Experiment: R2A with 1-octen-3-ol 0.904549 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS04845 and ABIE40_RS04850 are separated by 250 nucleotides ABIE40_RS04850 and ABIE40_RS04855 are separated by 31 nucleotides ABIE40_RS04855 and ABIE40_RS04860 are separated by 173 nucleotides
ABIE40_RS04845: ABIE40_RS04845 - S9 family peptidase, at 948,969 to 951,077
_RS04845
ABIE40_RS04850: ABIE40_RS04850 - DUF930 domain-containing protein, at 951,328 to 951,717
_RS04850
ABIE40_RS04855: ABIE40_RS04855 - Rrf2 family transcriptional regulator, at 951,749 to 952,192
_RS04855
ABIE40_RS04860: ABIE40_RS04860 - alpha/beta hydrolase, at 952,366 to 953,358
_RS04860
Position (kb) 951
952 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 950.374 kb on + strand, within ABIE40_RS04845 at 950.375 kb on - strand, within ABIE40_RS04845 at 950.375 kb on - strand, within ABIE40_RS04845 at 950.459 kb on - strand, within ABIE40_RS04845 at 950.587 kb on + strand, within ABIE40_RS04845 at 950.587 kb on + strand, within ABIE40_RS04845 at 950.587 kb on + strand, within ABIE40_RS04845 at 950.588 kb on - strand, within ABIE40_RS04845 at 950.588 kb on - strand, within ABIE40_RS04845 at 950.644 kb on + strand, within ABIE40_RS04845 at 950.644 kb on + strand, within ABIE40_RS04845 at 950.644 kb on + strand, within ABIE40_RS04845 at 950.644 kb on + strand, within ABIE40_RS04845 at 950.644 kb on + strand, within ABIE40_RS04845 at 950.645 kb on - strand, within ABIE40_RS04845 at 950.645 kb on - strand, within ABIE40_RS04845 at 950.734 kb on + strand, within ABIE40_RS04845 at 950.735 kb on - strand, within ABIE40_RS04845 at 950.735 kb on - strand, within ABIE40_RS04845 at 950.735 kb on - strand, within ABIE40_RS04845 at 950.735 kb on - strand, within ABIE40_RS04845 at 950.735 kb on - strand, within ABIE40_RS04845 at 950.735 kb on - strand, within ABIE40_RS04845 at 950.888 kb on + strand at 950.888 kb on + strand at 950.889 kb on - strand at 950.889 kb on - strand at 950.889 kb on - strand at 950.889 kb on - strand at 950.889 kb on - strand at 950.889 kb on - strand at 950.889 kb on - strand at 950.889 kb on - strand at 950.890 kb on + strand at 950.890 kb on + strand at 950.890 kb on + strand at 950.890 kb on + strand at 950.890 kb on + strand at 950.890 kb on + strand at 950.890 kb on + strand at 950.890 kb on + strand at 950.967 kb on - strand at 950.986 kb on + strand at 950.987 kb on - strand at 951.116 kb on + strand at 951.116 kb on + strand at 951.116 kb on + strand at 951.116 kb on + strand at 951.116 kb on + strand at 951.117 kb on - strand at 951.117 kb on - strand at 951.117 kb on - strand at 951.117 kb on - strand at 951.163 kb on + strand at 951.164 kb on - strand at 951.164 kb on - strand at 951.174 kb on + strand at 951.174 kb on + strand at 951.219 kb on + strand at 951.310 kb on + strand at 951.325 kb on + strand at 951.326 kb on - strand at 951.520 kb on + strand, within ABIE40_RS04850 at 951.520 kb on + strand, within ABIE40_RS04850 at 951.598 kb on + strand, within ABIE40_RS04850 at 951.599 kb on - strand, within ABIE40_RS04850 at 951.610 kb on + strand, within ABIE40_RS04850 at 951.611 kb on - strand, within ABIE40_RS04850 at 951.611 kb on - strand, within ABIE40_RS04850 at 951.688 kb on - strand at 951.688 kb on - strand at 951.688 kb on - strand at 951.688 kb on - strand at 951.700 kb on + strand at 951.700 kb on + strand at 951.700 kb on + strand at 951.701 kb on - strand at 951.701 kb on - strand at 951.701 kb on - strand at 951.703 kb on + strand at 951.703 kb on + strand at 951.704 kb on - strand at 951.704 kb on - strand at 951.704 kb on - strand at 951.704 kb on - strand at 951.704 kb on - strand at 951.704 kb on - strand at 951.709 kb on + strand at 951.709 kb on + strand at 951.730 kb on - strand at 951.740 kb on + strand at 951.740 kb on + strand at 951.741 kb on - strand at 951.741 