Experiment: R2A with 3-octanone 5.3129 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS03340 and ABIE40_RS03345 are separated by 347 nucleotides ABIE40_RS03345 and ABIE40_RS03350 are separated by 87 nucleotides
ABIE40_RS03340: ABIE40_RS03340 - iron-responsive transcriptional regulator RirA, at 665,710 to 666,189
_RS03340
ABIE40_RS03345: ABIE40_RS03345 - ABC transporter substrate-binding protein, at 666,537 to 668,132
_RS03345
ABIE40_RS03350: ABIE40_RS03350 - ABC transporter permease subunit, at 668,220 to 669,224
_RS03350
Position (kb) 666
667
668
669 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 665.548 kb on + strand at 665.549 kb on - strand at 665.549 kb on - strand at 665.550 kb on + strand at 665.550 kb on + strand at 665.550 kb on + strand at 665.550 kb on + strand at 665.550 kb on + strand at 665.551 kb on - strand at 665.551 kb on - strand at 665.551 kb on - strand at 665.551 kb on - strand at 665.618 kb on + strand at 665.640 kb on - strand at 665.640 kb on - strand at 665.672 kb on + strand at 665.672 kb on + strand at 665.672 kb on + strand at 665.672 kb on + strand at 665.672 kb on + strand at 665.673 kb on - strand at 665.673 kb on - strand at 665.673 kb on - strand at 665.674 kb on + strand at 665.674 kb on + strand at 665.674 kb on + strand at 665.674 kb on + strand at 665.674 kb on + strand at 665.675 kb on - strand at 665.676 kb on + strand at 665.676 kb on + strand at 665.677 kb on - strand at 665.677 kb on - strand at 665.677 kb on - strand at 665.677 kb on - strand at 665.677 kb on - strand at 665.734 kb on + strand at 665.734 kb on + strand at 665.734 kb on + strand at 665.755 kb on + strand at 665.755 kb on + strand at 665.756 kb on - strand at 665.756 kb on - strand at 665.809 kb on + strand, within ABIE40_RS03340 at 665.809 kb on + strand, within ABIE40_RS03340 at 665.809 kb on + strand, within ABIE40_RS03340 at 665.809 kb on + strand, within ABIE40_RS03340 at 665.809 kb on + strand, within ABIE40_RS03340 at 665.810 kb on - strand, within ABIE40_RS03340 at 665.810 kb on - strand, within ABIE40_RS03340 at 665.810 kb on - strand, within ABIE40_RS03340 at 665.810 kb on - strand, within ABIE40_RS03340 at 665.810 kb on - strand, within ABIE40_RS03340 at 666.018 kb on + strand, within ABIE40_RS03340 at 666.018 kb on + strand, within ABIE40_RS03340 at 666.138 kb on + strand, within ABIE40_RS03340 at 666.187 kb on + strand at 666.188 kb on - strand at 666.198 kb on + strand at 666.199 kb on - strand at 666.235 kb on + strand at 666.272 kb on + strand at 666.274 kb on + strand at 666.323 kb on + strand at 666.452 kb on + strand at 666.453 kb on - strand at 666.453 kb on - strand at 666.484 kb on + strand at 666.485 kb on - strand at 666.489 kb on - strand at 666.489 kb on - strand at 666.600 kb on + strand at 666.601 kb on - strand at 666.618 kb on + strand at 666.618 kb on + strand at 666.618 kb on + strand at 666.619 kb on - strand at 666.619 kb on - strand at 666.619 kb on - strand at 666.619 kb on - strand at 666.619 kb on - strand at 666.660 kb on + strand at 666.660 kb on + strand at 666.661 kb on - strand at 666.661 kb on - strand at 666.661 kb on - strand at 666.696 kb on - strand at 