Experiment: R2A with 1-octen-3-ol 0.904549 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS29655 and ABIE40_RS29660 are separated by 153 nucleotides ABIE40_RS29660 and ABIE40_RS29665 are separated by 66 nucleotides ABIE40_RS29665 and ABIE40_RS29670 are separated by 282 nucleotides ABIE40_RS29670 and ABIE40_RS29675 are separated by 147 nucleotides ABIE40_RS29675 and ABIE40_RS29680 overlap by 4 nucleotides
ABIE40_RS29655: ABIE40_RS29655 - helix-turn-helix transcriptional regulator, at 628,343 to 628,756
_RS29655
ABIE40_RS29660: ABIE40_RS29660 - hypothetical protein, at 628,910 to 629,254
_RS29660
ABIE40_RS29665: ABIE40_RS29665 - IS5/IS1182 family transposase, at 629,321 to 629,462
_RS29665
ABIE40_RS29670: ABIE40_RS29670 - AraC family transcriptional regulator, at 629,745 to 629,957
_RS29670
ABIE40_RS29675: ABIE40_RS29675 - DUF1778 domain-containing protein, at 630,105 to 630,401
_RS29675
ABIE40_RS29680: ABIE40_RS29680 - GNAT family N-acetyltransferase, at 630,398 to 630,895
_RS29680
Position (kb) 629
630 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 628.754 kb on + strand at 628.787 kb on + strand at 628.787 kb on + strand at 628.787 kb on + strand at 628.788 kb on - strand at 628.956 kb on + strand, within ABIE40_RS29660 at 628.956 kb on + strand, within ABIE40_RS29660 at 628.956 kb on + strand, within ABIE40_RS29660 at 628.956 kb on + strand, within ABIE40_RS29660 at 628.956 kb on + strand, within ABIE40_RS29660 at 628.956 kb on + strand, within ABIE40_RS29660 at 628.956 kb on + strand, within ABIE40_RS29660 at 628.956 kb on + strand, within ABIE40_RS29660 at 628.957 kb on + strand, within ABIE40_RS29660 at 628.957 kb on - strand, within ABIE40_RS29660 at 628.957 kb on - strand, within ABIE40_RS29660 at 628.957 kb on - strand, within ABIE40_RS29660 at 628.957 kb on - strand, within ABIE40_RS29660 at 628.957 kb on - strand, within ABIE40_RS29660 at 628.957 kb on - strand, within ABIE40_RS29660 at 628.957 kb on - strand, within ABIE40_RS29660 at 628.957 kb on - strand, within ABIE40_RS29660 at 628.960 kb on + strand, within ABIE40_RS29660 at 628.960 kb on + strand, within ABIE40_RS29660 at 628.961 kb on - strand, within ABIE40_RS29660 at 629.079 kb on + strand, within ABIE40_RS29660 at 629.192 kb on - strand, within ABIE40_RS29660 at 629.192 kb on - strand, within ABIE40_RS29660 at 629.192 kb on - strand, within ABIE40_RS29660 at 629.192 kb on - strand, within ABIE40_RS29660 at 629.260 kb on + strand at 629.261 kb on - strand at 629.261 kb on - strand at 629.261 kb on - strand at 629.298 kb on - strand at 629.568 kb on - strand at 629.568 kb on - strand at 629.568 kb on - strand at 629.615 kb on + strand at 629.615 kb on + strand at 629.706 kb on + strand at 629.715 kb on + strand at 629.715 kb on + strand at 629.716 kb on - strand at 629.716 kb on - strand at 629.716 kb on - strand at 629.840 kb on + strand, within ABIE40_RS29670 at 629.840 kb on + strand, within ABIE40_RS29670 at 629.958 kb on + strand at 629.959 kb on - strand at 629.959 kb on - strand at 629.964 kb on + strand at 629.964 kb on + strand at 629.964 kb on + strand at 629.965 kb on - strand at 629.965 kb on - strand at 629.965 kb on - strand at 629.965 kb on - strand at 629.965 kb on - strand at 630.009 kb on + strand at 630.009 kb on + strand at 630.009 kb on + strand at 630.009 kb on + strand at 630.009 kb on + strand at 630.009 kb on + strand at 630.009 kb on + strand at 630.010 kb on - strand at 630.010 kb on - strand at 630.031 kb on + strand at 630.076 kb on + strand at 630.078 kb on + strand at 630.087 kb on - strand at 630.120 kb on - strand at 630.120 kb on - strand at 630.265 kb on + strand, within ABIE40_RS29675 at 630.307 kb on - strand, within ABIE40_RS29675 at 630.316 kb on - strand, within