Experiment: R2A with 1-octen-3-ol 0.904549 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS28070 and ABIE40_RS28075 are separated by 125 nucleotides ABIE40_RS28075 and ABIE40_RS28080 are separated by 539 nucleotides ABIE40_RS28080 and ABIE40_RS28085 are separated by 15 nucleotides
ABIE40_RS28070: ABIE40_RS28070 - AAA family ATPase, at 321,981 to 323,168
_RS28070
ABIE40_RS28075: ABIE40_RS28075 - methyl-accepting chemotaxis protein, at 323,294 to 324,129
_RS28075
ABIE40_RS28080: ABIE40_RS28080 - PepSY domain-containing protein, at 324,669 to 324,986
_RS28080
ABIE40_RS28085: ABIE40_RS28085 - general stress protein, at 325,002 to 325,601
_RS28085
Position (kb) 323
324
325 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 322.632 kb on + strand, within ABIE40_RS28070 at 322.632 kb on + strand, within ABIE40_RS28070 at 322.632 kb on + strand, within ABIE40_RS28070 at 322.632 kb on + strand, within ABIE40_RS28070 at 322.632 kb on + strand, within ABIE40_RS28070 at 322.633 kb on - strand, within ABIE40_RS28070 at 322.633 kb on - strand, within ABIE40_RS28070 at 322.633 kb on - strand, within ABIE40_RS28070 at 322.686 kb on + strand, within ABIE40_RS28070 at 322.688 kb on - strand, within ABIE40_RS28070 at 322.729 kb on + strand, within ABIE40_RS28070 at 322.740 kb on + strand, within ABIE40_RS28070 at 322.740 kb on + strand, within ABIE40_RS28070 at 322.741 kb on - strand, within ABIE40_RS28070 at 322.741 kb on - strand, within ABIE40_RS28070 at 323.076 kb on + strand at 323.199 kb on - strand at 323.229 kb on + strand at 323.303 kb on - strand at 323.413 kb on - strand, within ABIE40_RS28075 at 323.413 kb on - strand, within ABIE40_RS28075 at 323.599 kb on - strand, within ABIE40_RS28075 at 323.691 kb on + strand, within ABIE40_RS28075 at 323.692 kb on - strand, within ABIE40_RS28075 at 323.692 kb on - strand, within ABIE40_RS28075 at 323.692 kb on - strand, within ABIE40_RS28075 at 323.692 kb on - strand, within ABIE40_RS28075 at 323.695 kb on - strand, within ABIE40_RS28075 at 324.143 kb on + strand at 324.143 kb on + strand at 324.143 kb on + strand at 324.143 kb on + strand at 324.144 kb on - strand at 324.147 kb on + strand at 324.147 kb on + strand at 324.148 kb on - strand at 324.148 kb on - strand at 324.148 kb on - strand at 324.148 kb on - strand at 324.148 kb on - strand at 324.148 kb on - strand at 324.148 kb on - strand at 324.285 kb on - strand at 324.299 kb on + strand at 324.300 kb on - strand at 324.338 kb on - strand at 324.361 kb on - strand at 324.380 kb on + strand at 324.381 kb on - strand at 324.381 kb on - strand at 324.381 kb on - strand at 324.410 kb on + strand at 324.410 kb on + strand at 324.410 kb on + strand at 324.411 kb on - strand at 324.450 kb on + strand at 324.460 kb on - strand at 324.460 kb on - strand at 324.468 kb on + strand at 324.468 kb on + strand at 324.469 kb on - strand at 324.490 kb on - strand at 324.536 kb on + strand at 324.620 kb on + strand at 324.621 kb on - strand at 324.680 kb on + strand at 324.762 kb on - strand, within ABIE40_RS28080 at 324.762 kb on - strand, within ABIE40_RS28080 at 324.867 kb on + strand, within ABIE40_RS28080 at 324.868 kb on - strand, within ABIE40_RS28080 at 324.869 kb on + strand, within ABIE40_RS28080 at 324.869 kb on + strand, within ABIE40_RS28080 at 324.869 kb on + strand, within ABIE40_RS28080 at 324.870 kb on - strand, within ABIE40_RS28080 at 324.870 kb on - strand, within ABIE40_RS28080 at 324.961 kb on - strand at 325.012 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.904549 mM remove 322,632 + ABIE40_RS28070 0.55 +0.6 322,632 + ABIE40_RS28070 0.55 -2.0 322,632 + ABIE40_RS28070 0.55 -0.6 322,632 + ABIE40_RS28070 0.55 +2.1 322,632 + ABIE40_RS28070 0.55 +0.3 322,633 - ABIE40_RS28070 0.55 -0.9 322,633 - ABIE40_RS28070 0.55 -0.2 322,633 - ABIE40_RS28070 0.55 +1.1 322,686 + ABIE40_RS28070 0.59 +1.1 322,688 - ABIE40_RS28070 0.60 -2.1 322,729 + ABIE40_RS28070 0.63 +1.2 322,740 + ABIE40_RS28070 0.64 -1.6 322,740 + ABIE40_RS28070 0.64 -1.5 322,741 - ABIE40_RS28070 0.64 -1.7 322,741 - ABIE40_RS28070 0.64 -2.0 323,076 + +0.5 323,199 - +0.6 323,229 + -1.1 323,303 - +0.7 323,413 - ABIE40_RS28075 0.14 +0.5 323,413 - ABIE40_RS28075 0.14 -0.1 323,599 - ABIE40_RS28075 0.36 -1.7 323,691 + ABIE40_RS28075 0.47 +0.4 323,692 - ABIE40_RS28075 0.48 -2.1 323,692 - ABIE40_RS28075 0.48 -0.2 323,692 - ABIE40_RS28075 0.48 -2.5 323,692 - ABIE40_RS28075 0.48 -1.7 323,695 - ABIE40_RS28075 0.48 -2.2 324,143 + -0.3 324,143 + +1.1 324,143 + -1.7 324,143 + -1.3 324,144 - -0.2 324,147 + -2.0 324,147 + +0.5 324,148 - +1.5 324,148 - -0.5 324,148 - +0.7 324,148 - -0.6 324,148 - -2.2 324,148 - +0.2 324,148 - -0.6 324,285 - +0.1 324,299 + +1.3 324,300 - +1.5 324,338 - -0.5 324,361 - -0.3 324,380 + -2.6 324,381 - -3.0 324,381 - +1.1 324,381 - -2.4 324,410 + +2.1 324,410 + +2.1 324,410 + -0.5 324,411 - +0.5 324,450 + -1.8 324,460 - +0.1 324,460 - -0.1 324,468 + -1.6 324,468 + +1.1 324,469 - +1.1 324,490 - +2.1 324,536 + +0.7 324,620 + -2.8 324,621 - +1.7 324,680 + -0.5 324,762 - ABIE40_RS28080 0.29 -2.3 324,762 - ABIE40_RS28080 0.29 +3.1 324,867 + ABIE40_RS28080 0.62 +0.3 324,868 - ABIE40_RS28080 0.63 +0.1 324,869 + ABIE40_RS28080 0.63 +0.4 324,869 + ABIE40_RS28080 0.63 +0.4 324,869 + ABIE40_RS28080 0.63 +0.4 324,870 - ABIE40_RS28080 0.63 -0.7 324,870 - ABIE40_RS28080 0.63 +1.5 324,961 - +1.4 325,012 + -0.7
Or see this region's nucleotide sequence