666.702 kb on + strand, within ABIE40_RS03345 at 666.702 kb on + strand, within ABIE40_RS03345 at 666.793 kb on - strand, within ABIE40_RS03345 at 666.793 kb on - strand, within ABIE40_RS03345 at 666.818 kb on - strand, within ABIE40_RS03345 at 666.924 kb on + strand, within ABIE40_RS03345 at 666.924 kb on + strand, within ABIE40_RS03345 at 666.924 kb on + strand, within ABIE40_RS03345 at 666.924 kb on + strand, within ABIE40_RS03345 at 666.924 kb on + strand, within ABIE40_RS03345 at 666.924 kb on + strand, within ABIE40_RS03345 at 666.924 kb on + strand, within ABIE40_RS03345 at 666.925 kb on - strand, within ABIE40_RS03345 at 666.925 kb on - strand, within ABIE40_RS03345 at 666.925 kb on - strand, within ABIE40_RS03345 at 666.925 kb on - strand, within ABIE40_RS03345 at 666.925 kb on - strand, within ABIE40_RS03345 at 666.925 kb on - strand, within ABIE40_RS03345 at 666.925 kb on - strand, within ABIE40_RS03345 at 666.925 kb on - strand, within ABIE40_RS03345 at 666.925 kb on - strand, within ABIE40_RS03345 at 666.925 kb on - strand, within ABIE40_RS03345 at 666.925 kb on - strand, within ABIE40_RS03345 at 666.943 kb on - strand, within ABIE40_RS03345 at 666.943 kb on - strand, within ABIE40_RS03345 at 666.943 kb on - strand, within ABIE40_RS03345 at 666.948 kb on + strand, within ABIE40_RS03345 at 667.092 kb on + strand, within ABIE40_RS03345 at 667.092 kb on + strand, within ABIE40_RS03345 at 667.092 kb on + strand, within ABIE40_RS03345 at 667.092 kb on + strand, within ABIE40_RS03345 at 667.093 kb on - strand, within ABIE40_RS03345 at 667.093 kb on - strand, within ABIE40_RS03345 at 667.218 kb on + strand, within ABIE40_RS03345 at 667.218 kb on + strand, within ABIE40_RS03345 at 667.218 kb on + strand, within ABIE40_RS03345 at 667.219 kb on - strand, within ABIE40_RS03345 at 667.413 kb on + strand, within ABIE40_RS03345 at 667.413 kb on + strand, within ABIE40_RS03345 at 667.413 kb on + strand, within ABIE40_RS03345 at 667.413 kb on + strand, within ABIE40_RS03345 at 667.414 kb on - strand, within ABIE40_RS03345 at 667.557 kb on + strand, within ABIE40_RS03345 at 667.557 kb on + strand, within ABIE40_RS03345 at 667.557 kb on + strand, within ABIE40_RS03345 at 667.557 kb on + strand, within ABIE40_RS03345 at 667.557 kb on + strand, within ABIE40_RS03345 at 667.558 kb on - strand, within ABIE40_RS03345 at 667.558 kb on - strand, within ABIE40_RS03345 at 667.558 kb on - strand, within ABIE40_RS03345 at 667.584 kb on + strand, within ABIE40_RS03345 at 667.584 kb on + strand, within ABIE40_RS03345 at 667.584 kb on + strand, within ABIE40_RS03345 at 667.584 kb on + strand, within ABIE40_RS03345 at 667.584 kb on + strand, within ABIE40_RS03345 at 667.585 kb on - strand, within ABIE40_RS03345 at 667.585 kb on - strand, within ABIE40_RS03345 at 667.585 kb on - strand, within ABIE40_RS03345 at 667.585 kb on - strand, within ABIE40_RS03345 at 667.674 kb on + strand, within ABIE40_RS03345 at 667.674 kb on + strand, within ABIE40_RS03345 at 667.674 kb on + strand, within ABIE40_RS03345 at 667.674 kb on + strand, within ABIE40_RS03345 at 667.674 kb on + strand, within ABIE40_RS03345 at 667.674 kb on + strand, within ABIE40_RS03345 