Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS01610

Experiment: R2A with 1-octen-3-ol 0.904549 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS01605 and ABIE40_RS01610 are separated by 101 nucleotidesABIE40_RS01610 and ABIE40_RS01615 are separated by 193 nucleotides ABIE40_RS01605: ABIE40_RS01605 - chromosomal replication initiator protein DnaA, at 317,132 to 318,688 _RS01605 ABIE40_RS01610: ABIE40_RS01610 - siderophore-iron reductase FhuF, at 318,790 to 319,548 _RS01610 ABIE40_RS01615: ABIE40_RS01615 - transcriptional regulator GcvA, at 319,742 to 320,629 _RS01615 Position (kb) 318 319 320Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 318.686 kb on + strandat 318.686 kb on + strandat 318.686 kb on + strandat 318.686 kb on + strandat 318.686 kb on + strandat 318.687 kb on - strandat 318.687 kb on - strandat 318.744 kb on - strandat 318.744 kb on - strandat 318.749 kb on + strandat 318.750 kb on - strandat 318.750 kb on - strandat 318.785 kb on - strandat 318.791 kb on + strandat 318.791 kb on + strandat 318.791 kb on + strandat 318.792 kb on - strandat 318.792 kb on - strandat 318.792 kb on - strandat 318.854 kb on + strandat 318.854 kb on + strandat 318.854 kb on + strandat 318.855 kb on - strandat 318.855 kb on - strandat 318.887 kb on + strand, within ABIE40_RS01610at 318.887 kb on + strand, within ABIE40_RS01610at 318.887 kb on + strand, within ABIE40_RS01610at 318.887 kb on + strand, within ABIE40_RS01610at 318.887 kb on + strand, within ABIE40_RS01610at 318.887 kb on + strand, within ABIE40_RS01610at 318.888 kb on - strand, within ABIE40_RS01610at 318.888 kb on - strand, within ABIE40_RS01610at 318.968 kb on - strand, within ABIE40_RS01610at 319.025 kb on + strand, within ABIE40_RS01610at 319.025 kb on + strand, within ABIE40_RS01610at 319.026 kb on - strand, within ABIE40_RS01610at 319.032 kb on + strand, within ABIE40_RS01610at 319.034 kb on + strand, within ABIE40_RS01610at 319.034 kb on + strand, within ABIE40_RS01610at 319.035 kb on - strand, within ABIE40_RS01610at 319.035 kb on - strand, within ABIE40_RS01610at 319.035 kb on - strand, within ABIE40_RS01610at 319.035 kb on - strand, within ABIE40_RS01610at 319.283 kb on + strand, within ABIE40_RS01610at 319.283 kb on + strand, within ABIE40_RS01610at 319.307 kb on + strand, within ABIE40_RS01610at 319.307 kb on + strand, within ABIE40_RS01610at 319.308 kb on - strand, within ABIE40_RS01610at 319.308 kb on - strand, within ABIE40_RS01610at 319.308 kb on - strand, within ABIE40_RS01610at 319.310 kb on + strand, within ABIE40_RS01610at 319.310 kb on + strand, within ABIE40_RS01610at 319.365 kb on + strand, within ABIE40_RS01610at 319.365 kb on + strand, within ABIE40_RS01610at 319.366 kb on - strand, within ABIE40_RS01610at 319.367 kb on + strand, within ABIE40_RS01610at 319.367 kb on + strand, within ABIE40_RS01610at 319.368 kb on - strand, within ABIE40_RS01610at 319.368 kb on - strand, within ABIE40_RS01610at 319.615 kb on + strandat 319.616 kb on - strandat 319.660 kb on - strandat 319.660 kb on - strandat 319.672 kb on + strandat 319.680 kb on + strandat 319.680 kb on + strandat 319.816 kb on - strandat 319.816 kb on - strandat 319.816 kb on - strandat 319.947 kb on + strand, within ABIE40_RS01615at 319.948 kb on - strand, within ABIE40_RS01615at 319.948 kb on - strand, within ABIE40_RS01615at 320.043 kb on + strand, within ABIE40_RS01615at 320.043 kb on + strand, within ABIE40_RS01615at 320.044 kb on - strand, within ABIE40_RS01615at 320.044 kb on - strand, within ABIE40_RS01615at 320.044 kb on - strand, within ABIE40_RS01615at 320.310 kb on + strand, within ABIE40_RS01615at 320.310 kb on + strand, within ABIE40_RS01615at 320.310 kb on + strand, within ABIE40_RS01615at 320.310 kb on + strand, within ABIE40_RS01615at 320.310 kb on + strand, within ABIE40_RS01615at 320.310 kb on + strand, within ABIE40_RS01615at 320.310 kb on + strand, within ABIE40_RS01615at 320.310 kb on + strand, within ABIE40_RS01615at 320.310 kb on + strand, within ABIE40_RS01615at 320.310 kb on + strand, within ABIE40_RS01615at 320.311 kb on - strand, within ABIE40_RS01615at 320.311 kb on - strand, within ABIE40_RS01615at 320.311 kb on - strand, within ABIE40_RS01615at 320.311 kb on - strand, within ABIE40_RS01615at 320.424 kb on + strand, within ABIE40_RS01615at 320.424 kb on + strand, within ABIE40_RS01615

