Experiment: R2A with 1-octen-3-ol 0.904549 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS03350 and ABIE40_RS03355 are separated by 9 nucleotides ABIE40_RS03355 and ABIE40_RS03360 are separated by 1 nucleotides ABIE40_RS03360 and ABIE40_RS03365 overlap by 4 nucleotides ABIE40_RS03365 and ABIE40_RS03370 are separated by 30 nucleotides
ABIE40_RS03350: ABIE40_RS03350 - ABC transporter permease subunit, at 668,220 to 669,224
_RS03350
ABIE40_RS03355: ABIE40_RS03355 - ABC transporter permease subunit, at 669,234 to 670,124
_RS03355
ABIE40_RS03360: ABIE40_RS03360 - ABC transporter ATP-binding protein, at 670,126 to 670,965
_RS03360
ABIE40_RS03365: ABIE40_RS03365 - dipeptide ABC transporter ATP-binding protein, at 670,962 to 671,795
_RS03365
ABIE40_RS03370: ABIE40_RS03370 - gluconokinase, at 671,826 to 672,359
_RS03370
Position (kb) 670
671 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 669.192 kb on + strand at 669.192 kb on + strand at 669.192 kb on + strand at 669.192 kb on + strand at 669.193 kb on - strand at 669.193 kb on - strand at 669.193 kb on - strand at 669.193 kb on - strand at 669.193 kb on - strand at 669.201 kb on - strand at 669.212 kb on + strand at 669.212 kb on + strand at 669.213 kb on - strand at 669.222 kb on + strand at 669.223 kb on - strand at 669.244 kb on + strand at 669.244 kb on + strand at 669.245 kb on - strand at 669.245 kb on - strand at 669.245 kb on - strand at 669.248 kb on + strand at 669.249 kb on - strand at 669.249 kb on - strand at 669.288 kb on + strand at 669.291 kb on + strand at 669.291 kb on + strand at 669.291 kb on + strand at 669.291 kb on + strand at 669.792 kb on + strand, within ABIE40_RS03355 at 669.792 kb on + strand, within ABIE40_RS03355 at 669.792 kb on + strand, within ABIE40_RS03355 at 669.792 kb on + strand, within ABIE40_RS03355 at 669.793 kb on - strand, within ABIE40_RS03355 at 669.793 kb on - strand, within ABIE40_RS03355 at 669.793 kb on - strand, within ABIE40_RS03355 at 669.793 kb on - strand, within ABIE40_RS03355 at 669.793 kb on - strand, within ABIE40_RS03355 at 669.793 kb on - strand, within ABIE40_RS03355 at 669.793 kb on - strand, within ABIE40_RS03355 at 669.793 kb on - strand, within ABIE40_RS03355 at 670.295 kb on + strand, within ABIE40_RS03360 at 670.295 kb on + strand, within ABIE40_RS03360 at 670.543 kb on - strand, within ABIE40_RS03360 at 670.807 kb on + strand, within ABIE40_RS03360 at 670.807 kb on + strand, within ABIE40_RS03360 at 670.807 kb on + strand, within ABIE40_RS03360 at 670.807 kb on + strand, within ABIE40_RS03360 at 670.808 kb on - strand, within ABIE40_RS03360 at 670.808 kb on - strand, within ABIE40_RS03360 at 670.808 kb on - strand, within ABIE40_RS03360 at 670.808 kb on - strand, within ABIE40_RS03360 at 670.808 kb on - strand, within ABIE40_RS03360 at 670.870 kb on + strand, within ABIE40_RS03360 at 