Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS30835

Experiment: R2A with 1-octen-3-ol 0.904549 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS30830 and ABIE40_RS30835 overlap by 4 nucleotidesABIE40_RS30835 and ABIE40_RS30840 are separated by 298 nucleotides ABIE40_RS30830: ABIE40_RS30830 - cytochrome c oxidase subunit I, at 856,724 to 858,634 _RS30830 ABIE40_RS30835: ABIE40_RS30835 - cytochrome c oxidase subunit 3, at 858,631 to 859,233 _RS30835 ABIE40_RS30840: ABIE40_RS30840 - cytochrome c oxidase assembly protein, at 859,532 to 860,419 _RS30840 Position (kb) 858 859 860Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 857.832 kb on + strand, within ABIE40_RS30830at 857.832 kb on + strand, within ABIE40_RS30830at 857.832 kb on - strand, within ABIE40_RS30830at 857.833 kb on - strand, within ABIE40_RS30830at 857.915 kb on - strand, within ABIE40_RS30830at 857.915 kb on - strand, within ABIE40_RS30830at 857.918 kb on + strand, within ABIE40_RS30830at 857.918 kb on + strand, within ABIE40_RS30830at 857.918 kb on + strand, within ABIE40_RS30830at 857.919 kb on - strand, within ABIE40_RS30830at 857.919 kb on - strand, within ABIE40_RS30830at 857.919 kb on - strand, within ABIE40_RS30830at 857.919 kb on - strand, within ABIE40_RS30830at 857.943 kb on - strand, within ABIE40_RS30830at 857.986 kb on - strand, within ABIE40_RS30830at 857.986 kb on - strand, within ABIE40_RS30830at 857.987 kb on + strand, within ABIE40_RS30830at 857.987 kb on + strand, within ABIE40_RS30830at 857.988 kb on - strand, within ABIE40_RS30830at 857.988 kb on - strand, within ABIE40_RS30830at 857.991 kb on - strand, within ABIE40_RS30830at 858.094 kb on + strand, within ABIE40_RS30830at 858.094 kb on + strand, within ABIE40_RS30830at 858.095 kb on - strand, within ABIE40_RS30830at 858.095 kb on - strand, within ABIE40_RS30830at 858.128 kb on + strand, within ABIE40_RS30830at 858.129 kb on - strand, within ABIE40_RS30830at 858.129 kb on - strand, within ABIE40_RS30830at 858.129 kb on - strand, within ABIE40_RS30830at 858.134 kb on + strand, within ABIE40_RS30830at 858.134 kb on + strand, within ABIE40_RS30830at 858.134 kb on + strand, within ABIE40_RS30830at 858.135 kb on - strand, within ABIE40_RS30830at 858.135 kb on - strand, within ABIE40_RS30830at 858.135 kb on - strand, within ABIE40_RS30830at 858.164 kb on - strand, within ABIE40_RS30830at 858.164 kb on - strand, within ABIE40_RS30830at 858.334 kb on + strand, within ABIE40_RS30830at 858.335 kb on - strand, within ABIE40_RS30830at 858.335 kb on - strand, within ABIE40_RS30830at 858.507 kb on + strandat 858.720 kb on + strand, within ABIE40_RS30835at 858.721 kb on - strand, within ABIE40_RS30835at 858.764 kb on - strand, within ABIE40_RS30835at 858.769 kb on + strand, within ABIE40_RS30835at 858.831 kb on + strand, within ABIE40_RS30835at 858.867 kb on - strand, within ABIE40_RS30835at 859.165 kb on + strand, within ABIE40_RS30835at 859.166 kb on - strand, within ABIE40_RS30835at 859.201 kb on + strandat 859.202 kb on - strandat 859.254 kb on + strandat 859.254 kb on + strandat 859.255 kb on - strandat 859.271 kb on - strandat 859.357 kb on + strandat 859.502 kb on - strandat 859.673 kb on + strand, within ABIE40_RS30840at 859.673 kb on + strand, within ABIE40_RS30840at 859.745 kb on + strand, within ABIE40_RS30840at 859.843 kb on + strand, within ABIE40_RS30840at 859.843 kb on + strand, within ABIE40_RS30840at 859.843 kb on + strand, within ABIE40_RS30840at 859.843 kb on + strand, within ABIE40_RS30840at 859.844 kb on - strand, within ABIE40_RS30840at 860.138 kb on + strand, within ABIE40_RS30840at 860.138 kb on + strand, within ABIE40_RS30840at 860.141 kb on - strand, within ABIE40_RS30840at 860.141 kb on - strand, within ABIE40_RS30840at 860.141 kb on - strand, within ABIE40_RS30840at 860.191 kb on + strand, within ABIE40_RS30840at 860.191 kb on + strand, within ABIE40_RS30840at 860.191 kb on + strand, within ABIE40_RS30840at 860.191 kb on + strand, within ABIE40_RS30840at 860.191 kb on + strand, within ABIE40_RS30840at 860.191 kb on + strand, within ABIE40_RS30840at 860.191 kb on + strand, within ABIE40_RS30840at 860.191 kb on + strand, within ABIE40_RS30840at 860.192 kb on - strand, within ABIE40_RS30840at 860.192 kb on - strand, within ABIE40_RS30840at 860.192 kb on - strand, within ABIE40_RS30840at 860.192 kb on - strand, within ABIE40_RS30840at 860.192 kb on - strand, within ABIE40_RS30840at 860.192 kb on - strand, within ABIE40_RS30840

