Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS27800

Experiment: R2A with 1-octen-3-ol 0.904549 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS27790 and ABIE40_RS27795 are separated by 53 nucleotidesABIE40_RS27795 and ABIE40_RS27800 overlap by 4 nucleotidesABIE40_RS27800 and ABIE40_RS27805 are separated by 472 nucleotides ABIE40_RS27790: ABIE40_RS27790 - extracellular solute-binding protein, at 269,257 to 270,576 _RS27790 ABIE40_RS27795: ABIE40_RS27795 - sugar ABC transporter permease, at 270,630 to 271,502 _RS27795 ABIE40_RS27800: ABIE40_RS27800 - carbohydrate ABC transporter permease, at 271,499 to 272,320 _RS27800 ABIE40_RS27805: ABIE40_RS27805 - hypothetical protein, at 272,793 to 273,022 _RS27805 Position (kb) 271 272 273Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 270.635 kb on + strandat 270.636 kb on - strandat 270.637 kb on + strandat 270.637 kb on + strandat 270.637 kb on + strandat 270.637 kb on + strandat 270.637 kb on + strandat 270.637 kb on + strandat 270.637 kb on + strandat 270.638 kb on - strandat 270.638 kb on - strandat 270.638 kb on - strandat 270.640 kb on + strandat 270.640 kb on + strandat 270.640 kb on + strandat 270.640 kb on + strandat 270.641 kb on - strandat 270.663 kb on + strandat 270.664 kb on - strandat 270.792 kb on + strand, within ABIE40_RS27795at 270.792 kb on + strand, within ABIE40_RS27795at 270.793 kb on - strand, within ABIE40_RS27795at 270.793 kb on - strand, within ABIE40_RS27795at 270.994 kb on - strand, within ABIE40_RS27795at 271.032 kb on + strand, within ABIE40_RS27795at 271.033 kb on - strand, within ABIE40_RS27795at 271.033 kb on - strand, within ABIE40_RS27795at 271.035 kb on + strand, within ABIE40_RS27795at 271.035 kb on + strand, within ABIE40_RS27795at 271.035 kb on + strand, within ABIE40_RS27795at 271.035 kb on + strand, within ABIE40_RS27795at 271.035 kb on + strand, within ABIE40_RS27795at 271.035 kb on + strand, within ABIE40_RS27795at 271.036 kb on - strand, within ABIE40_RS27795at 271.036 kb on - strand, within ABIE40_RS27795at 271.036 kb on - strand, within ABIE40_RS27795at 271.036 kb on - strand, within ABIE40_RS27795at 271.036 kb on - strand, within ABIE40_RS27795at 271.090 kb on + strand, within ABIE40_RS27795at 271.149 kb on + strand, within ABIE40_RS27795at 271.149 kb on + strand, within ABIE40_RS27795at 271.150 kb on - strand, within ABIE40_RS27795at 271.150 kb on - strand, within ABIE40_RS27795at 271.317 kb on + strand, within ABIE40_RS27795at 271.317 kb on + strand, within ABIE40_RS27795at 271.318 kb on - strand, within ABIE40_RS27795at 271.318 kb on - strand, within ABIE40_RS27795at 271.318 kb on - strand, within ABIE40_RS27795at 271.318 kb on - strand, within ABIE40_RS27795at 271.368 kb on + strand, within ABIE40_RS27795at 271.368 kb on + strand, within ABIE40_RS27795at 271.368 kb on + strand, within ABIE40_RS27795at 271.368 kb on + strand, within ABIE40_RS27795at 271.369 kb on - strand, within ABIE40_RS27795at 271.369 kb on - strand, within ABIE40_RS27795at 271.369 kb on - strand, within ABIE40_RS27795at 271.369 kb on - strand, within ABIE40_RS27795at 271.374 kb on + strand, within ABIE40_RS27795at 271.375 kb on - strand, within ABIE40_RS27795at 271.375 kb on - strand, within ABIE40_RS27795at 271.458 kb on + strandat 271.650 kb on - strand, within ABIE40_RS27800at 271.684 kb on + strand, within ABIE40_RS27800at 271.688 kb on + strand, within ABIE40_RS27800at 271.688 kb on + strand, within ABIE40_RS27800at 271.688 kb on + strand, within ABIE40_RS27800at 