Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS03770

Experiment: R2A with 1-octen-3-ol 0.904549 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE40_RS03760 and ABIE40_RS03765 overlap by 20 nucleotidesABIE40_RS03765 and ABIE40_RS03770 are separated by 26 nucleotidesABIE40_RS03770 and ABIE40_RS03775 are separated by 0 nucleotides ABIE40_RS03760: ABIE40_RS03760 - pseudouridine synthase, at 741,977 to 743,995 _RS03760 ABIE40_RS03765: ABIE40_RS03765 - 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD, at 743,976 to 744,536 _RS03765 ABIE40_RS03770: ABIE40_RS03770 - patatin-like phospholipase family protein, at 744,563 to 745,462 _RS03770 ABIE40_RS03775: ABIE40_RS03775 - monovalent cation:proton antiporter-2 (CPA2) family protein, at 745,463 to 747,277 _RS03775 Position (kb) 744 745 746Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 743.604 kb on - strand, within ABIE40_RS03760at 744.019 kb on + strandat 744.020 kb on - strandat 744.020 kb on - strandat 744.023 kb on + strandat 744.024 kb on - strandat 744.024 kb on - strandat 744.349 kb on - strand, within ABIE40_RS03765at 744.349 kb on - strand, within ABIE40_RS03765at 744.468 kb on + strand, within ABIE40_RS03765at 744.468 kb on + strand, within ABIE40_RS03765at 744.468 kb on + strand, within ABIE40_RS03765at 744.468 kb on + strand, within ABIE40_RS03765at 744.468 kb on + strand, within ABIE40_RS03765at 744.468 kb on + strand, within ABIE40_RS03765at 744.468 kb on + strand, within ABIE40_RS03765at 744.468 kb on + strand, within ABIE40_RS03765at 744.468 kb on + strand, within ABIE40_RS03765at 744.468 kb on + strand, within ABIE40_RS03765at 744.468 kb on + strand, within ABIE40_RS03765at 744.468 kb on + strand, within ABIE40_RS03765at 744.469 kb on - strand, within ABIE40_RS03765at 744.469 kb on - strand, within ABIE40_RS03765at 744.469 kb on - strand, within ABIE40_RS03765at 744.469 kb on - strand, within ABIE40_RS03765at 744.469 kb on - strand, within ABIE40_RS03765at 744.535 kb on - strandat 744.578 kb on - strandat 744.578 kb on - strandat 744.586 kb on + strandat 744.586 kb on + strandat 744.594 kb on + strandat 744.595 kb on - strandat 744.682 kb on + strand, within ABIE40_RS03770at 744.814 kb on - strand, within ABIE40_RS03770at 744.814 kb on - strand, within ABIE40_RS03770at 745.010 kb on + strand, within ABIE40_RS03770at 745.010 kb on + strand, within ABIE40_RS03770at 745.010 kb on + strand, within ABIE40_RS03770at 745.011 kb on - strand, within ABIE40_RS03770at 745.011 kb on - strand, within ABIE40_RS03770at 745.154 kb on + strand, within ABIE40_RS03770at 745.154 kb on + strand, within ABIE40_RS03770at 745.154 kb on + strand, within ABIE40_RS03770at 745.154 kb on + strand, within ABIE40_RS03770at 745.155 kb on - strand, within ABIE40_RS03770at 745.155 kb on - strand, within ABIE40_RS03770at 745.155 kb on - strand, within ABIE40_RS03770at 745.460 kb on + strandat 745.460 kb on + strandat 745.460 kb on + strandat 745.460 kb on + strandat 745.460 kb on + strandat 745.461 kb on - strandat 745.461 kb on - strandat 745.461 kb on - strandat 745.464 kb on + strandat 745.464 kb on + strandat 745.465 kb on - strandat 745.465 kb on - strandat 745.465 kb on - strandat 745.465 kb on - strandat 745.465 kb on - strandat 745.477 kb on + strandat 745.656 kb on + strand, within ABIE40_RS03775at 745.656 kb on + strand, within ABIE40_RS03775at 745.656 kb on + strand, within ABIE40_RS03775at 745.657 kb on - strand, within ABIE40_RS03775at 745.657 kb on - strand, within ABIE40_RS03775at 745.657 kb on - strand, within ABIE40_RS03775at 745.740 kb on + strand, within ABIE40_RS03775at 745.740 kb on + strand, within ABIE40_RS03775at 745.741 kb on - strand, within ABIE40_RS03775at 745.741 kb on - strand, within ABIE40_RS03775at 745.785 kb on + strand, within ABIE40_RS03775at 745.785 kb on + strand, within ABIE40_RS03775at 745.786 kb on - strand, within ABIE40_RS03775at 745.867 kb on + strand, within ABIE40_RS03775at 745.867 kb on + strand, within ABIE40_RS03775at 745.868 kb on - strand, within ABIE40_RS03775at 745.868 kb on - strand, within ABIE40_RS03775at 745.941 kb on + strand, within ABIE40_RS03775at 745.941 kb on + strand, within ABIE40_RS03775at 745.941 kb on + strand, within ABIE40_RS03775at 745.941 kb on + strand, within ABIE40_RS03775at 746.246 kb on - strand, within ABIE40_RS03775at 746.293 kb on + strand, within ABIE40_RS03775at 746.340 kb on + strand, within ABIE40_RS03775at 746.341 kb on - strand, within ABIE40_RS03775at 746.341 kb on - strand, within ABIE40_RS03775at 746.341 kb on - strand, within ABIE40_RS03775at 746.341 kb on - strand, within ABIE40_RS03775at 746.341 kb on - strand, within ABIE40_RS03775at 746.341 kb on - strand, within ABIE40_RS03775at 746.452 kb on + strand, within ABIE40_RS03775at 746.452 kb on + strand, within ABIE40_RS03775