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.904549 mM
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857,832 + ABIE40_RS30830 0.58 -0.9
857,832 + ABIE40_RS30830 0.58 -1.9
857,832 - ABIE40_RS30830 0.58 -2.1
857,833 - ABIE40_RS30830 0.58 -0.7
857,915 - ABIE40_RS30830 0.62 +0.0
857,915 - ABIE40_RS30830 0.62 +0.8
857,918 + ABIE40_RS30830 0.62 -0.6
857,918 + ABIE40_RS30830 0.62 +1.4
857,918 + ABIE40_RS30830 0.62 +0.8
857,919 - ABIE40_RS30830 0.63 +1.6
857,919 - ABIE40_RS30830 0.63 -0.1
857,919 - ABIE40_RS30830 0.63 +0.1
857,919 - ABIE40_RS30830 0.63 -2.3
857,943 - ABIE40_RS30830 0.64 -0.4
857,986 - ABIE40_RS30830 0.66 +1.4
857,986 - ABIE40_RS30830 0.66 -0.0
857,987 + ABIE40_RS30830 0.66 +0.6
857,987 + ABIE40_RS30830 0.66 +0.0
857,988 - ABIE40_RS30830 0.66 -1.3
857,988 - ABIE40_RS30830 0.66 -0.8
857,991 - ABIE40_RS30830 0.66 +0.8
858,094 + ABIE40_RS30830 0.72 -1.4
858,094 + ABIE40_RS30830 0.72 +0.1
858,095 - ABIE40_RS30830 0.72 +0.8
858,095 - ABIE40_RS30830 0.72 -2.1
858,128 + ABIE40_RS30830 0.73 -0.4
858,129 - ABIE40_RS30830 0.74 +1.4
858,129 - ABIE40_RS30830 0.74 +1.4
858,129 - ABIE40_RS30830 0.74 +0.4
858,134 + ABIE40_RS30830 0.74 +1.4
858,134 + ABIE40_RS30830 0.74 -1.6
858,134 + ABIE40_RS30830 0.74 -0.1
858,135 - ABIE40_RS30830 0.74 +1.9
858,135 - ABIE40_RS30830 0.74 -0.2
858,135 - ABIE40_RS30830 0.74 +4.0
858,164 - ABIE40_RS30830 0.75 +2.4
858,164 - ABIE40_RS30830 0.75 -0.0
858,334 + ABIE40_RS30830 0.84 -0.8
858,335 - ABIE40_RS30830 0.84 -2.0
858,335 - ABIE40_RS30830 0.84 -1.1
858,507 + -1.9
858,720 + ABIE40_RS30835 0.15 +1.6
858,721 - ABIE40_RS30835 0.15 +0.0
858,764 - ABIE40_RS30835 0.22 -1.0
858,769 + ABIE40_RS30835 0.23 -0.9
858,831 + ABIE40_RS30835 0.33 -1.0
858,867 - ABIE40_RS30835 0.39 +1.4
859,165 + ABIE40_RS30835 0.89 -2.4
859,166 - ABIE40_RS30835 0.89 -1.0
859,201 + -1.1
859,202 - -0.8
859,254 + -2.0
859,254 + -0.2
859,255 - -2.0
859,271 - -0.0
859,357 + +1.6
859,502 - +0.1
859,673 + ABIE40_RS30840 0.16 -0.4
859,673 + ABIE40_RS30840 0.16 -0.6
859,745 + ABIE40_RS30840 0.24 +0.8
859,843 + ABIE40_RS30840 0.35 -2.4
859,843 + ABIE40_RS30840 0.35 -1.0
859,843 + ABIE40_RS30840 0.35 -1.7
859,843 + ABIE40_RS30840 0.35 +0.0
859,844 - ABIE40_RS30840 0.35 -0.4
860,138 + ABIE40_RS30840 0.68 +2.6
860,138 + ABIE40_RS30840 0.68 -1.0
860,141 - ABIE40_RS30840 0.69 +0.3
860,141 - ABIE40_RS30840 0.69 -1.4
860,141 - ABIE40_RS30840 0.69 +1.8
860,191 + ABIE40_RS30840 0.74 +1.6
860,191 + ABIE40_RS30840 0.74 -0.3
860,191 + ABIE40_RS30840 0.74 -1.1
860,191 + ABIE40_RS30840 0.74 -0.2
860,191 + ABIE40_RS30840 0.74 -0.7
860,191 + ABIE40_RS30840 0.74 -0.2
860,191 + ABIE40_RS30840 0.74 +1.4
860,191 + ABIE40_RS30840 0.74 +0.4
860,192 - ABIE40_RS30840 0.74 +2.4
860,192 - ABIE40_RS30840 0.74 +1.7
860,192 - ABIE40_RS30840 0.74 +2.8
860,192 - ABIE40_RS30840 0.74 +0.4
860,192 - ABIE40_RS30840 0.74 +0.8
860,192 - ABIE40_RS30840 0.74 +1.4

Or see this region's nucleotide sequence