Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS24125

Experiment: R2A with 1-octen-3-ol 0.904549 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS24120 and ABIE40_RS24125 are separated by 18 nucleotidesABIE40_RS24125 and ABIE40_RS24130 are separated by 39 nucleotidesABIE40_RS24130 and ABIE40_RS24135 overlap by 4 nucleotides ABIE40_RS24120: ABIE40_RS24120 - ABC transporter substrate-binding protein, at 969,265 to 970,779 _RS24120 ABIE40_RS24125: ABIE40_RS24125 - ABC transporter ATP-binding protein, at 970,798 to 972,507 _RS24125 ABIE40_RS24130: ABIE40_RS24130 - ABC transporter permease, at 972,547 to 972,996 _RS24130 ABIE40_RS24135: ABIE40_RS24135 - ABC transporter permease, at 972,993 to 973,931 _RS24135 Position (kb) 970 971 972 973Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 969.815 kb on + strand, within ABIE40_RS24120at 969.815 kb on + strand, within ABIE40_RS24120at 969.818 kb on + strand, within ABIE40_RS24120at 969.819 kb on - strand, within ABIE40_RS24120at 969.819 kb on - strand, within ABIE40_RS24120at 969.821 kb on + strand, within ABIE40_RS24120at 969.822 kb on - strand, within ABIE40_RS24120at 969.822 kb on - strand, within ABIE40_RS24120at 969.822 kb on - strand, within ABIE40_RS24120at 969.840 kb on + strand, within ABIE40_RS24120at 969.842 kb on + strand, within ABIE40_RS24120at 969.842 kb on + strand, within ABIE40_RS24120at 969.842 kb on + strand, within ABIE40_RS24120at 969.842 kb on + strand, within ABIE40_RS24120at 969.842 kb on + strand, within ABIE40_RS24120at 969.843 kb on - strand, within ABIE40_RS24120at 969.843 kb on - strand, within ABIE40_RS24120at 969.843 kb on - strand, within ABIE40_RS24120at 969.858 kb on + strand, within ABIE40_RS24120at 970.186 kb on - strand, within ABIE40_RS24120at 970.397 kb on + strand, within ABIE40_RS24120at 970.398 kb on - strand, within ABIE40_RS24120at 970.398 kb on - strand, within ABIE40_RS24120at 970.514 kb on + strand, within ABIE40_RS24120at 970.514 kb on + strand, within ABIE40_RS24120at 970.514 kb on + strand, within ABIE40_RS24120at 970.514 kb on + strand, within ABIE40_RS24120at 970.514 kb on + strand, within ABIE40_RS24120at 970.514 kb on + strand, within ABIE40_RS24120at 970.515 kb on - strand, within ABIE40_RS24120at 970.515 kb on - strand, within ABIE40_RS24120at 970.515 kb on - strand, within ABIE40_RS24120at 970.515 kb on - strand, within ABIE40_RS24120at 970.515 kb on - strand, within ABIE40_RS24120at 970.515 kb on - strand, within ABIE40_RS24120at 970.515 kb on - strand, within ABIE40_RS24120at 970.604 kb on + strand, within ABIE40_RS24120at 970.604 kb on + strand, within ABIE40_RS24120at 970.604 kb on + strand, within ABIE40_RS24120at 970.605 kb on - strand, within ABIE40_RS24120at 970.605 kb on - strand, within ABIE40_RS24120at 970.605 kb on - strand, within ABIE40_RS24120at 970.605 kb on - strand, within ABIE40_RS24120at 970.713 kb on - strandat 970.799 kb on + strandat 970.799 kb on + strandat 970.799 kb on + strandat 970.800 kb on - strandat 970.800 kb on - strandat 970.800 kb on - strandat 970.800 kb on - strandat 970.800 kb on - strandat 970.804 kb on + strandat 970.804 kb on + strandat 970.804 kb on + strandat 970.805 kb on - strandat 970.805 kb on - strandat 