at 667.675 kb on - strand, within ABIE40_RS03345 at 667.675 kb on - strand, within ABIE40_RS03345 at 667.675 kb on - strand, within ABIE40_RS03345 at 667.675 kb on - strand, within ABIE40_RS03345 at 667.747 kb on + strand, within ABIE40_RS03345 at 667.920 kb on + strand, within ABIE40_RS03345 at 667.921 kb on - strand, within ABIE40_RS03345 at 667.921 kb on - strand, within ABIE40_RS03345 at 667.980 kb on + strand at 667.980 kb on + strand at 667.981 kb on - strand at 667.981 kb on - strand at 667.981 kb on - strand at 667.998 kb on - strand at 668.134 kb on - strand at 668.135 kb on + strand at 668.144 kb on + strand at 668.206 kb on - strand at 668.206 kb on - strand at 668.206 kb on - strand at 668.225 kb on - strand at 668.225 kb on - strand at 668.292 kb on + strand at 668.406 kb on + strand, within ABIE40_RS03350 at 668.406 kb on + strand, within ABIE40_RS03350 at 668.406 kb on + strand, within ABIE40_RS03350 at 668.406 kb on + strand, within ABIE40_RS03350 at 668.406 kb on + strand, within ABIE40_RS03350 at 668.406 kb on + strand, within ABIE40_RS03350 at 668.406 kb on + strand, within ABIE40_RS03350 at 668.406 kb on + strand, within ABIE40_RS03350 at 668.406 kb on + strand, within ABIE40_RS03350 at 668.407 kb on - strand, within ABIE40_RS03350 at 668.407 kb on - strand, within ABIE40_RS03350 at 668.407 kb on - strand, within ABIE40_RS03350 at 668.407 kb on - strand, within ABIE40_RS03350 at 668.407 kb on - strand, within ABIE40_RS03350 at 668.407 kb on - strand, within ABIE40_RS03350 at 668.407 kb on - strand, within ABIE40_RS03350 at 668.407 kb on - strand, within ABIE40_RS03350 at 668.407 kb on - strand, within ABIE40_RS03350 at 668.407 kb on - strand, within ABIE40_RS03350 at 668.416 kb on - strand, within ABIE40_RS03350 at 668.433 kb on - strand, within ABIE40_RS03350 at 668.695 kb on - strand, within ABIE40_RS03350 at 668.736 kb on + strand, within ABIE40_RS03350 at 668.736 kb on + strand, within ABIE40_RS03350 at 668.736 kb on + strand, within ABIE40_RS03350 at 668.737 kb on - strand, within ABIE40_RS03350 at 668.737 kb on - strand, within ABIE40_RS03350 at 668.737 kb on - strand, within ABIE40_RS03350 at 668.820 kb on + strand, within ABIE40_RS03350 at 668.820 kb on + strand, within ABIE40_RS03350 at 668.820 kb on + strand, within ABIE40_RS03350 at 668.820 kb on + strand, within ABIE40_RS03350 at 668.820 kb on + strand, within ABIE40_RS03350 at 668.820 kb on + strand, within ABIE40_RS03350 at 668.820 kb on + strand, within ABIE40_RS03350 at 668.821 kb on - strand, within ABIE40_RS03350 at 668.821 kb on - strand, within ABIE40_RS03350 at 668.821 kb on - strand, within ABIE40_RS03350 at 668.821 kb on - strand, within ABIE40_RS03350 at 668.916 kb on + strand, within ABIE40_RS03350 at 668.916 kb on + strand, within ABIE40_RS03350 at 668.916 kb on + strand, within ABIE40_RS03350 at 668.916 kb on + strand, within ABIE40_RS03350 at 668.916 kb on + strand, within ABIE40_RS03350 at 668.916 kb on + strand, within ABIE40_RS03350 at 668.916 kb on + strand, within ABIE40_RS03350 at 668.916 kb on + strand, within ABIE40_RS03350 at 668.917 kb on - strand, within ABIE40_RS03350 at 668.917 kb on - strand, within ABIE40_RS03350 at 668.917 kb on - strand, within ABIE40_RS03350 at 668.917 kb on - strand, within ABIE40_RS03350