kb on - strand at 952.144 kb on + strand, within ABIE40_RS04855 at 952.144 kb on + strand, within ABIE40_RS04855 at 952.144 kb on + strand, within ABIE40_RS04855 at 952.144 kb on + strand, within ABIE40_RS04855 at 952.144 kb on + strand, within ABIE40_RS04855 at 952.145 kb on - strand, within ABIE40_RS04855 at 952.145 kb on - strand, within ABIE40_RS04855 at 952.145 kb on - strand, within ABIE40_RS04855 at 952.301 kb on + strand at 952.323 kb on + strand at 952.324 kb on - strand at 952.324 kb on - strand at 952.324 kb on - strand at 952.324 kb on - strand at 952.324 kb on - strand at 952.591 kb on + strand, within ABIE40_RS04860 at 952.591 kb on + strand, within ABIE40_RS04860 at 952.591 kb on + strand, within ABIE40_RS04860 at 952.592 kb on - strand, within ABIE40_RS04860 at 952.592 kb on - strand, within ABIE40_RS04860 at 952.592 kb on - strand, within ABIE40_RS04860 at 952.592 kb on - strand, within ABIE40_RS04860 at 952.592 kb on - strand, within ABIE40_RS04860 at 952.592 kb on - strand, within ABIE40_RS04860
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.904549 mM remove 950,374 + ABIE40_RS04845 0.67 -1.1 950,375 - ABIE40_RS04845 0.67 +1.0 950,375 - ABIE40_RS04845 0.67 +0.1 950,459 - ABIE40_RS04845 0.71 -0.3 950,587 + ABIE40_RS04845 0.77 -1.4 950,587 + ABIE40_RS04845 0.77 -2.9 950,587 + ABIE40_RS04845 0.77 -1.9 950,588 - ABIE40_RS04845 0.77 -0.9 950,588 - ABIE40_RS04845 0.77 -2.4 950,644 + ABIE40_RS04845 0.79 -3.4 950,644 + ABIE40_RS04845 0.79 -1.9 950,644 + ABIE40_RS04845 0.79 +0.8 950,644 + ABIE40_RS04845 0.79 -1.4 950,644 + ABIE40_RS04845 0.79 -0.3 950,645 - ABIE40_RS04845 0.79 -1.6 950,645 - ABIE40_RS04845 0.79 -1.6 950,734 + ABIE40_RS04845 0.84 -0.4 950,735 - ABIE40_RS04845 0.84 -1.7 950,735 - ABIE40_RS04845 0.84 -1.5 950,735 - ABIE40_RS04845 0.84 -2.5 950,735 - ABIE40_RS04845 0.84 -3.4 950,735 - ABIE40_RS04845 0.84 +1.7 950,735 - ABIE40_RS04845 0.84 -2.1 950,888 + +0.7 950,888 + -1.5 950,889 - -2.0 950,889 - -3.0 950,889 - +0.3 950,889 - -2.8 950,889 - -0.5 950,889 - -1.7 950,889 - -2.5 950,889 - +0.4 950,890 + -0.2 950,890 + +0.1 950,890 + -1.9 950,890 + -0.9 950,890 + +0.1 950,890 + -2.9 950,890 + -2.7 950,890 + -2.6 950,967 - +0.1 950,986 + -1.6 950,987 - -0.9 951,116 + -1.5 951,116 + -3.6 951,116 + -1.6 951,116 + -0.9 951,116 + +0.9 951,117 - +1.0 951,117 - -1.9 951,117 - -3.0 951,117 - +1.1 951,163 + -1.6 951,164 - -1.7 951,164 - -2.5 951,174 + -1.9 951,174 + -0.7 951,219 + +0.5 951,310 + -0.1 951,325 + +0.1 951,326 - -2.3 951,520 + ABIE40_RS04850 0.49 +1.0 951,520 + ABIE40_RS04850 0.49 +0.3 951,598 + ABIE40_RS04850 0.69 +0.4 951,599 - ABIE40_RS04850 0.69 -0.3 951,610 + ABIE40_RS04850 0.72 +0.8 951,611 - ABIE40_RS04850 0.73 -1.1 951,611 - ABIE40_RS04850 0.73 -0.5 951,688 - +1.7 951,688 - -1.7 951,688 - +0.6 951,688 - -1.9 951,700 + -0.2 951,700 + -2.2 951,700 + -0.8 951,701 - -1.6 951,701 - +1.3 951,701 - +0.5 951,703 + +0.7 951,703 + -1.7 951,704 - -1.0 951,704 - +0.7 951,704 - -0.9 951,704 - -2.1 951,704 - -0.9 951,704 - -1.5 951,709 + +1.7 951,709 + -0.1 951,730 - -1.2 951,740 + +1.7 951,740 + -0.3 951,741 - +1.7 951,741 - -0.8 952,144 + ABIE40_RS04855 0.89 +0.4 952,144 + ABIE40_RS04855 0.89 +0.9 952,144 + ABIE40_RS04855 0.89 +0.7 952,144 + ABIE40_RS04855 0.89 -0.4 952,144 + ABIE40_RS04855 0.89 -2.2 952,145 - ABIE40_RS04855 0.89 +0.4 952,145 - ABIE40_RS04855 0.89 +0.3 952,145 - ABIE40_RS04855 0.89 -1.2 952,301 + -3.3 952,323 + -0.5 952,324 - +1.1 952,324 - -0.3 952,324 - +0.7 952,324 - -0.1 952,324 - -0.1 952,591 + ABIE40_RS04860 0.23 -2.0 952,591 + ABIE40_RS04860 0.23 -0.3 952,591 + ABIE40_RS04860 0.23 +2.2 952,592 - ABIE40_RS04860 0.23 -2.3 952,592 - ABIE40_RS04860 0.23 +0.4 952,592 - ABIE40_RS04860 0.23 +1.5 952,592 - ABIE40_RS04860 0.23 +1.7 952,592 - ABIE40_RS04860 0.23 -0.6 952,592 - ABIE40_RS04860 0.23 -0.7
Or see this region's nucleotide sequence