970.805 kb on - strandat 970.805 kb on - strandat 970.805 kb on - strandat 970.918 kb on - strandat 970.918 kb on - strandat 970.919 kb on + strandat 970.919 kb on + strandat 970.919 kb on + strandat 970.919 kb on + strandat 970.919 kb on + strandat 970.920 kb on - strandat 970.920 kb on - strandat 970.982 kb on + strand, within ABIE40_RS24125at 970.982 kb on + strand, within ABIE40_RS24125at 970.982 kb on + strand, within ABIE40_RS24125at 970.982 kb on + strand, within ABIE40_RS24125at 970.982 kb on + strand, within ABIE40_RS24125at 970.982 kb on + strand, within ABIE40_RS24125at 970.982 kb on + strand, within ABIE40_RS24125at 970.982 kb on + strand, within ABIE40_RS24125at 970.982 kb on + strand, within ABIE40_RS24125at 970.983 kb on - strand, within ABIE40_RS24125at 970.983 kb on - strand, within ABIE40_RS24125at 970.983 kb on - strand, within ABIE40_RS24125at 970.983 kb on - strand, within ABIE40_RS24125at 971.361 kb on + strand, within ABIE40_RS24125at 971.361 kb on + strand, within ABIE40_RS24125at 971.361 kb on + strand, within ABIE40_RS24125at 971.362 kb on - strand, within ABIE40_RS24125at 971.363 kb on + strand, within ABIE40_RS24125at 971.363 kb on + strand, within ABIE40_RS24125at 971.363 kb on + strand, within ABIE40_RS24125at 971.363 kb on + strand, within ABIE40_RS24125at 971.364 kb on - strand, within ABIE40_RS24125at 971.364 kb on - strand, within ABIE40_RS24125at 971.364 kb on - strand, within ABIE40_RS24125at 971.364 kb on - strand, within ABIE40_RS24125at 971.364 kb on - strand, within ABIE40_RS24125at 971.364 kb on - strand, within ABIE40_RS24125at 971.753 kb on + strand, within ABIE40_RS24125at 971.995 kb on + strand, within ABIE40_RS24125at 971.996 kb on - strand, within ABIE40_RS24125at 972.059 kb on + strand, within ABIE40_RS24125at 972.059 kb on + strand, within ABIE40_RS24125at 972.060 kb on - strand, within ABIE40_RS24125at 972.060 kb on - strand, within ABIE40_RS24125at 972.060 kb on - strand, within ABIE40_RS24125at 972.146 kb on + strand, within ABIE40_RS24125at 972.515 kb on + strandat 972.515 kb on + strandat 972.515 kb on + strandat 972.546 kb on + strandat 972.548 kb on + strandat 972.548 kb on + strandat 972.548 kb on + strandat 972.548 kb on + strandat 972.548 kb on + strandat 972.549 kb on - strandat 972.549 kb on - strandat 972.549 kb on - strandat 972.549 kb on - strandat 972.549 kb on - strandat 972.549 kb on - strandat 972.549 kb on - strandat 972.549 kb on - strandat 972.549 kb on - strandat 972.549 kb on - strandat 972.852 kb on + strand, within ABIE40_RS24130at 972.860 kb on + strand, within ABIE40_RS24130at 972.860 kb on + strand, within ABIE40_RS24130at 972.996 kb on + strandat 972.996 kb on + strandat 972.996 kb on + strandat 972.996 kb on + strandat 972.997 kb on - strandat 972.997 kb on - strandat 973.097 kb on + strand, within ABIE40_RS24135at 973.097 kb on + strand, within ABIE40_RS24135at 973.097 kb on + strand, within ABIE40_RS24135at 973.097 kb on + strand, within ABIE40_RS24135at 973.097 kb on + strand, within ABIE40_RS24135at 973.097 kb on + strand, within ABIE40_RS24135at 973.097 kb on + strand, within ABIE40_RS24135at 973.097 kb on + strand, within ABIE40_RS24135at 973.097 kb on + strand, within