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-octanone 5.3129 mM remove 665,548 + +1.1 665,549 - +0.3 665,549 - -1.6 665,550 + +1.0 665,550 + +0.5 665,550 + +0.1 665,550 + +1.4 665,550 + +0.4 665,551 - -0.7 665,551 - -0.8 665,551 - +0.4 665,551 - -0.4 665,618 + -1.1 665,640 - -1.2 665,640 - -0.2 665,672 + -0.7 665,672 + +0.7 665,672 + -1.9 665,672 + +0.8 665,672 + +0.5 665,673 - -1.0 665,673 - -0.8 665,673 - -0.5 665,674 + -1.6 665,674 + +0.3 665,674 + -0.2 665,674 + +0.2 665,674 + +0.1 665,675 - -0.2 665,676 + +0.3 665,676 + -0.5 665,677 - -3.5 665,677 - +0.1 665,677 - -2.2 665,677 - -0.5 665,677 - -1.9 665,734 + -2.1 665,734 + -2.2 665,734 + -1.3 665,755 + -1.9 665,755 + +0.2 665,756 - -2.7 665,756 - -1.0 665,809 + ABIE40_RS03340 0.21 -1.4 665,809 + ABIE40_RS03340 0.21 -1.1 665,809 + ABIE40_RS03340 0.21 -2.1 665,809 + ABIE40_RS03340 0.21 -2.4 665,809 + ABIE40_RS03340 0.21 -1.5 665,810 - ABIE40_RS03340 0.21 -0.9 665,810 - ABIE40_RS03340 0.21 -2.0 665,810 - ABIE40_RS03340 0.21 -0.9 665,810 - ABIE40_RS03340 0.21 -1.4 665,810 - ABIE40_RS03340 0.21 -0.2 666,018 + ABIE40_RS03340 0.64 -1.4 666,018 + ABIE40_RS03340 0.64 +0.0 666,138 + ABIE40_RS03340 0.89 +0.9 666,187 + +0.1 666,188 - +0.5 666,198 + +0.8 666,199 - +0.8 666,235 + -0.7 666,272 + -2.5 666,274 + -1.1 666,323 + +0.8 666,452 + -0.4 666,453 - -1.4 666,453 - -2.2 666,484 + -0.5 666,485 - +0.0 666,489 - -0.7 666,489 - +0.8 666,600 + -0.7 666,601 - +1.6 666,618 + -1.5 666,618 + -2.7 666,618 + -0.8 666,619 - -0.3 666,619 - -1.2 666,619 - -0.7 666,619 - -0.2 666,619 - -2.5 666,660 + -0.7 666,660 + -0.8 666,661 - +0.3 666,661 - -0.5 666,661 - -1.5 666,696 - +0.2 666,702 + ABIE40_RS03345 0.10 -0.5 666,702 + ABIE40_RS03345 0.10 -0.2 666,793 - ABIE40_RS03345 0.16 -0.1 666,793 - ABIE40_RS03345 0.16 -0.4 666,818 - ABIE40_RS03345 0.18 +1.8 666,924 + ABIE40_RS03345 0.24 +1.2 666,924 + ABIE40_RS03345 0.24 -0.3 666,924 + ABIE40_RS03345 0.24 -0.6 666,924 + ABIE40_RS03345 0.24 +0.2 666,924 + ABIE40_RS03345 0.24 -1.0 666,924 + ABIE40_RS03345 0.24 -2.3 666,924 + ABIE40_RS03345 0.24 +0.4 666,925 - ABIE40_RS03345 0.24 -0.4 666,925 - ABIE40_RS03345 0.24 +2.4 666,925 - ABIE40_RS03345 0.24 +2.6 666,925 - ABIE40_RS03345 0.24 -1.4 666,925 - ABIE40_RS03345 0.24 +0.3 666,925 - ABIE40_RS03345 0.24 -0.9 666,925 - ABIE40_RS03345 0.24 +0.9 666,925 - ABIE40_RS03345 0.24 +0.4 666,925 - ABIE40_RS03345 0.24 -1.2 666,925 - ABIE40_RS03345 0.24 -1.7 666,925 - ABIE40_RS03345 0.24 -0.9 666,943 - ABIE40_RS03345 0.25 +0.7 666,943 - ABIE40_RS03345 0.25 -1.6 666,943 - ABIE40_RS03345 0.25 +0.6 666,948 + ABIE40_RS03345 0.26 -2.5 667,092 + ABIE40_RS03345 0.35 -0.8 667,092 + ABIE40_RS03345 0.35 -2.1 667,092 + ABIE40_RS03345 0.35 +0.1 667,092 + ABIE40_RS03345 0.35 +0.9 667,093 - ABIE40_RS03345 0.35 -1.2 667,093 - ABIE40_RS03345 0.35 -0.8 667,218 + ABIE40_RS03345 0.43 -0.8 667,218 + ABIE40_RS03345 0.43 +1.4 667,218 + ABIE40_RS03345 0.43 +0.8 667,219 - ABIE40_RS03345 0.43 -3.5 667,413 + ABIE40_RS03345 0.55 -0.2 667,413 + ABIE40_RS03345 0.55 -0.1 667,413 + ABIE40_RS03345 0.55 -2.2 667,413 + ABIE40_RS03345 