271.688 kb on + strand, within ABIE40_RS27800at 271.689 kb on - strand, within ABIE40_RS27800at 271.689 kb on - strand, within ABIE40_RS27800at 271.689 kb on - strand, within ABIE40_RS27800at 271.694 kb on + strand, within ABIE40_RS27800at 271.694 kb on + strand, within ABIE40_RS27800at 271.695 kb on - strand, within ABIE40_RS27800at 271.695 kb on - strand, within ABIE40_RS27800at 271.695 kb on - strand, within ABIE40_RS27800at 271.766 kb on + strand, within ABIE40_RS27800at 271.767 kb on - strand, within ABIE40_RS27800at 271.862 kb on + strand, within ABIE40_RS27800at 271.862 kb on + strand, within ABIE40_RS27800at 271.862 kb on + strand, within ABIE40_RS27800at 271.863 kb on - strand, within ABIE40_RS27800at 271.863 kb on - strand, within ABIE40_RS27800at 271.863 kb on - strand, within ABIE40_RS27800at 271.871 kb on + strand, within ABIE40_RS27800at 271.871 kb on + strand, within ABIE40_RS27800at 271.871 kb on + strand, within ABIE40_RS27800at 271.871 kb on + strand, within ABIE40_RS27800at 271.872 kb on - strand, within ABIE40_RS27800at 271.872 kb on - strand, within ABIE40_RS27800at 271.872 kb on - strand, within ABIE40_RS27800at 272.202 kb on + strand, within ABIE40_RS27800at 272.202 kb on + strand, within ABIE40_RS27800at 272.203 kb on - strand, within ABIE40_RS27800at 272.203 kb on - strand, within ABIE40_RS27800at 272.203 kb on - strand, within ABIE40_RS27800at 272.273 kb on + strandat 272.273 kb on + strandat 272.273 kb on + strandat 272.532 kb on + strandat 272.533 kb on - strandat 272.533 kb on - strandat 272.533 kb on - strandat 272.549 kb on + strandat 272.550 kb on - strandat 272.550 kb on - strandat 272.550 kb on - strandat 272.585 kb on - strandat 272.665 kb on + strandat 272.666 kb on - strandat 272.703 kb on + strandat 272.748 kb on + strandat 272.749 kb on - strandat 272.749 kb on - strandat 272.749 kb on - strandat 272.769 kb on - strandat 272.769 kb on - strandat 272.772 kb on - strandat 272.780 kb on + strandat 272.780 kb on + strandat 272.781 kb on - strandat 272.785 kb on - strandat 272.785 kb on - strandat 272.785 kb on - strandat 272.827 kb on - strand, within ABIE40_RS27805at 272.882 kb on + strand, within ABIE40_RS27805at 272.882 kb on + strand, within ABIE40_RS27805at 272.882 kb on + strand, within ABIE40_RS27805at 272.927 kb on + strand, within ABIE40_RS27805at 272.927 kb on + strand, within ABIE40_RS27805at 272.927 kb on + strand, within ABIE40_RS27805at 272.928 kb on - strand, within ABIE40_RS27805at 272.932 kb on + strand, within ABIE40_RS27805at 273.020 kb on + strandat 273.041 kb on + strandat 273.078 kb on + strandat 273.078 kb on + strandat 273.079 kb on - strandat 273.079 kb on - strandat 273.100 kb on + strandat 273.101 kb on - strandat 273.135 kb on + strandat 273.144 kb on - strandat 273.144 kb on - strandat 273.288 kb on + strandat 273.289 kb on - strandat 273.289 kb on - strandat 273.289 kb on - strandat 273.289 kb on - strandat 273.289 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.904549 mM
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270,635 + +0.4
270,636 - +0.3
270,637 + +1.3
270,637 + +1.0
270,637 + -1.1
270,637 + +1.0
270,637 + -0.4
270,637 + +1.1
270,637 + -1.6
270,638 - +2.9
270,638 - +2.1
270,638 - -0.6
270,640 + +2.1
270,640 + -0.3
270,640 + -2.4
270,640 + -0.1
270,641 - +0.2
270,663 + -0.8
270,664 - -0.0
270,792 + ABIE40_RS27795 0.19 +0.7
270,792 + ABIE40_RS27795 0.19 +3.6
270,793 - ABIE40_RS27795 0.19 +2.4
270,793 - ABIE40_RS27795 0.19 -1.2
270,994 - ABIE40_RS27795 0.42 -0.4