ABIE40_RS24135at 973.097 kb on + strand, within ABIE40_RS24135at 973.097 kb on + strand, within ABIE40_RS24135at 973.097 kb on + strand, within ABIE40_RS24135at 973.097 kb on + strand, within ABIE40_RS24135at 973.097 kb on + strand, within ABIE40_RS24135at 973.098 kb on - strand, within ABIE40_RS24135at 973.098 kb on - strand, within ABIE40_RS24135at 973.098 kb on - strand, within ABIE40_RS24135at 973.098 kb on - strand, within ABIE40_RS24135at 973.098 kb on - strand, within ABIE40_RS24135at 973.098 kb on - strand, within ABIE40_RS24135at 973.098 kb on - strand, within ABIE40_RS24135at 973.098 kb on - strand, within ABIE40_RS24135at 973.098 kb on - strand, within ABIE40_RS24135at 973.098 kb on - strand, within ABIE40_RS24135at 973.099 kb on + strand, within ABIE40_RS24135at 973.099 kb on + strand, within ABIE40_RS24135at 973.099 kb on + strand, within ABIE40_RS24135at 973.099 kb on + strand, within ABIE40_RS24135at 973.099 kb on + strand, within ABIE40_RS24135at 973.099 kb on + strand, within ABIE40_RS24135at 973.100 kb on - strand, within ABIE40_RS24135at 973.100 kb on - strand, within ABIE40_RS24135at 973.100 kb on - strand, within ABIE40_RS24135at 973.224 kb on + strand, within ABIE40_RS24135at 973.440 kb on + strand, within ABIE40_RS24135at 973.441 kb on - strand, within ABIE40_RS24135at 973.441 kb on - strand, within ABIE40_RS24135

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.904549 mM
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969,815 + ABIE40_RS24120 0.36 +0.9
969,815 + ABIE40_RS24120 0.36 -0.8
969,818 + ABIE40_RS24120 0.37 +0.0
969,819 - ABIE40_RS24120 0.37 +0.2
969,819 - ABIE40_RS24120 0.37 +1.0
969,821 + ABIE40_RS24120 0.37 -1.4
969,822 - ABIE40_RS24120 0.37 +0.8
969,822 - ABIE40_RS24120 0.37 -0.1
969,822 - ABIE40_RS24120 0.37 -1.2
969,840 + ABIE40_RS24120 0.38 -0.2
969,842 + ABIE40_RS24120 0.38 -0.3
969,842 + ABIE40_RS24120 0.38 -0.6
969,842 + ABIE40_RS24120 0.38 +0.7
969,842 + ABIE40_RS24120 0.38 -2.3
969,842 + ABIE40_RS24120 0.38 -0.7
969,843 - ABIE40_RS24120 0.38 +0.4
969,843 - ABIE40_RS24120 0.38 -1.0
969,843 - ABIE40_RS24120 0.38 -2.6
969,858 + ABIE40_RS24120 0.39 +0.1
970,186 - ABIE40_RS24120 0.61 -1.0
970,397 + ABIE40_RS24120 0.75 +0.4
970,398 - ABIE40_RS24120 0.75 +2.7
970,398 - ABIE40_RS24120 0.75 +0.0
970,514 + ABIE40_RS24120 0.82 +0.4
970,514 + ABIE40_RS24120 0.82 +0.3
970,514 + ABIE40_RS24120 0.82 -1.0
970,514 + ABIE40_RS24120 0.82 -0.8
970,514 + ABIE40_RS24120 0.82 -0.4
970,514 + ABIE40_RS24120 0.82 +1.0
970,515 - ABIE40_RS24120 0.83 +0.4
970,515 - ABIE40_RS24120 0.83 +0.6
970,515 - ABIE40_RS24120 0.83 +0.4
970,515 - ABIE40_RS24120 0.83 -2.0
970,515 - ABIE40_RS24120 0.83 +0.4
970,515 - ABIE40_RS24120 0.83 +1.0
970,515 - ABIE40_RS24120 0.83 +0.0
970,604 + ABIE40_RS24120 0.88 -2.8
970,604 + ABIE40_RS24120 0.88 -0.2
970,604 + ABIE40_RS24120 0.88 +0.6
970,605 - ABIE40_RS24120 0.88 +0.2
970,605 - ABIE40_RS24120 0.88 +0.5
970,605 - ABIE40_RS24120 0.88 -0.6
970,605 - ABIE40_RS24120 0.88 -2.3
970,713 - -1.0
970,799 + +0.3
970,799 + -0.1
970,799 + +0.9
970,800 - +0.3
970,800 - +0.0
970,800 - +0.4
970,800 - +1.7
970,800 - +0.7
970,804 + +1.2
970,804 + +0.6
970,804 + -0.5
970,805 - +0.6
970,805 - +0.4
970,805 - -0.9
970,805 - +0.3