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.904549 mM
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318,686 + +0.3
318,686 + +0.4
318,686 + +0.5
318,686 + +0.4
318,686 + +0.9
318,687 - +1.8
318,687 - +0.6
318,744 - +0.8
318,744 - +0.8
318,749 + -0.8
318,750 - +0.0
318,750 - +0.2
318,785 - -3.1
318,791 + +0.1
318,791 + -0.4
318,791 + -0.9
318,792 - +1.1
318,792 - +0.2
318,792 - +0.6
318,854 + +0.2
318,854 + +0.1
318,854 + +1.1
318,855 - +0.5
318,855 - -0.1
318,887 + ABIE40_RS01610 0.13 -1.5
318,887 + ABIE40_RS01610 0.13 +0.1
318,887 + ABIE40_RS01610 0.13 -0.5
318,887 + ABIE40_RS01610 0.13 +0.2
318,887 + ABIE40_RS01610 0.13 +3.4
318,887 + ABIE40_RS01610 0.13 -1.6
318,888 - ABIE40_RS01610 0.13 -0.1
318,888 - ABIE40_RS01610 0.13 +0.8
318,968 - ABIE40_RS01610 0.23 +0.7
319,025 + ABIE40_RS01610 0.31 -0.5
319,025 + ABIE40_RS01610 0.31 +0.2
319,026 - ABIE40_RS01610 0.31 +0.6
319,032 + ABIE40_RS01610 0.32 +0.1
319,034 + ABIE40_RS01610 0.32 +0.8
319,034 + ABIE40_RS01610 0.32 -1.5
319,035 - ABIE40_RS01610 0.32 -2.0
319,035 - ABIE40_RS01610 0.32 +0.1
319,035 - ABIE40_RS01610 0.32 +0.8
319,035 - ABIE40_RS01610 0.32 +1.9
319,283 + ABIE40_RS01610 0.65 +0.2
319,283 + ABIE40_RS01610 0.65 -1.0
319,307 + ABIE40_RS01610 0.68 -1.8
319,307 + ABIE40_RS01610 0.68 -2.9
319,308 - ABIE40_RS01610 0.68 -1.2
319,308 - ABIE40_RS01610 0.68 -0.4
319,308 - ABIE40_RS01610 0.68 -1.1
319,310 + ABIE40_RS01610 0.69 +0.8
319,310 + ABIE40_RS01610 0.69 -0.1
319,365 + ABIE40_RS01610 0.76 -0.2
319,365 + ABIE40_RS01610 0.76 +0.4
319,366 - ABIE40_RS01610 0.76 -1.0
319,367 + ABIE40_RS01610 0.76 +1.7
319,367 + ABIE40_RS01610 0.76 -0.5
319,368 - ABIE40_RS01610 0.76 +0.5
319,368 - ABIE40_RS01610 0.76 -0.5
319,615 + +0.5
319,616 - +1.0
319,660 - +0.5
319,660 - +1.1
319,672 + -0.2
319,680 + -0.4
319,680 + -0.7
319,816 - -1.1
319,816 - -0.4
319,816 - +0.1
319,947 + ABIE40_RS01615 0.23 -1.2
319,948 - ABIE40_RS01615 0.23 -1.3
319,948 - ABIE40_RS01615 0.23 +1.8
320,043 + ABIE40_RS01615 0.34 -0.8
320,043 + ABIE40_RS01615 0.34 -2.0
320,044 - ABIE40_RS01615 0.34 -0.7
320,044 - ABIE40_RS01615 0.34 +0.4
320,044 - ABIE40_RS01615 0.34 -0.6
320,310 + ABIE40_RS01615 0.64 +0.4
320,310 + ABIE40_RS01615 0.64 +0.3
320,310 + ABIE40_RS01615 0.64 -0.9
320,310 + ABIE40_RS01615 0.64 -0.8
320,310 + ABIE40_RS01615 0.64 -0.0
320,310 + ABIE40_RS01615 0.64 -1.6
320,310 + ABIE40_RS01615 0.64 +1.1
320,310 + ABIE40_RS01615 0.64 +0.2
320,310 + ABIE40_RS01615 0.64 -1.5
320,310 + ABIE40_RS01615 0.64 +1.8
320,311 - ABIE40_RS01615 0.64 -1.3
320,311 - ABIE40_RS01615 0.64 -0.1
320,311 - ABIE40_RS01615 0.64 -1.0
320,311 - ABIE40_RS01615 0.64 -1.2
320,424 + ABIE40_RS01615 0.77 +1.5
320,424 + ABIE40_RS01615 0.77 +0.2

Or see this region's nucleotide sequence