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.904549 mM
remove
743,604 - ABIE40_RS03760 0.81 -0.4
744,019 + -2.9
744,020 - -0.6
744,020 - -2.7
744,023 + +0.9
744,024 - -0.8
744,024 - -1.5
744,349 - ABIE40_RS03765 0.66 +1.1
744,349 - ABIE40_RS03765 0.66 -0.9
744,468 + ABIE40_RS03765 0.88 -0.3
744,468 + ABIE40_RS03765 0.88 +0.6
744,468 + ABIE40_RS03765 0.88 +0.5
744,468 + ABIE40_RS03765 0.88 +1.6
744,468 + ABIE40_RS03765 0.88 +0.1
744,468 + ABIE40_RS03765 0.88 -0.0
744,468 + ABIE40_RS03765 0.88 -0.2
744,468 + ABIE40_RS03765 0.88 +0.0
744,468 + ABIE40_RS03765 0.88 -1.0
744,468 + ABIE40_RS03765 0.88 +0.0
744,468 + ABIE40_RS03765 0.88 +0.8
744,468 + ABIE40_RS03765 0.88 -0.2
744,469 - ABIE40_RS03765 0.88 -0.2
744,469 - ABIE40_RS03765 0.88 +1.8
744,469 - ABIE40_RS03765 0.88 +0.9
744,469 - ABIE40_RS03765 0.88 -0.4
744,469 - ABIE40_RS03765 0.88 -0.3
744,535 - -0.0
744,578 - +0.9
744,578 - -0.5
744,586 + -0.5
744,586 + -0.0
744,594 + -0.4
744,595 - -1.9
744,682 + ABIE40_RS03770 0.13 -1.3
744,814 - ABIE40_RS03770 0.28 -1.5
744,814 - ABIE40_RS03770 0.28 -1.0
745,010 + ABIE40_RS03770 0.50 -0.8
745,010 + ABIE40_RS03770 0.50 -1.3
745,010 + ABIE40_RS03770 0.50 +0.3
745,011 - ABIE40_RS03770 0.50 +0.6
745,011 - ABIE40_RS03770 0.50 +0.4
745,154 + ABIE40_RS03770 0.66 -2.6
745,154 + ABIE40_RS03770 0.66 +1.8
745,154 + ABIE40_RS03770 0.66 +0.5
745,154 + ABIE40_RS03770 0.66 -2.3
745,155 - ABIE40_RS03770 0.66 -0.4
745,155 - ABIE40_RS03770 0.66 -0.0
745,155 - ABIE40_RS03770 0.66 -0.6
745,460 + +0.8
745,460 + -0.9
745,460 + -0.2
745,460 + -0.0
745,460 + -2.7
745,461 - -0.8
745,461 - -0.8
745,461 - +0.7
745,464 + -0.9
745,464 + -0.2
745,465 - +0.6
745,465 - -0.2
745,465 - +0.4
745,465 - +1.4
745,465 - -1.2
745,477 + +4.4
745,656 + ABIE40_RS03775 0.11 -1.5
745,656 + ABIE40_RS03775 0.11 -0.2
745,656 + ABIE40_RS03775 0.11 +0.2
745,657 - ABIE40_RS03775 0.11 -0.2
745,657 - ABIE40_RS03775 0.11 +0.5
745,657 - ABIE40_RS03775 0.11 -0.2
745,740 + ABIE40_RS03775 0.15 -0.2
745,740 + ABIE40_RS03775 0.15 +0.1
745,741 - ABIE40_RS03775 0.15 -1.5
745,741 - ABIE40_RS03775 0.15 +0.6
745,785 + ABIE40_RS03775 0.18 -0.2
745,785 + ABIE40_RS03775 0.18 -0.3
745,786 - ABIE40_RS03775 0.18 -0.5
745,867 + ABIE40_RS03775 0.22 +0.2
745,867 + ABIE40_RS03775 0.22 -2.8
745,868 - ABIE40_RS03775 0.22 -0.5
745,868 - ABIE40_RS03775 0.22 +0.2
745,941 + ABIE40_RS03775 0.26 -1.4
745,941 + ABIE40_RS03775 0.26 -3.4
745,941 + ABIE40_RS03775 0.26 -1.2
745,941 + ABIE40_RS03775 0.26 +0.9
746,246 - ABIE40_RS03775 0.43 +0.3
746,293 + ABIE40_RS03775 0.46 -2.0
746,340 + ABIE40_RS03775 0.48 -0.4
746,341 - ABIE40_RS03775 0.48 +2.2
746,341 - ABIE40_RS03775 0.48 -0.0
746,341 - ABIE40_RS03775 0.48 +0.3
746,341 - ABIE40_RS03775 0.48 -1.6
746,341 - ABIE40_RS03775 0.48 -0.2
746,341 - ABIE40_RS03775 0.48 -0.2
746,452 + ABIE40_RS03775 0.54 -2.5
746,452 + ABIE40_RS03775 0.54 -0.1

Or see this region's nucleotide sequence