40_RS06375at 1248.658 kb on - strand, within ABIE40_RS06375at 1248.658 kb on - strand, within ABIE40_RS06375at 1248.658 kb on - strand, within ABIE40_RS06375at 1248.702 kb on + strand, within ABIE40_RS06375at 1248.703 kb on - strand, within ABIE40_RS06375at 1248.703 kb on - strand, within ABIE40_RS06375at 1248.741 kb on + strand, within ABIE40_RS06375at 1248.741 kb on + strand, within ABIE40_RS06375at 1248.741 kb on + strand, within ABIE40_RS06375at 1248.741 kb on + strand, within ABIE40_RS06375at 1248.742 kb on - strand, within ABIE40_RS06375at 1248.742 kb on - strand, within ABIE40_RS06375at 1248.742 kb on - strand, within ABIE40_RS06375at 1248.742 kb on - strand, within ABIE40_RS06375at 1248.742 kb on - strand, within ABIE40_RS06375at 1248.742 kb on - strand, within ABIE40_RS06375at 1248.742 kb on - strand, within ABIE40_RS06375at 1248.743 kb on + strand, within ABIE40_RS06375at 1248.743 kb on + strand, within ABIE40_RS06375at 1248.744 kb on - strand, within ABIE40_RS06375at 1248.744 kb on - strand, within ABIE40_RS06375at 1248.744 kb on - strand, within ABIE40_RS06375at 1248.834 kb on + strand, within ABIE40_RS06375at 1248.834 kb on + strand, within ABIE40_RS06375at 1248.835 kb on - strand, within ABIE40_RS06375at 1248.835 kb on - strand, within ABIE40_RS06375at 1248.835 kb on - strand, within ABIE40_RS06375at 1249.512 kb on + strand, within ABIE40_RS06380at 1249.513 kb on - strand, within ABIE40_RS06380at 1249.513 kb on - strand, within ABIE40_RS06380at 1249.513 kb on - strand, within ABIE40_RS06380at 1249.800 kb on - strand, within ABIE40_RS06380at 1249.819 kb on + strand, within ABIE40_RS06380at 1249.819 kb on + strand, within ABIE40_RS06380at 1249.819 kb on + strand, within ABIE40_RS06380

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.3129 mM
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1,247,752 + -1.3
1,247,752 + -1.6
1,247,752 + -1.0
1,247,753 - -0.5
1,247,753 - +1.4
1,247,762 + -0.9
1,247,783 + -1.0
1,247,783 + -0.2
1,247,783 + -0.2
1,247,783 + -1.3
1,247,784 - +1.1
1,247,785 + -0.2
1,247,785 + +0.1
1,247,785 + -0.8
1,248,018 + ABIE40_RS06375 0.18 -2.5
1,248,019 - ABIE40_RS06375 0.18 +1.8
1,248,019 - ABIE40_RS06375 0.18 -3.2
1,248,019 - ABIE40_RS06375 0.18 -2.5
1,248,019 - ABIE40_RS06375 0.18 -0.2
1,248,022 - ABIE40_RS06375 0.18 +1.8
1,248,022 - ABIE40_RS06375 0.18 +0.3
1,248,036 + ABIE40_RS06375 0.19 -0.2
1,248,036 + ABIE40_RS06375 0.19 -0.2
1,248,210 + ABIE40_RS06375 0.34 -1.2
1,248,279 + ABIE40_RS06375 0.39 -1.0
1,248,280 - ABIE40_RS06375 0.39 -1.3
1,248,280 - ABIE40_RS06375 0.39 -3.2
1,248,281 + ABIE40_RS06375 0.39 -0.7
1,248,370 + ABIE40_RS06375 0.47 -3.2
1,248,370 + ABIE40_RS06375 0.47 -2.7
1,248,370 + ABIE40_RS06375 0.47 -0.5
1,248,371 - ABIE40_RS06375 0.47 -2.0
1,248,371 - ABIE40_RS06375 0.47 -0.2
1,248,405 + ABIE40_RS06375 0.50 -1.6
1,248,405 + ABIE40_RS06375 0.50 -1.2
1,248,405 + ABIE40_RS06375 0.50 -0.6
1,248,405 + ABIE40_RS06375 0.50 -3.1
1,248,405 + ABIE40_RS06375 0.50 +0.3
1,248,405 + ABIE40_RS06375 0.50 +0.5
1,248,405 + ABIE40_RS06375 0.50 -1.1
1,248,405 + ABIE40_RS06375 0.50 +1.8
1,248,406 - ABIE40_RS06375 0.50 -1.4
1,248,406 - ABIE40_RS06375 0.50 -2.0
1,248,657 + ABIE40_RS06375 0.70 -1.5
1,248,657 + ABIE40_RS06375 0.70 -1.6
1,248,657 + ABIE40_RS06375 0.70 +0.8
1,248,657 + ABIE40_RS06375 0.70 -2.9
1,248,658 - ABIE40_RS06375 0.70 -1.0
1,248,658 - ABIE40_RS06375 0.70 +0.3
1,248,658 - ABIE40_RS06375 0.70 +1.8
1,248,658 - ABIE40_RS06375 0.70 -1.7
1,248,702 + ABIE40_RS06375 0.74 +1.3
1,248,703 - ABIE40_RS06375 0.74 -0.3
1,248,703 - ABIE40_RS06375 0.74 -2.0
1,248,741 + ABIE40_RS06375 0.77 +1.8
1,248,741 + ABIE40_RS06375 0.77 +0.8
1,248,741 + ABIE40_RS06375 0.77 -3.2
1,248,741 + ABIE40_RS06375 0.77 -2.6
1,248,742 - ABIE40_RS06375 0.77 +0.3
1,248,742 - ABIE40_RS06375 0.77 +0.6
1,248,742 - ABIE40_RS06375 0.77 -0.9
1,248,742 - ABIE40_RS06375 0.77 +0.3
1,248,742 - ABIE40_RS06375 0.77 -0.6
1,248,742 - ABIE40_RS06375 0.77 -1.3
1,248,742 - ABIE40_RS06375 0.77 -2.2
1,248,743 + ABIE40_RS06375 0.77 -0.7
1,248,743 + ABIE40_RS06375 0.77 -0.5
1,248,744 - ABIE40_RS06375 0.77 +1.3
1,248,744 - ABIE40_RS06375 0.77 +1.8
1,248,744 - ABIE40_RS06375 0.77 -2.4
1,248,834 + ABIE40_RS06375 0.85 -1.0
1,248,834 + ABIE40_RS06375 0.85 -0.7
1,248,835 - ABIE40_RS06375 0.85 -0.5
1,248,835 - ABIE40_RS06375 0.85 -2.5
1,248,835 - ABIE40_RS06375 0.85 -1.4
1,249,512 + ABIE40_RS06380 0.54 -0.5
1,249,513 - ABIE40_RS06380 0.54 -0.2
1,249,513 - ABIE40_RS06380 0.54 +0.5
1,249,513 - ABIE40_RS06380 0.54 -1.6
1,249,800 - ABIE40_RS06380 0.86 +0.7
1,249,819 + ABIE40_RS06380 0.88 -1.0
1,249,819 + ABIE40_RS06380 0.88 -0.8
1,249,819 + ABIE40_RS06380 0.88 -0.0

Or see this region's nucleotide sequence