271,032 + ABIE40_RS27795 0.46 +2.1
271,033 - ABIE40_RS27795 0.46 +2.5
271,033 - ABIE40_RS27795 0.46 +0.7
271,035 + ABIE40_RS27795 0.46 +0.6
271,035 + ABIE40_RS27795 0.46 +1.2
271,035 + ABIE40_RS27795 0.46 +0.2
271,035 + ABIE40_RS27795 0.46 +0.4
271,035 + ABIE40_RS27795 0.46 +0.3
271,035 + ABIE40_RS27795 0.46 -0.3
271,036 - ABIE40_RS27795 0.47 -1.3
271,036 - ABIE40_RS27795 0.47 -0.0
271,036 - ABIE40_RS27795 0.47 -1.3
271,036 - ABIE40_RS27795 0.47 +0.1
271,036 - ABIE40_RS27795 0.47 +0.1
271,090 + ABIE40_RS27795 0.53 -2.3
271,149 + ABIE40_RS27795 0.59 -1.2
271,149 + ABIE40_RS27795 0.59 -0.9
271,150 - ABIE40_RS27795 0.60 -0.9
271,150 - ABIE40_RS27795 0.60 -0.2
271,317 + ABIE40_RS27795 0.79 +0.5
271,317 + ABIE40_RS27795 0.79 +1.1
271,318 - ABIE40_RS27795 0.79 -0.4
271,318 - ABIE40_RS27795 0.79 +1.4
271,318 - ABIE40_RS27795 0.79 +0.5
271,318 - ABIE40_RS27795 0.79 +2.6
271,368 + ABIE40_RS27795 0.85 +1.0
271,368 + ABIE40_RS27795 0.85 +0.7
271,368 + ABIE40_RS27795 0.85 -1.6
271,368 + ABIE40_RS27795 0.85 -0.7
271,369 - ABIE40_RS27795 0.85 -0.9
271,369 - ABIE40_RS27795 0.85 +1.2
271,369 - ABIE40_RS27795 0.85 +1.0
271,369 - ABIE40_RS27795 0.85 -0.2
271,374 + ABIE40_RS27795 0.85 +1.6
271,375 - ABIE40_RS27795 0.85 -1.7
271,375 - ABIE40_RS27795 0.85 +0.1
271,458 + +0.8
271,650 - ABIE40_RS27800 0.18 +1.1
271,684 + ABIE40_RS27800 0.23 -1.1
271,688 + ABIE40_RS27800 0.23 -0.2
271,688 + ABIE40_RS27800 0.23 -0.9
271,688 + ABIE40_RS27800 0.23 -0.7
271,688 + ABIE40_RS27800 0.23 -2.9
271,689 - ABIE40_RS27800 0.23 +0.1
271,689 - ABIE40_RS27800 0.23 +2.1
271,689 - ABIE40_RS27800 0.23 -1.7
271,694 + ABIE40_RS27800 0.24 -1.2
271,694 + ABIE40_RS27800 0.24 +2.4
271,695 - ABIE40_RS27800 0.24 -1.2
271,695 - ABIE40_RS27800 0.24 -1.4
271,695 - ABIE40_RS27800 0.24 +0.4
271,766 + ABIE40_RS27800 0.32 -2.4
271,767 - ABIE40_RS27800 0.33 -0.8
271,862 + ABIE40_RS27800 0.44 +0.4
271,862 + ABIE40_RS27800 0.44 -1.0
271,862 + ABIE40_RS27800 0.44 -0.1
271,863 - ABIE40_RS27800 0.44 -1.8
271,863 - ABIE40_RS27800 0.44 -0.3
271,863 - ABIE40_RS27800 0.44 +1.1
271,871 + ABIE40_RS27800 0.45 -0.3
271,871 + ABIE40_RS27800 0.45 +1.1
271,871 + ABIE40_RS27800 0.45 +0.2
271,871 + ABIE40_RS27800 0.45 +0.6
271,872 - ABIE40_RS27800 0.45 +1.6
271,872 - ABIE40_RS27800 0.45 -0.1
271,872 - ABIE40_RS27800 0.45 -0.9
272,202 + ABIE40_RS27800 0.86 +0.3
272,202 + ABIE40_RS27800 0.86 +0.6
272,203 - ABIE40_RS27800 0.86 +3.7
272,203 - ABIE40_RS27800 0.86 +0.8
272,203 - ABIE40_RS27800 0.86 -0.7
272,273 + +2.1
272,273 + -2.4
272,273 + -0.4
272,532 + +0.7
272,533 - -1.6
272,533 - -1.4
272,533 - -1.2
272,549 + -1.0
272,550 - +1.0
272,550 - -1.3
272,550 - +2.1
272,585 - -1.4
272,665 + +0.1
272,666 - -0.3
272,703 + +1.3
272,748 + +0.8
272,749 - -0.2
272,749 - +1.8
272,749 - -0.2
272,769 - +0.6
272,769 - +4.1
272,772 - +1.1
272,780 + +0.4
272,780 + -1.4
272,781 - +0.1
272,785 - -0.1
272,785 - -1.3
272,785 - +0.1
272,827 - ABIE40_RS27805 0.15 -1.0
272,882 + ABIE40_RS27805 0.39 -0.2
272,882 + ABIE40_RS27805 0.39 +2.9
272,882 + ABIE40_RS27805 0.39 +1.1
272,927 + ABIE40_RS27805 0.58 -0.1
272,927 + ABIE40_RS27805 0.58 -0.2
272,927 + ABIE40_RS27805 0.58 -2.3
272,928 - ABIE40_RS27805 0.59 -1.0
272,932 + ABIE40_RS27805 0.60 +0.2
273,020 + +1.1
273,041 + +0.8
273,078 + -1.5
273,078 + +0.4
273,079 - +2.0
273,079 - -2.2
273,100 + -1.7
273,101 - +0.7
273,135 + -3.9
273,144 - -0.9
273,144 - -0.5
273,288 + -2.9
273,289 - -2.2
273,289 - -2.2
273,289 - -0.2
273,289 - -0.3
273,289 - -1.9

Or see this region's nucleotide sequence