Experiment: R2A with 1-octen-3-ol 0.904549 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS01620 and ABIE40_RS01625 are separated by 3 nucleotides ABIE40_RS01625 and ABIE40_RS01630 are separated by 9 nucleotides ABIE40_RS01630 and ABIE40_RS01635 are separated by 9 nucleotides
ABIE40_RS01620: ABIE40_RS01620 - DMT family transporter, at 320,829 to 321,749
_RS01620
ABIE40_RS01625: ABIE40_RS01625 - radical SAM family heme chaperone HemW, at 321,753 to 322,955
_RS01625
ABIE40_RS01630: ABIE40_RS01630 - RdgB/HAM1 family non-canonical purine NTP pyrophosphatase, at 322,965 to 323,609
_RS01630
ABIE40_RS01635: ABIE40_RS01635 - VOC family protein, at 323,619 to 324,035
_RS01635
Position (kb) 321
322
323 Strain fitness (log2 ratio) -2
-1
0
1
2 at 320.804 kb on + strand at 320.805 kb on - strand at 320.805 kb on - strand at 320.805 kb on - strand at 321.113 kb on + strand, within ABIE40_RS01620 at 321.114 kb on - strand, within ABIE40_RS01620 at 321.252 kb on + strand, within ABIE40_RS01620 at 321.252 kb on + strand, within ABIE40_RS01620 at 321.252 kb on + strand, within ABIE40_RS01620 at 321.252 kb on + strand, within ABIE40_RS01620 at 321.252 kb on + strand, within ABIE40_RS01620 at 321.252 kb on + strand, within ABIE40_RS01620 at 321.253 kb on - strand, within ABIE40_RS01620 at 321.253 kb on - strand, within ABIE40_RS01620 at 321.253 kb on - strand, within ABIE40_RS01620 at 321.253 kb on - strand, within ABIE40_RS01620 at 321.253 kb on - strand, within ABIE40_RS01620 at 321.253 kb on - strand, within ABIE40_RS01620 at 321.253 kb on - strand, within ABIE40_RS01620 at 321.253 kb on - strand, within ABIE40_RS01620 at 321.254 kb on + strand, within ABIE40_RS01620 at 321.254 kb on + strand, within ABIE40_RS01620 at 321.254 kb on + strand, within ABIE40_RS01620 at 321.255 kb on - strand, within ABIE40_RS01620 at 321.255 kb on - strand, within ABIE40_RS01620 at 321.255 kb on - strand, within ABIE40_RS01620 at 321.255 kb on - strand, within ABIE40_RS01620 at 321.255 kb on - strand, within ABIE40_RS01620 at 321.255 kb on - strand, within ABIE40_RS01620 at 321.255 kb on - strand, within ABIE40_RS01620 at 321.330 kb on + strand, within ABIE40_RS01620 at 321.334 kb on - strand, within ABIE40_RS01620 at 321.378 kb on - strand, within ABIE40_RS01620 at 321.537 kb on + strand, within ABIE40_RS01620 at 321.537 kb on + strand, within ABIE40_RS01620 at 321.537 kb on + strand, within ABIE40_RS01620 at 321.538 kb on - strand, within ABIE40_RS01620 at 321.538 kb on - strand, within ABIE40_RS01620 at 321.538 kb on - strand, within ABIE40_RS01620 at 321.538 kb on - strand, within ABIE40_RS01620 at 321.538 kb on - strand, within ABIE40_RS01620 at 321.593 kb on + strand, within ABIE40_RS01620 at 321.594 kb on - strand, within ABIE40_RS01620 at 321.594 kb on - strand, within ABIE40_RS01620 at 321.594 kb on - strand, within ABIE40_RS01620 