970,805 - +0.4
970,918 - -0.3
970,918 - +0.6
970,919 + -1.0
970,919 + +0.2
970,919 + +2.0
970,919 + -0.7
970,919 + +0.1
970,920 - +0.9
970,920 - -0.5
970,982 + ABIE40_RS24125 0.11 -1.0
970,982 + ABIE40_RS24125 0.11 -1.3
970,982 + ABIE40_RS24125 0.11 -0.3
970,982 + ABIE40_RS24125 0.11 -0.1
970,982 + ABIE40_RS24125 0.11 -0.4
970,982 + ABIE40_RS24125 0.11 -1.6
970,982 + ABIE40_RS24125 0.11 -1.4
970,982 + ABIE40_RS24125 0.11 -1.0
970,982 + ABIE40_RS24125 0.11 -0.4
970,983 - ABIE40_RS24125 0.11 -0.2
970,983 - ABIE40_RS24125 0.11 +0.3
970,983 - ABIE40_RS24125 0.11 +0.0
970,983 - ABIE40_RS24125 0.11 -0.8
971,361 + ABIE40_RS24125 0.33 +1.0
971,361 + ABIE40_RS24125 0.33 +0.0
971,361 + ABIE40_RS24125 0.33 +0.1
971,362 - ABIE40_RS24125 0.33 +3.4
971,363 + ABIE40_RS24125 0.33 +0.4
971,363 + ABIE40_RS24125 0.33 +0.5
971,363 + ABIE40_RS24125 0.33 -2.3
971,363 + ABIE40_RS24125 0.33 +0.1
971,364 - ABIE40_RS24125 0.33 +0.7
971,364 - ABIE40_RS24125 0.33 +0.2
971,364 - ABIE40_RS24125 0.33 +1.5
971,364 - ABIE40_RS24125 0.33 -0.4
971,364 - ABIE40_RS24125 0.33 +0.2
971,364 - ABIE40_RS24125 0.33 +1.4
971,753 + ABIE40_RS24125 0.56 +0.8
971,995 + ABIE40_RS24125 0.70 -1.0
971,996 - ABIE40_RS24125 0.70 -2.1
972,059 + ABIE40_RS24125 0.74 +0.1
972,059 + ABIE40_RS24125 0.74 +0.5
972,060 - ABIE40_RS24125 0.74 +0.7
972,060 - ABIE40_RS24125 0.74 +0.0
972,060 - ABIE40_RS24125 0.74 -1.3
972,146 + ABIE40_RS24125 0.79 -0.9
972,515 + -1.6
972,515 + -0.8
972,515 + +0.2
972,546 + +0.7
972,548 + +2.0
972,548 + +0.7
972,548 + -0.3
972,548 + -1.5
972,548 + +0.8
972,549 - -0.4
972,549 - -0.1
972,549 - +0.4
972,549 - -0.8
972,549 - -0.3
972,549 - +0.8
972,549 - +0.6
972,549 - -0.0
972,549 - +0.6
972,549 - +1.4
972,852 + ABIE40_RS24130 0.68 +0.9
972,860 + ABIE40_RS24130 0.70 +2.0
972,860 + ABIE40_RS24130 0.70 +0.3
972,996 + -1.1
972,996 + -1.6
972,996 + +0.4
972,996 + +0.4
972,997 - -0.8
972,997 - -0.8
973,097 + ABIE40_RS24135 0.11 -1.6
973,097 + ABIE40_RS24135 0.11 +1.4
973,097 + ABIE40_RS24135 0.11 -0.3
973,097 + ABIE40_RS24135 0.11 -0.3
973,097 + ABIE40_RS24135 0.11 +1.4
973,097 + ABIE40_RS24135 0.11 +1.6
973,097 + ABIE40_RS24135 0.11 +0.7
973,097 + ABIE40_RS24135 0.11 +1.0
973,097 + ABIE40_RS24135 0.11 +0.2
973,097 + ABIE40_RS24135 0.11 -0.3
973,097 + ABIE40_RS24135 0.11 +0.4
973,097 + ABIE40_RS24135 0.11 +1.0
973,097 + ABIE40_RS24135 0.11 +1.2
973,097 + ABIE40_RS24135 0.11 -0.3
973,098 - ABIE40_RS24135 0.11 +1.0
973,098 - ABIE40_RS24135 0.11 -3.1
973,098 - ABIE40_RS24135 0.11 -0.3
973,098 - ABIE40_RS24135 0.11 -0.3
973,098 - ABIE40_RS24135 0.11 -0.2
973,098 - ABIE40_RS24135 0.11 +0.9
973,098 - ABIE40_RS24135 0.11 -2.2
973,098 - ABIE40_RS24135 0.11 -3.3
973,098 - ABIE40_RS24135 0.11 -2.1
973,098 - ABIE40_RS24135 0.11 -0.1
973,099 + ABIE40_RS24135 0.11 -0.2
973,099 + ABIE40_RS24135 0.11 -0.0
973,099 + ABIE40_RS24135 0.11 -1.1
973,099 + ABIE40_RS24135 0.11 +0.4
973,099 + ABIE40_RS24135 0.11 -1.1
973,099 + ABIE40_RS24135 0.11 +0.1
973,100 - ABIE40_RS24135 0.11 -1.0
973,100 - ABIE40_RS24135 0.11 -1.0
973,100 - ABIE40_RS24135 0.11 +0.2
973,224 + ABIE40_RS24135 0.25 -1.6
973,440 + ABIE40_RS24135 0.48 +0.0
973,441 - ABIE40_RS24135 0.48 -1.6
973,441 - ABIE40_RS24135 0.48 +0.6

Or see this region's nucleotide sequence