670.870 kb on + strand, within ABIE40_RS03360 at 670.870 kb on + strand, within ABIE40_RS03360 at 670.870 kb on + strand, within ABIE40_RS03360 at 670.870 kb on + strand, within ABIE40_RS03360 at 670.870 kb on + strand, within ABIE40_RS03360 at 670.872 kb on + strand, within ABIE40_RS03360 at 670.872 kb on + strand, within ABIE40_RS03360 at 670.872 kb on + strand, within ABIE40_RS03360 at 670.872 kb on + strand, within ABIE40_RS03360 at 670.872 kb on + strand, within ABIE40_RS03360 at 670.873 kb on - strand, within ABIE40_RS03360 at 670.873 kb on - strand, within ABIE40_RS03360 at 670.873 kb on - strand, within ABIE40_RS03360 at 670.873 kb on - strand, within ABIE40_RS03360 at 670.873 kb on - strand, within ABIE40_RS03360 at 670.989 kb on - strand at 670.989 kb on - strand at 670.989 kb on - strand at 671.001 kb on + strand at 671.002 kb on - strand at 671.002 kb on - strand at 671.004 kb on + strand at 671.004 kb on + strand at 671.004 kb on + strand at 671.004 kb on + strand at 671.004 kb on + strand at 671.004 kb on + strand at 671.005 kb on - strand at 671.005 kb on - strand at 671.005 kb on - strand at 671.005 kb on - strand at 671.005 kb on - strand at 671.005 kb on - strand at 671.239 kb on + strand, within ABIE40_RS03365 at 671.239 kb on + strand, within ABIE40_RS03365 at 671.239 kb on + strand, within ABIE40_RS03365 at 671.239 kb on + strand, within ABIE40_RS03365 at 671.239 kb on + strand, within ABIE40_RS03365 at 671.262 kb on + strand, within ABIE40_RS03365 at 671.262 kb on + strand, within ABIE40_RS03365 at 671.262 kb on + strand, within ABIE40_RS03365 at 671.263 kb on - strand, within ABIE40_RS03365 at 671.330 kb on + strand, within ABIE40_RS03365 at 671.330 kb on + strand, within ABIE40_RS03365 at 671.409 kb on + strand, within ABIE40_RS03365 at 671.580 kb on + strand, within ABIE40_RS03365 at 671.580 kb on + strand, within ABIE40_RS03365 at 671.580 kb on + strand, within ABIE40_RS03365 at 671.580 kb on + strand, within ABIE40_RS03365 at 671.581 kb on - strand, within ABIE40_RS03365 at 671.581 kb on - strand, within ABIE40_RS03365 at 671.581 kb on - strand, within ABIE40_RS03365 at 671.581 kb on - strand, within ABIE40_RS03365 at 671.581 kb on - strand, within ABIE40_RS03365 at 671.581 kb on - strand, within ABIE40_RS03365 at 671.581 kb on - strand, within ABIE40_RS03365 at 671.616 kb on + strand, within ABIE40_RS03365 at 671.617 kb on - strand, within ABIE40_RS03365 at 671.617 kb on - strand, within ABIE40_RS03365 at 671.617 kb on - strand, within ABIE40_RS03365 at 671.643 kb on + strand, within ABIE40_RS03365 at 671.643 kb on + strand, within ABIE40_RS03365 at 671.643 kb on + strand, within ABIE40_RS03365 at 671.643 kb on + strand, within ABIE40_RS03365 at 671.644 kb on - strand, within ABIE40_RS03365 at 671.644 kb on - strand, within ABIE40_RS03365 at 671.644 kb on - strand, within ABIE40_RS03365 