at 321.594 kb on - strand, within ABIE40_RS01620 at 322.967 kb on - strand at 322.967 kb on - strand at 322.967 kb on - strand at 323.090 kb on - strand, within ABIE40_RS01630 at 323.090 kb on - strand, within ABIE40_RS01630 at 323.187 kb on - strand, within ABIE40_RS01630 at 323.343 kb on - strand, within ABIE40_RS01630 at 323.345 kb on - strand, within ABIE40_RS01630 at 323.345 kb on - strand, within ABIE40_RS01630 at 323.345 kb on - strand, within ABIE40_RS01630 at 323.568 kb on - strand at 323.568 kb on - strand at 323.621 kb on - strand at 323.857 kb on - strand, within ABIE40_RS01635 at 323.857 kb on - strand, within ABIE40_RS01635 at 323.934 kb on - strand, within ABIE40_RS01635 at 323.934 kb on - strand, within ABIE40_RS01635
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.904549 mM remove 320,804 + +0.5 320,805 - +0.9 320,805 - -0.5 320,805 - +0.7 321,113 + ABIE40_RS01620 0.31 +0.5 321,114 - ABIE40_RS01620 0.31 -1.5 321,252 + ABIE40_RS01620 0.46 +0.7 321,252 + ABIE40_RS01620 0.46 +0.8 321,252 + ABIE40_RS01620 0.46 +0.4 321,252 + ABIE40_RS01620 0.46 +0.9 321,252 + ABIE40_RS01620 0.46 +1.7 321,252 + ABIE40_RS01620 0.46 +1.2 321,253 - ABIE40_RS01620 0.46 -1.8 321,253 - ABIE40_RS01620 0.46 +1.0 321,253 - ABIE40_RS01620 0.46 -0.8 321,253 - ABIE40_RS01620 0.46 +0.5 321,253 - ABIE40_RS01620 0.46 +2.0 321,253 - ABIE40_RS01620 0.46 +0.6 321,253 - ABIE40_RS01620 0.46 +1.0 321,253 - ABIE40_RS01620 0.46 +1.2 321,254 + ABIE40_RS01620 0.46 -0.4 321,254 + ABIE40_RS01620 0.46 +0.2 321,254 + ABIE40_RS01620 0.46 -0.1 321,255 - ABIE40_RS01620 0.46 -1.4 321,255 - ABIE40_RS01620 0.46 -1.3 321,255 - ABIE40_RS01620 0.46 +0.1 321,255 - ABIE40_RS01620 0.46 -0.2 321,255 - ABIE40_RS01620 0.46 -0.2 321,255 - ABIE40_RS01620 0.46 +0.4 321,255 - ABIE40_RS01620 0.46 -0.7 321,330 + ABIE40_RS01620 0.54 +0.4 321,334 - ABIE40_RS01620 0.55 +0.1 321,378 - ABIE40_RS01620 0.60 +0.2 321,537 + ABIE40_RS01620 0.77 -0.3 321,537 + ABIE40_RS01620 0.77 +0.1 321,537 + ABIE40_RS01620 0.77 +0.0 321,538 - ABIE40_RS01620 0.77 +0.1 321,538 - ABIE40_RS01620 0.77 -1.1 321,538 - ABIE40_RS01620 0.77 -0.1 321,538 - ABIE40_RS01620 0.77 -1.6 321,538 - ABIE40_RS01620 0.77 +0.5 321,593 + ABIE40_RS01620 0.83 -0.7 321,594 - ABIE40_RS01620 0.83 -0.6 321,594 - ABIE40_RS01620 0.83 -1.0 321,594 - ABIE40_RS01620 0.83 -0.8 321,594 - ABIE40_RS01620 0.83 +0.4 322,967 - -2.4 322,967 - -1.6 322,967 - +0.4 323,090 - ABIE40_RS01630 0.19 -1.4 323,090 - ABIE40_RS01630 0.19 -0.7 323,187 - ABIE40_RS01630 0.34 -0.3 323,343 - ABIE40_RS01630 0.59 -0.4 323,345 - ABIE40_RS01630 0.59 -1.2 323,345 - ABIE40_RS01630 0.59 +0.3 323,345 - ABIE40_RS01630 0.59 +0.5 323,568 - +0.0 323,568 - +1.5 323,621 - +1.8 323,857 - ABIE40_RS01635 0.57 -1.1 323,857 - ABIE40_RS01635 0.57 -1.0 323,934 - ABIE40_RS01635 0.76 -0.1 323,934 - ABIE40_RS01635 0.76 +0.2
Or see this region's nucleotide sequence