Experiment: R2A with 1-octen-3-ol 0.904549 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS29580 and ABIE40_RS29585 are separated by 877 nucleotides ABIE40_RS29585 and ABIE40_RS29590 are separated by 161 nucleotides
ABIE40_RS29580: ABIE40_RS29580 - ABC transporter permease, at 608,998 to 609,945
_RS29580
ABIE40_RS29585: ABIE40_RS29585 - GlxA family transcriptional regulator, at 610,823 to 611,854
_RS29585
ABIE40_RS29590: ABIE40_RS29590 - ABC transporter substrate-binding protein, at 612,016 to 613,686
_RS29590
Position (kb) 610
611
612 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 609.872 kb on + strand at 610.006 kb on + strand at 610.007 kb on - strand at 610.007 kb on - strand at 610.067 kb on - strand at 610.271 kb on - strand at 610.297 kb on + strand at 610.297 kb on + strand at 610.333 kb on + strand at 610.333 kb on + strand at 610.334 kb on - strand at 610.362 kb on - strand at 610.463 kb on + strand at 610.464 kb on - strand at 610.487 kb on + strand at 610.517 kb on + strand at 610.525 kb on + strand at 610.547 kb on + strand at 610.548 kb on - strand at 610.598 kb on + strand at 610.598 kb on + strand at 610.599 kb on - strand at 610.627 kb on + strand at 610.628 kb on - strand at 610.628 kb on - strand at 610.705 kb on + strand at 610.705 kb on + strand at 610.706 kb on - strand at 610.706 kb on - strand at 610.706 kb on - strand at 610.706 kb on - strand at 610.706 kb on - strand at 610.752 kb on + strand at 610.752 kb on + strand at 610.753 kb on - strand at 610.759 kb on - strand at 610.808 kb on + strand at 610.838 kb on + strand at 610.838 kb on + strand at 610.838 kb on + strand at 610.839 kb on - strand at 610.839 kb on - strand at 610.839 kb on - strand at 610.889 kb on + strand at 610.890 kb on - strand at 610.890 kb on - strand at 610.890 kb on - strand at 611.106 kb on - strand, within ABIE40_RS29585 at 611.117 kb on + strand, within ABIE40_RS29585 at 611.117 kb on + strand, within ABIE40_RS29585 at 611.118 kb on - strand, within ABIE40_RS29585 at 611.118 kb on - strand, within ABIE40_RS29585 at 611.153 kb on + strand, within ABIE40_RS29585 at 611.154 kb on - strand, within ABIE40_RS29585 at 611.168 kb on - strand, within ABIE40_RS29585 at 611.217 kb on + strand, within ABIE40_RS29585 at 611.367 kb on + strand, within ABIE40_RS29585 at 611.367 kb on + strand, within ABIE40_RS29585 at 611.368 kb on - strand, within ABIE40_RS29585 at 611.368 kb on - strand, within ABIE40_RS29585 at 611.368 kb on - strand, within ABIE40_RS29585 at 611.491 kb on + strand, within ABIE40_RS29585 at 611.491 kb on + strand, within ABIE40_RS29585 at 611.787 kb on + strand at 611.877 kb on - strand at 612.040 kb on - strand at 612.137 kb on - strand at 612.295 kb on + strand, within ABIE40_RS29590 at 612.295 kb on + strand, within ABIE40_RS29590 at 612.300 kb on + strand, within ABIE40_RS29590 at 612.301 kb on - strand, within ABIE40_RS29590 at 612.334 