Experiment: R2A with 1-octen-3-ol 0.904549 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS21125 and ABIE40_RS21130 overlap by 4 nucleotides ABIE40_RS21130 and ABIE40_RS21135 are separated by 141 nucleotides ABIE40_RS21135 and ABIE40_RS21140 are separated by 119 nucleotides
ABIE40_RS21125: ABIE40_RS21125 - beta-ketoacyl-ACP synthase, at 340,058 to 341,338
_RS21125
ABIE40_RS21130: ABIE40_RS21130 - TetR/AcrR family transcriptional regulator, at 341,335 to 341,922
_RS21130
ABIE40_RS21135: ABIE40_RS21135 - SDR family oxidoreductase, at 342,064 to 342,783
_RS21135
ABIE40_RS21140: ABIE40_RS21140 - metallophosphoesterase, at 342,903 to 344,057
_RS21140
Position (kb) 341
342 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 340.449 kb on - strand, within ABIE40_RS21125 at 340.993 kb on + strand, within ABIE40_RS21125 at 340.993 kb on + strand, within ABIE40_RS21125 at 340.993 kb on + strand, within ABIE40_RS21125 at 340.993 kb on + strand, within ABIE40_RS21125 at 340.993 kb on + strand, within ABIE40_RS21125 at 340.994 kb on - strand, within ABIE40_RS21125 at 340.994 kb on - strand, within ABIE40_RS21125 at 341.039 kb on + strand, within ABIE40_RS21125 at 341.039 kb on + strand, within ABIE40_RS21125 at 341.116 kb on + strand, within ABIE40_RS21125 at 341.117 kb on - strand, within ABIE40_RS21125 at 341.199 kb on - strand, within ABIE40_RS21125 at 341.199 kb on - strand, within ABIE40_RS21125 at 341.531 kb on + strand, within ABIE40_RS21130 at 341.531 kb on + strand, within ABIE40_RS21130 at 341.531 kb on + strand, within ABIE40_RS21130 at 341.532 kb on - strand, within ABIE40_RS21130 at 341.532 kb on - strand, within ABIE40_RS21130 at 341.535 kb on - strand, within ABIE40_RS21130 at 341.535 kb on - strand, within ABIE40_RS21130 at 341.582 kb on + strand, within ABIE40_RS21130 at 341.582 kb on + strand, within ABIE40_RS21130 at 341.582 kb on + strand, within ABIE40_RS21130 at 341.583 kb on - strand, within ABIE40_RS21130 at 341.583 kb on - strand, within ABIE40_RS21130 at 341.583 kb on - strand, within ABIE40_RS21130 at 341.583 kb on - strand, within ABIE40_RS21130 at 341.692 kb on + strand, within ABIE40_RS21130 at 341.708 kb on + strand, within ABIE40_RS21130 at 341.733 kb on - strand, within ABIE40_RS21130 at 341.733 kb on - strand, within ABIE40_RS21130 at 341.735 kb on + strand, within ABIE40_RS21130 at 341.736 kb on - strand, within ABIE40_RS21130 at 341.777 kb on + strand, within ABIE40_RS21130 at 341.777 kb on + strand, within ABIE40_RS21130 at 341.777 kb on + strand, within ABIE40_RS21130 at 341.777 kb on + strand, within ABIE40_RS21130 at 341.777 kb on + strand, within ABIE40_RS21130 at 341.783 kb on + strand, within ABIE40_RS21130 at 341.784 kb on - strand, within ABIE40_RS21130 at 341.784 kb on - strand, within ABIE40_RS21130 at 341.784 kb on - strand, within ABIE40_RS21130 at 341.784 kb on - strand, within ABIE40_RS21130 at 341.856 kb on - strand, within ABIE40_RS21130 at 341.950 kb on + strand at 341.951 kb on - strand at 341.951 kb on - strand at 341.951 kb on - strand at 341.951 kb on - strand at 341.951 kb on - strand at 341.951 kb on - strand at 341.953 kb on + strand at 341.953 kb on + strand at 341.954 kb on - strand at 342.078 kb on + strand at 342.078 kb on + strand at 342.142 kb on + strand, within