0.55 -1.2 667,414 - ABIE40_RS03345 0.55 -1.0 667,557 + ABIE40_RS03345 0.64 -0.3 667,557 + ABIE40_RS03345 0.64 +0.3 667,557 + ABIE40_RS03345 0.64 +0.8 667,557 + ABIE40_RS03345 0.64 -0.1 667,557 + ABIE40_RS03345 0.64 -0.4 667,558 - ABIE40_RS03345 0.64 +0.2 667,558 - ABIE40_RS03345 0.64 -0.5 667,558 - ABIE40_RS03345 0.64 +0.1 667,584 + ABIE40_RS03345 0.66 -2.4 667,584 + ABIE40_RS03345 0.66 +0.1 667,584 + ABIE40_RS03345 0.66 +0.2 667,584 + ABIE40_RS03345 0.66 -0.1 667,584 + ABIE40_RS03345 0.66 -1.4 667,585 - ABIE40_RS03345 0.66 +0.9 667,585 - ABIE40_RS03345 0.66 +0.8 667,585 - ABIE40_RS03345 0.66 -1.5 667,585 - ABIE40_RS03345 0.66 +2.8 667,674 + ABIE40_RS03345 0.71 +1.0 667,674 + ABIE40_RS03345 0.71 -0.0 667,674 + ABIE40_RS03345 0.71 +0.4 667,674 + ABIE40_RS03345 0.71 -0.4 667,674 + ABIE40_RS03345 0.71 -3.9 667,674 + ABIE40_RS03345 0.71 +0.0 667,675 - ABIE40_RS03345 0.71 -1.2 667,675 - ABIE40_RS03345 0.71 -2.4 667,675 - ABIE40_RS03345 0.71 +0.2 667,675 - ABIE40_RS03345 0.71 -0.2 667,747 + ABIE40_RS03345 0.76 +0.1 667,920 + ABIE40_RS03345 0.87 +0.2 667,921 - ABIE40_RS03345 0.87 +0.6 667,921 - ABIE40_RS03345 0.87 -0.2 667,980 + +0.2 667,980 + +0.5 667,981 - +0.1 667,981 - -0.4 667,981 - +0.9 667,998 - +1.3 668,134 - -0.3 668,135 + +0.1 668,144 + +1.2 668,206 - +1.2 668,206 - +0.9 668,206 - -0.3 668,225 - -0.3 668,225 - +0.1 668,292 + +2.6 668,406 + ABIE40_RS03350 0.19 -0.0 668,406 + ABIE40_RS03350 0.19 +1.4 668,406 + ABIE40_RS03350 0.19 +0.2 668,406 + ABIE40_RS03350 0.19 +0.2 668,406 + ABIE40_RS03350 0.19 -0.1 668,406 + ABIE40_RS03350 0.19 -3.2 668,406 + ABIE40_RS03350 0.19 -0.7 668,406 + ABIE40_RS03350 0.19 +0.2 668,406 + ABIE40_RS03350 0.19 -0.0 668,407 - ABIE40_RS03350 0.19 -0.4 668,407 - ABIE40_RS03350 0.19 +0.2 668,407 - ABIE40_RS03350 0.19 -0.7 668,407 - ABIE40_RS03350 0.19 -0.0 668,407 - ABIE40_RS03350 0.19 +0.7 668,407 - ABIE40_RS03350 0.19 +0.6 668,407 - ABIE40_RS03350 0.19 +0.2 668,407 - ABIE40_RS03350 0.19 +1.2 668,407 - ABIE40_RS03350 0.19 +0.3 668,407 - ABIE40_RS03350 0.19 +0.6 668,416 - ABIE40_RS03350 0.20 -0.2 668,433 - ABIE40_RS03350 0.21 -0.2 668,695 - ABIE40_RS03350 0.47 -0.1 668,736 + ABIE40_RS03350 0.51 +2.7 668,736 + ABIE40_RS03350 0.51 +0.2 668,736 + ABIE40_RS03350 0.51 -0.3 668,737 - ABIE40_RS03350 0.51 -2.8 668,737 - ABIE40_RS03350 0.51 -2.1 668,737 - ABIE40_RS03350 0.51 -0.3 668,820 + ABIE40_RS03350 0.60 +1.5 668,820 + ABIE40_RS03350 0.60 -0.5 668,820 + ABIE40_RS03350 0.60 -3.2 668,820 + ABIE40_RS03350 0.60 -0.3 668,820 + ABIE40_RS03350 0.60 -1.0 668,820 + ABIE40_RS03350 0.60 -1.2 668,820 + ABIE40_RS03350 0.60 +0.5 668,821 - ABIE40_RS03350 0.60 -1.7 668,821 - ABIE40_RS03350 0.60 -0.8 668,821 - ABIE40_RS03350 0.60 +1.1 668,821 - ABIE40_RS03350 0.60 -1.1 668,916 + ABIE40_RS03350 0.69 -0.5 668,916 + ABIE40_RS03350 0.69 -0.2 668,916 + ABIE40_RS03350 0.69 -1.6 668,916 + ABIE40_RS03350 0.69 -0.2 668,916 + ABIE40_RS03350 0.69 -0.0 668,916 + ABIE40_RS03350 0.69 +1.1 668,916 + ABIE40_RS03350 0.69 -0.3 668,916 + ABIE40_RS03350 0.69 +2.3 668,917 - ABIE40_RS03350 0.69 -1.8 668,917 - ABIE40_RS03350 0.69 -0.2 668,917 - ABIE40_RS03350 0.69 +0.5 668,917 - ABIE40_RS03350 0.69 -0.3
Or see this region's nucleotide sequence