kb on + strand, within ABIE40_RS29590 at 612.335 kb on - strand, within ABIE40_RS29590 at 612.357 kb on - strand, within ABIE40_RS29590 at 612.523 kb on + strand, within ABIE40_RS29590 at 612.665 kb on - strand, within ABIE40_RS29590 at 612.665 kb on - strand, within ABIE40_RS29590 at 612.730 kb on - strand, within ABIE40_RS29590 at 612.754 kb on + strand, within ABIE40_RS29590 at 612.754 kb on + strand, within ABIE40_RS29590 at 612.755 kb on - strand, within ABIE40_RS29590 at 612.755 kb on - strand, within ABIE40_RS29590 at 612.778 kb on + strand, within ABIE40_RS29590 at 612.779 kb on - strand, within ABIE40_RS29590 at 612.822 kb on + strand, within ABIE40_RS29590 at 612.822 kb on + strand, within ABIE40_RS29590 at 612.832 kb on + strand, within ABIE40_RS29590
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.904549 mM remove 609,872 + +1.5 610,006 + +0.6 610,007 - -0.4 610,007 - -1.0 610,067 - +2.2 610,271 - +2.2 610,297 + -2.3 610,297 + -0.1 610,333 + +1.9 610,333 + -1.4 610,334 - -1.3 610,362 - +2.2 610,463 + +2.2 610,464 - +1.2 610,487 + -0.4 610,517 + +2.5 610,525 + +1.0 610,547 + +3.2 610,548 - +1.2 610,598 + +0.1 610,598 + -0.4 610,599 - +2.2 610,627 + -3.3 610,628 - +0.6 610,628 - +2.2 610,705 + +0.9 610,705 + +0.9 610,706 - +0.7 610,706 - -1.2 610,706 - +1.5 610,706 - +1.2 610,706 - -1.0 610,752 + +0.5 610,752 + +0.9 610,753 - +0.2 610,759 - -0.8 610,808 + +1.8 610,838 + -1.1 610,838 + +1.8 610,838 + +2.2 610,839 - +2.2 610,839 - -1.0 610,839 - -0.6 610,889 + +2.2 610,890 - +0.6 610,890 - +1.6 610,890 - -0.5 611,106 - ABIE40_RS29585 0.27 -0.8 611,117 + ABIE40_RS29585 0.28 -1.3 611,117 + ABIE40_RS29585 0.28 +2.2 611,118 - ABIE40_RS29585 0.29 +3.2 611,118 - ABIE40_RS29585 0.29 +0.2 611,153 + ABIE40_RS29585 0.32 -1.4 611,154 - ABIE40_RS29585 0.32 +1.1 611,168 - ABIE40_RS29585 0.33 -1.3 611,217 + ABIE40_RS29585 0.38 -1.1 611,367 + ABIE40_RS29585 0.53 -2.1 611,367 + ABIE40_RS29585 0.53 +2.2 611,368 - ABIE40_RS29585 0.53 -1.9 611,368 - ABIE40_RS29585 0.53 -2.7 611,368 - ABIE40_RS29585 0.53 -0.9 611,491 + ABIE40_RS29585 0.65 -1.0 611,491 + ABIE40_RS29585 0.65 +1.2 611,787 + -1.3 611,877 - +1.2 612,040 - +1.0 612,137 - +0.2 612,295 + ABIE40_RS29590 0.17 -0.6 612,295 + ABIE40_RS29590 0.17 -0.7 612,300 + ABIE40_RS29590 0.17 +0.9 612,301 - ABIE40_RS29590 0.17 -0.1 612,334 + ABIE40_RS29590 0.19 +0.8 612,335 - ABIE40_RS29590 0.19 +1.0 612,357 - ABIE40_RS29590 0.20 -1.3 612,523 + ABIE40_RS29590 0.30 +2.2 612,665 - ABIE40_RS29590 0.39 +2.2 612,665 - ABIE40_RS29590 0.39 -1.2 612,730 - ABIE40_RS29590 0.43 +2.2 612,754 + ABIE40_RS29590 0.44 -0.2 612,754 + ABIE40_RS29590 0.44 -1.0 612,755 - ABIE40_RS29590 0.44 +1.2 612,755 - ABIE40_RS29590 0.44 -1.5 612,778 + ABIE40_RS29590 0.46 -1.9 612,779 - ABIE40_RS29590 0.46 -2.3 612,822 + ABIE40_RS29590 0.48 -0.8 612,822 + ABIE40_RS29590 0.48 -1.6 612,832 + ABIE40_RS29590 0.49 +1.2
Or see this region's nucleotide sequence