ABIE40_RS21135 at 342.163 kb on + strand, within ABIE40_RS21135 at 342.163 kb on + strand, within ABIE40_RS21135 at 342.376 kb on + strand, within ABIE40_RS21135 at 342.376 kb on + strand, within ABIE40_RS21135 at 342.377 kb on - strand, within ABIE40_RS21135 at 342.377 kb on - strand, within ABIE40_RS21135 at 342.377 kb on - strand, within ABIE40_RS21135 at 342.377 kb on - strand, within ABIE40_RS21135 at 342.379 kb on + strand, within ABIE40_RS21135 at 342.380 kb on - strand, within ABIE40_RS21135 at 342.496 kb on + strand, within ABIE40_RS21135 at 342.496 kb on + strand, within ABIE40_RS21135 at 342.497 kb on - strand, within ABIE40_RS21135 at 342.497 kb on - strand, within ABIE40_RS21135 at 342.583 kb on + strand, within ABIE40_RS21135 at 342.583 kb on + strand, within ABIE40_RS21135 at 342.583 kb on + strand, within ABIE40_RS21135 at 342.584 kb on - strand, within ABIE40_RS21135 at 342.584 kb on - strand, within ABIE40_RS21135 at 342.618 kb on + strand, within ABIE40_RS21135 at 342.618 kb on + strand, within ABIE40_RS21135 at 342.635 kb on + strand, within ABIE40_RS21135 at 342.635 kb on + strand, within ABIE40_RS21135 at 342.635 kb on + strand, within ABIE40_RS21135 at 342.691 kb on + strand, within ABIE40_RS21135 at 342.691 kb on + strand, within ABIE40_RS21135 at 342.691 kb on + strand, within ABIE40_RS21135 at 342.691 kb on + strand, within ABIE40_RS21135 at 342.691 kb on + strand, within ABIE40_RS21135 at 342.691 kb on + strand, within ABIE40_RS21135 at 342.691 kb on + strand, within ABIE40_RS21135 at 342.691 kb on + strand, within ABIE40_RS21135 at 342.692 kb on - strand, within ABIE40_RS21135 at 342.692 kb on - strand, within ABIE40_RS21135 at 342.692 kb on - strand, within ABIE40_RS21135 at 342.692 kb on - strand, within ABIE40_RS21135 at 342.692 kb on - strand, within ABIE40_RS21135 at 342.692 kb on - strand, within ABIE40_RS21135 at 342.692 kb on - strand, within ABIE40_RS21135 at 342.843 kb on - strand at 342.862 kb on + strand at 342.862 kb on + strand at 342.862 kb on + strand at 342.862 kb on + strand at 342.862 kb on + strand at 342.863 kb on - strand at 342.863 kb on - strand at 342.863 kb on - strand at 342.863 kb on - strand at 342.863 kb on - strand at 342.863 kb on - strand at 342.863 kb on - strand at 342.863 kb on - strand at 342.863 kb on - strand at 342.863 kb on - strand at 342.863 kb on - strand at 342.863 kb on - strand at 342.863 kb on - strand at 342.864 kb on + strand at 342.864 kb on + strand at 342.864 kb on + strand at 342.864 kb on + strand at 342.864 kb on + strand at 342.864 kb on + strand at 342.864 kb on + strand at 342.864 kb on + strand at 342.865 kb on - strand at 342.865 kb on - strand at 342.865 kb on - strand at 342.865 kb on - strand at 342.865 kb on - strand at 342.865 kb on - strand at 342.865 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.904549 mM remove 340,449 - ABIE40_RS21125 0.31 -0.4 340,993 + ABIE40_RS21125 0.73 +0.4 340,993 + ABIE40_RS21125 0.73 -1.6 340,993 + ABIE40_RS21125 0.73 -1.5 340,993 + ABIE40_RS21125 0.73 +0.6 340,993 + ABIE40_RS21125 0.73 -0.4 340,994 - ABIE40_RS21125 0.73 +0.2 340,994 - ABIE40_RS21125 0.73 +0.2 341,039 + ABIE40_RS21125 0.77 +4.0 341,039 + ABIE40_RS21125 0.77 -0.2 341,116 + ABIE40_RS21125 0.83 +1.0 341,117 - ABIE40_RS21125 0.83 +0.3 