at 671.644 kb on - strand, within ABIE40_RS03365 at 671.664 kb on + strand, within ABIE40_RS03365 at 671.706 kb on + strand, within ABIE40_RS03365 at 671.706 kb on + strand, within ABIE40_RS03365 at 671.706 kb on + strand, within ABIE40_RS03365 at 671.706 kb on + strand, within ABIE40_RS03365 at 671.706 kb on + strand, within ABIE40_RS03365 at 671.706 kb on + strand, within ABIE40_RS03365 at 671.706 kb on + strand, within ABIE40_RS03365 at 671.706 kb on + strand, within ABIE40_RS03365 at 671.706 kb on + strand, within ABIE40_RS03365 at 671.706 kb on + strand, within ABIE40_RS03365 at 671.707 kb on - strand, within ABIE40_RS03365 at 671.707 kb on - strand, within ABIE40_RS03365 at 671.707 kb on - strand, within ABIE40_RS03365 at 671.707 kb on - strand, within ABIE40_RS03365 at 671.707 kb on - strand, within ABIE40_RS03365 at 671.707 kb on - strand, within ABIE40_RS03365 at 671.707 kb on - strand, within ABIE40_RS03365 at 671.707 kb on - strand, within ABIE40_RS03365 at 671.708 kb on + strand, within ABIE40_RS03365 at 671.708 kb on + strand, within ABIE40_RS03365 at 671.708 kb on + strand, within ABIE40_RS03365 at 671.709 kb on - strand, within ABIE40_RS03365 at 671.709 kb on - strand, within ABIE40_RS03365 at 671.709 kb on - strand, within ABIE40_RS03365 at 671.709 kb on - strand, within ABIE40_RS03365 at 671.750 kb on + strand at 671.793 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.904549 mM remove 669,192 + -0.7 669,192 + -0.4 669,192 + -0.5 669,192 + -0.7 669,193 - -0.3 669,193 - -0.3 669,193 - +0.3 669,193 - -0.6 669,193 - -0.1 669,201 - +0.9 669,212 + +1.8 669,212 + +0.9 669,213 - -0.0 669,222 + +0.0 669,223 - -0.3 669,244 + -0.7 669,244 + -2.6 669,245 - -1.5 669,245 - -0.4 669,245 - -0.5 669,248 + -2.5 669,249 - -1.9 669,249 - -1.3 669,288 + -0.4 669,291 + +0.7 669,291 + -0.8 669,291 + -0.4 669,291 + +0.7 669,792 + ABIE40_RS03355 0.63 -0.1 669,792 + ABIE40_RS03355 0.63 -2.7 669,792 + ABIE40_RS03355 0.63 -2.8 669,792 + ABIE40_RS03355 0.63 -0.0 669,793 - ABIE40_RS03355 0.63 -0.3 669,793 - ABIE40_RS03355 0.63 -1.7 669,793 - ABIE40_RS03355 0.63 -0.1 669,793 - ABIE40_RS03355 0.63 -0.4 669,793 - ABIE40_RS03355 0.63 -0.4 669,793 - ABIE40_RS03355 0.63 +0.2 669,793 - ABIE40_RS03355 0.63 -0.7 669,793 - ABIE40_RS03355 0.63 +0.7 670,295 + ABIE40_RS03360 0.20 +0.2 670,295 + ABIE40_RS03360 0.20 +0.4 670,543 - ABIE40_RS03360 0.50 -1.8 670,807 + ABIE40_RS03360 0.81 +0.2 670,807 + ABIE40_RS03360 0.81 -1.3 670,807 + ABIE40_RS03360 0.81 +0.6 670,807 + ABIE40_RS03360 0.81 +0.9 670,808 - ABIE40_RS03360 0.81 -0.4 670,808 - ABIE40_RS03360 0.81 +0.1 670,808 - ABIE40_RS03360 0.81 -0.3 670,808 - ABIE40_RS03360 0.81 -1.3 670,808 - ABIE40_RS03360 0.81 +2.1 670,870 + ABIE40_RS03360 0.89 +1.3 670,870 + ABIE40_RS03360 0.89 -1.0 670,870 + ABIE40_RS03360 0.89 -0.8 670,870 + ABIE40_RS03360 0.89 -2.1 670,870 + ABIE40_RS03360 0.89 -0.2 670,870 + ABIE40_RS03360 0.89 +0.5 670,872 + ABIE40_RS03360 0.89 -0.0 670,872 + ABIE40_RS03360 0.89 +0.7 670,872 + ABIE40_RS03360 0.89 +0.8 670,872 + ABIE40_RS03360 0.89 -0.0 670,872 + ABIE40_RS03360 0.89 -1.3 670,873 - ABIE40_RS03360 0.89 -0.1 670,873 - ABIE40_RS03360 0.89 -0.7 670,873 - ABIE40_RS03360 0.89 -0.9 670,873 - ABIE40_RS03360 0.89 +0.1 670,873 - ABIE40_RS03360 0.89 -1.6 670,989 - +0.7 670,989 - +0.3 670,989 - -0.3 671,001 + -0.1 671,002 - -0.8 671,002 - -1.7 671,004 + -0.4 671,004 + -2.6 671,004 + +0.5 671,004 + -0.9 671,004 + +0.2 671,004 + +0.6 671,005 - -3.0 671,005 - -0.9 671,005 - -1.1 671,005 - -1.3 671,005 - -0.5 671,005 - -0.9 671,239 + ABIE40_RS03365 0.33 +0.1 671,239 + ABIE40_RS03365 0.33 +0.3 671,239 + ABIE40_RS03365 0.33 -0.0 671,239 + ABIE40_RS03365 0.33 +0.3 671,239 + ABIE40_RS03365 0.33 +0.0 671,262 + ABIE40_RS03365 0.36 +1.4 671,262 + ABIE40_RS03365 0.36 -0.9 671,262 + ABIE40_RS03365 0.36 +0.7 671,263 - ABIE40_RS03365 0.36 +1.3 671,330 + ABIE40_RS03365 0.44 -0.5 671,330 + ABIE40_RS03365 0.44 -0.4 671,409 + ABIE40_RS03365 0.54 -0.7 671,580 + ABIE40_RS03365 0.74 +0.3 671,580 + ABIE40_RS03365 0.74 -0.5 671,580 + ABIE40_RS03365 0.74 +0.4 671,580 + ABIE40_RS03365 0.74 -1.7 671,581 - ABIE40_RS03365 0.74 +0.7 671,581 - ABIE40_RS03365 0.74 -1.0 671,581 - ABIE40_RS03365 0.74 +1.5 671,581 - ABIE40_RS03365 0.74 +0.7 671,581 - ABIE40_RS03365 0.74 -1.3 671,581 - ABIE40_RS03365 0.74 +0.4 671,581 - ABIE40_RS03365 0.74 -1.7 671,616 + ABIE40_RS03365 0.78 +0.1 671,617 - ABIE40_RS03365 0.79 -0.6 671,617 - ABIE40_RS03365 0.79 +0.6 671,617 - ABIE40_RS03365 0.79 -2.3 671,643 + ABIE40_RS03365 0.82 +0.5 671,643 + ABIE40_RS03365 0.82 +0.5 671,643 + ABIE40_RS03365 0.82 +0.3 671,643 + ABIE40_RS03365 0.82 +0.4 671,644 - ABIE40_RS03365 0.82 -0.3 671,644 - ABIE40_RS03365 0.82 -1.4 671,644 - ABIE40_RS03365 0.82 +0.0 671,644 - ABIE40_RS03365 0.82 -0.4 671,664 + ABIE40_RS03365 0.84 +1.3 671,706 + ABIE40_RS03365 0.89 +1.4 671,706 + ABIE40_RS03365 0.89 -0.5 671,706 + ABIE40_RS03365 0.89 -0.8 671,706 + ABIE40_RS03365 0.89 +0.8 671,706 + ABIE40_RS03365 0.89 +0.9 671,706 + ABIE40_RS03365 0.89 +0.4 671,706 + ABIE40_RS03365 0.89 +0.4 671,706 + ABIE40_RS03365 0.89 +0.1 671,706 + ABIE40_RS03365 0.89 -0.5 671,706 + ABIE40_RS03365 0.89 +0.2 671,707 - ABIE40_RS03365 0.89 -1.1 671,707 - ABIE40_RS03365 0.89 +0.7 671,707 - ABIE40_RS03365 0.89 -2.7 671,707 - ABIE40_RS03365 0.89 -0.3 671,707 - ABIE40_RS03365 0.89 -1.8 671,707 - ABIE40_RS03365 0.89 -2.0 671,707 - ABIE40_RS03365 0.89 -0.2 671,707 - ABIE40_RS03365 0.89 +0.0 671,708 + ABIE40_RS03365 0.89 +0.2 671,708 + ABIE40_RS03365 0.89 +1.2 671,708 + ABIE40_RS03365 0.89 +0.6 671,709 - ABIE40_RS03365 0.90 -1.1 671,709 - ABIE40_RS03365 0.90 +0.9 671,709 - ABIE40_RS03365 0.90 +0.2 671,709 - ABIE40_RS03365 0.90 -0.7 671,750 + -1.0 671,793 + +1.4
Or see this region's nucleotide sequence