ABIE40_RS29675 at 630.471 kb on + strand, within ABIE40_RS29680 at 630.471 kb on + strand, within ABIE40_RS29680 at 630.563 kb on + strand, within ABIE40_RS29680 at 630.564 kb on - strand, within ABIE40_RS29680 at 630.566 kb on + strand, within ABIE40_RS29680 at 630.567 kb on - strand, within ABIE40_RS29680 at 630.567 kb on - strand, within ABIE40_RS29680 at 630.567 kb on - strand, within ABIE40_RS29680 at 630.651 kb on + strand, within ABIE40_RS29680 at 630.651 kb on + strand, within ABIE40_RS29680 at 630.680 kb on + strand, within ABIE40_RS29680 at 630.680 kb on + strand, within ABIE40_RS29680 at 630.680 kb on + strand, within ABIE40_RS29680 at 630.681 kb on - strand, within ABIE40_RS29680 at 630.681 kb on - strand, within ABIE40_RS29680 at 630.750 kb on + strand, within ABIE40_RS29680 at 630.750 kb on + strand, within ABIE40_RS29680 at 630.799 kb on + strand, within ABIE40_RS29680 at 630.806 kb on + strand, within ABIE40_RS29680 at 630.806 kb on + strand, within ABIE40_RS29680 at 630.806 kb on + strand, within ABIE40_RS29680 at 630.807 kb on - strand, within ABIE40_RS29680 at 630.900 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.904549 mM remove 628,754 + +0.3 628,787 + -0.6 628,787 + -0.6 628,787 + +2.2 628,788 - -1.6 628,956 + ABIE40_RS29660 0.13 -2.1 628,956 + ABIE40_RS29660 0.13 -1.0 628,956 + ABIE40_RS29660 0.13 -2.5 628,956 + ABIE40_RS29660 0.13 +0.2 628,956 + ABIE40_RS29660 0.13 +1.2 628,956 + ABIE40_RS29660 0.13 +0.0 628,956 + ABIE40_RS29660 0.13 -0.6 628,956 + ABIE40_RS29660 0.13 -0.1 628,957 + ABIE40_RS29660 0.14 -0.4 628,957 - ABIE40_RS29660 0.14 -0.5 628,957 - ABIE40_RS29660 0.14 -0.3 628,957 - ABIE40_RS29660 0.14 -0.6 628,957 - ABIE40_RS29660 0.14 +1.8 628,957 - ABIE40_RS29660 0.14 -0.3 628,957 - ABIE40_RS29660 0.14 -1.4 628,957 - ABIE40_RS29660 0.14 +0.6 628,957 - ABIE40_RS29660 0.14 -2.1 628,960 + ABIE40_RS29660 0.14 -0.3 628,960 + ABIE40_RS29660 0.14 +0.2 628,961 - ABIE40_RS29660 0.15 -0.4 629,079 + ABIE40_RS29660 0.49 -0.8 629,192 - ABIE40_RS29660 0.82 +1.2 629,192 - ABIE40_RS29660 0.82 -0.9 629,192 - ABIE40_RS29660 0.82 -1.1 629,192 - ABIE40_RS29660 0.82 -2.9 629,260 + -1.6 629,261 - -0.1 629,261 - +2.4 629,261 - -0.2 629,298 - +0.6 629,568 - -0.5 629,568 - -0.4 629,568 - +2.2 629,615 + -1.6 629,615 + -1.3 629,706 + -1.0 629,715 + -0.1 629,715 + -0.4 629,716 - -1.9 629,716 - -1.1 629,716 - +0.4 629,840 + ABIE40_RS29670 0.45 -1.3 629,840 + ABIE40_RS29670 0.45 -0.4 629,958 + +0.7 629,959 - +2.2 629,959 - +2.2 629,964 + +1.6 629,964 + +1.5 629,964 + +0.5 629,965 - -0.6 629,965 - -0.1 629,965 - +0.6 629,965 - +0.0 629,965 - -0.2 630,009 + -0.2 630,009 + +1.0 630,009 + +0.9 630,009 + +0.3 630,009 + -1.0 630,009 + -1.2 630,009 + -1.4 630,010 - +1.0 630,010 - +1.2 630,031 + +0.6 630,076 + -1.1 630,078 + +1.1 630,087 - +1.5 630,120 - +2.2 630,120 - -0.6 630,265 + ABIE40_RS29675 0.54 +2.2 630,307 - ABIE40_RS29675 0.68 +0.2 630,316 - ABIE40_RS29675 0.71 +2.2 630,471 + ABIE40_RS29680 0.15 -1.3 630,471 + ABIE40_RS29680 0.15 +0.9 630,563 + ABIE40_RS29680 0.33 +1.6 630,564 - ABIE40_RS29680 0.33 -0.4 630,566 + ABIE40_RS29680 0.34 +1.1 630,567 - ABIE40_RS29680 0.34 +0.2 630,567 - ABIE40_RS29680 0.34 +0.4 630,567 - ABIE40_RS29680 0.34 -2.5 630,651 + ABIE40_RS29680 0.51 -1.0 630,651 + ABIE40_RS29680 0.51 -2.4 630,680 + ABIE40_RS29680 0.57 -0.2 630,680 + ABIE40_RS29680 0.57 +1.0 630,680 + ABIE40_RS29680 0.57 -2.1 630,681 - ABIE40_RS29680 0.57 -0.4 630,681 - ABIE40_RS29680 0.57 +0.6 630,750 + ABIE40_RS29680 0.71 -0.1 630,750 + ABIE40_RS29680 0.71 -1.8 630,799 + ABIE40_RS29680 0.81 +0.2 630,806 + ABIE40_RS29680 0.82 +1.2 630,806 + ABIE40_RS29680 0.82 +2.2 630,806 + ABIE40_RS29680 0.82 -0.8 630,807 - ABIE40_RS29680 0.82 +1.2 630,900 + +1.2
Or see this region's nucleotide sequence