341,199 - ABIE40_RS21125 0.89 +0.2 341,199 - ABIE40_RS21125 0.89 +1.5 341,531 + ABIE40_RS21130 0.33 +1.8 341,531 + ABIE40_RS21130 0.33 +1.8 341,531 + ABIE40_RS21130 0.33 -1.6 341,532 - ABIE40_RS21130 0.34 -2.1 341,532 - ABIE40_RS21130 0.34 -0.6 341,535 - ABIE40_RS21130 0.34 -1.3 341,535 - ABIE40_RS21130 0.34 -0.8 341,582 + ABIE40_RS21130 0.42 +0.8 341,582 + ABIE40_RS21130 0.42 -1.0 341,582 + ABIE40_RS21130 0.42 -1.6 341,583 - ABIE40_RS21130 0.42 -1.8 341,583 - ABIE40_RS21130 0.42 -0.2 341,583 - ABIE40_RS21130 0.42 -1.3 341,583 - ABIE40_RS21130 0.42 -0.8 341,692 + ABIE40_RS21130 0.61 +1.8 341,708 + ABIE40_RS21130 0.63 +0.8 341,733 - ABIE40_RS21130 0.68 -2.3 341,733 - ABIE40_RS21130 0.68 -2.3 341,735 + ABIE40_RS21130 0.68 -1.8 341,736 - ABIE40_RS21130 0.68 -1.9 341,777 + ABIE40_RS21130 0.75 +2.4 341,777 + ABIE40_RS21130 0.75 +0.8 341,777 + ABIE40_RS21130 0.75 -2.2 341,777 + ABIE40_RS21130 0.75 -3.1 341,777 + ABIE40_RS21130 0.75 -1.3 341,783 + ABIE40_RS21130 0.76 +0.8 341,784 - ABIE40_RS21130 0.76 -0.8 341,784 - ABIE40_RS21130 0.76 +0.8 341,784 - ABIE40_RS21130 0.76 -2.5 341,784 - ABIE40_RS21130 0.76 -1.9 341,856 - ABIE40_RS21130 0.89 -0.8 341,950 + +0.2 341,951 - -0.2 341,951 - +0.4 341,951 - +0.5 341,951 - -3.4 341,951 - -0.1 341,951 - -0.6 341,953 + +0.3 341,953 + +0.3 341,954 - +1.4 342,078 + +2.3 342,078 + +0.2 342,142 + ABIE40_RS21135 0.11 -0.1 342,163 + ABIE40_RS21135 0.14 +1.4 342,163 + ABIE40_RS21135 0.14 -1.1 342,376 + ABIE40_RS21135 0.43 +0.2 342,376 + ABIE40_RS21135 0.43 +0.4 342,377 - ABIE40_RS21135 0.43 +1.4 342,377 - ABIE40_RS21135 0.43 -1.0 342,377 - ABIE40_RS21135 0.43 +0.2 342,377 - ABIE40_RS21135 0.43 -0.6 342,379 + ABIE40_RS21135 0.44 -0.4 342,380 - ABIE40_RS21135 0.44 -0.9 342,496 + ABIE40_RS21135 0.60 -0.1 342,496 + ABIE40_RS21135 0.60 -0.4 342,497 - ABIE40_RS21135 0.60 -1.3 342,497 - ABIE40_RS21135 0.60 +0.4 342,583 + ABIE40_RS21135 0.72 -0.2 342,583 + ABIE40_RS21135 0.72 -0.7 342,583 + ABIE40_RS21135 0.72 +0.4 342,584 - ABIE40_RS21135 0.72 +2.2 342,584 - ABIE40_RS21135 0.72 -0.8 342,618 + ABIE40_RS21135 0.77 +0.6 342,618 + ABIE40_RS21135 0.77 +1.1 342,635 + ABIE40_RS21135 0.79 +0.9 342,635 + ABIE40_RS21135 0.79 +0.4 342,635 + ABIE40_RS21135 0.79 -0.8 342,691 + ABIE40_RS21135 0.87 -1.0 342,691 + ABIE40_RS21135 0.87 +0.1 342,691 + ABIE40_RS21135 0.87 -0.4 342,691 + ABIE40_RS21135 0.87 +0.2 342,691 + ABIE40_RS21135 0.87 -0.1 342,691 + ABIE40_RS21135 0.87 +0.4 342,691 + ABIE40_RS21135 0.87 -0.2 342,691 + ABIE40_RS21135 0.87 -0.4 342,692 - ABIE40_RS21135 0.87 -1.2 342,692 - ABIE40_RS21135 0.87 -1.5 342,692 - ABIE40_RS21135 0.87 -2.8 342,692 - ABIE40_RS21135 0.87 -0.7 342,692 - ABIE40_RS21135 0.87 +0.3 342,692 - ABIE40_RS21135 0.87 +0.4 342,692 - ABIE40_RS21135 0.87 -0.5 342,843 - +0.8 342,862 + +0.8 342,862 + +0.7 342,862 + +2.6 342,862 + -2.3 342,862 + +2.5 342,863 - +0.2 342,863 - +1.1 342,863 - +1.3 342,863 - -0.1 342,863 - +0.3 342,863 - -0.1 342,863 - +1.2 342,863 - +0.5 342,863 - -0.4 342,863 - -0.1 342,863 - +0.1 342,863 - -0.2 342,863 - +0.5 342,864 + +0.2 342,864 + -0.3 342,864 + -0.4 342,864 + +0.2 342,864 + -0.4 342,864 + +0.8 342,864 + +0.0 342,864 + -0.3 342,865 - +1.9 342,865 - +0.9 342,865 - +0.3 342,865 - +0.3 342,865 - +0.2 342,865 - +0.5 342,865 - -0.1
Or see this region's nucleotide sequence