Experiment: R2A with 1-octen-3-ol 0.904549 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS20540 and ABIE40_RS20545 are separated by 147 nucleotides ABIE40_RS20545 and ABIE40_RS20550 are separated by 79 nucleotides
ABIE40_RS20540: ABIE40_RS20540 - AraC family transcriptional regulator, at 213,394 to 214,278
_RS20540
ABIE40_RS20545: ABIE40_RS20545 - YbaK/EbsC family protein, at 214,426 to 214,884
_RS20545
ABIE40_RS20550: ABIE40_RS20550 - Tim44 domain-containing protein, at 214,964 to 215,965
_RS20550
Position (kb) 214
215 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 213.797 kb on + strand, within ABIE40_RS20540 at 213.797 kb on + strand, within ABIE40_RS20540 at 213.798 kb on - strand, within ABIE40_RS20540 at 213.918 kb on - strand, within ABIE40_RS20540 at 214.022 kb on + strand, within ABIE40_RS20540 at 214.022 kb on + strand, within ABIE40_RS20540 at 214.022 kb on + strand, within ABIE40_RS20540 at 214.023 kb on - strand, within ABIE40_RS20540 at 214.145 kb on + strand, within ABIE40_RS20540 at 214.145 kb on + strand, within ABIE40_RS20540 at 214.145 kb on + strand, within ABIE40_RS20540 at 214.146 kb on - strand, within ABIE40_RS20540 at 214.146 kb on - strand, within ABIE40_RS20540 at 214.148 kb on + strand, within ABIE40_RS20540 at 214.149 kb on - strand, within ABIE40_RS20540 at 214.149 kb on - strand, within ABIE40_RS20540 at 214.161 kb on - strand, within ABIE40_RS20540 at 214.329 kb on + strand at 214.330 kb on - strand at 214.330 kb on - strand at 214.413 kb on + strand at 214.413 kb on + strand at 214.413 kb on + strand at 214.413 kb on + strand at 214.414 kb on - strand at 214.414 kb on - strand at 214.414 kb on - strand at 214.414 kb on - strand at 214.414 kb on - strand at 214.414 kb on - strand at 214.414 kb on - strand at 214.539 kb on - strand, within ABIE40_RS20545 at 214.754 kb on - strand, within ABIE40_RS20545 at 214.882 kb on + strand at 214.882 kb on + strand at 214.882 kb on + strand at 214.882 kb on + strand at 214.883 kb on - strand at 214.920 kb on + strand at 214.920 kb on + strand at 214.920 kb on + strand at 214.920 kb on + strand at 214.921 kb on - strand at 214.921 kb on - strand at 214.921 kb on - strand at 214.921 kb on - strand at 214.921 kb on - strand at 214.921 kb on - strand at 214.922 kb on + strand at 214.922 kb on + strand at 214.922 kb on + strand at 214.922 kb on + strand at 214.922 kb on + strand at 214.923 kb on - strand at 214.923 kb on - strand at 214.923 kb on - strand at 214.923 kb on - strand at 214.925 kb on + strand at 214.925 kb on + strand at 214.925 kb on + strand at 214.925 kb on + strand at 214.926 kb on - strand at 214.926 kb on - strand at 214.926 kb on - strand at 214.926 kb on - strand at 214.926 kb on - strand at 214.953 kb on + strand at 215.039 kb on + strand at 215.040 kb on - strand at 215.414 kb on + strand, within ABIE40_RS20550 at 215.414 kb on + strand, within ABIE40_RS20550 at 215.415 kb on - strand, within ABIE40_RS20550 at 215.438 kb on + strand, within ABIE40_RS20550 at 215.507 kb on + strand, within ABIE40_RS20550 at 215.613 kb on - strand, within ABIE40_RS20550 at 215.628 kb on - strand, within ABIE40_RS20550 at 215.669 kb on + strand, within ABIE40_RS20550 at 215.670 kb on - strand, within ABIE40_RS20550 at 215.784 kb on - strand, within ABIE40_RS20550 at 215.805 kb on - strand, within ABIE40_RS20550 at 215.805 kb on - strand, within ABIE40_RS20550
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.904549 mM remove 213,797 + ABIE40_RS20540 0.46 +0.2 213,797 + ABIE40_RS20540 0.46 +0.9 213,798 - ABIE40_RS20540 0.46 -0.6 213,918 - ABIE40_RS20540 0.59 +0.6 214,022 + ABIE40_RS20540 0.71 +0.3 214,022 + ABIE40_RS20540 0.71 -2.1 214,022 + ABIE40_RS20540 0.71 +2.9 214,023 - ABIE40_RS20540 0.71 -0.6 214,145 + ABIE40_RS20540 0.85 -0.4 214,145 + ABIE40_RS20540 0.85 -0.1 214,145 + ABIE40_RS20540 0.85 -2.8 214,146 - ABIE40_RS20540 0.85 -1.2 214,146 - ABIE40_RS20540 0.85 -0.5 214,148 + ABIE40_RS20540 0.85 +2.4 214,149 - ABIE40_RS20540 0.85 +1.2 214,149 - ABIE40_RS20540 0.85 +0.4 214,161 - ABIE40_RS20540 0.87 -3.0 214,329 + +1.3 214,330 - -0.1 214,330 - -1.3 214,413 + -0.3 214,413 + -0.9 214,413 + +0.4 214,413 + -1.1 214,414 - -0.5 214,414 - +0.9 214,414 - +0.9 214,414 - -1.6 214,414 - -3.1 214,414 - -1.7 214,414 - +0.9 214,539 - ABIE40_RS20545 0.25 -1.8 214,754 - ABIE40_RS20545 0.71 +0.3 214,882 + +0.4 214,882 + -1.6 214,882 + -1.9 214,882 + +0.5 214,883 - -1.9 214,920 + -1.9 214,920 + +0.4 214,920 + -0.4 214,920 + -1.7 214,921 - -0.1 214,921 - +3.4 214,921 - -0.5 214,921 - -1.7 214,921 - -1.6 214,921 - +0.9 214,922 + +0.1 214,922 + -1.1 214,922 + -0.4 214,922 + +0.9 214,922 + -0.7 214,923 - +0.9 214,923 - -0.6 214,923 - -1.0 214,923 - -0.5 214,925 + +0.0 214,925 + -0.9 214,925 + +0.2 214,925 + -0.9 214,926 - +0.3 214,926 - -1.0 214,926 - +0.9 214,926 - +1.9 214,926 - +2.9 214,953 + -1.4 215,039 + -0.8 215,040 - +0.9 215,414 + ABIE40_RS20550 0.45 +0.5 215,414 + ABIE40_RS20550 0.45 +0.6 215,415 - ABIE40_RS20550 0.45 +0.3 215,438 + ABIE40_RS20550 0.47 +0.3 215,507 + ABIE40_RS20550 0.54 -1.9 215,613 - ABIE40_RS20550 0.65 -0.4 215,628 - ABIE40_RS20550 0.66 +1.9 215,669 + ABIE40_RS20550 0.70 +0.9 215,670 - ABIE40_RS20550 0.70 -1.1 215,784 - ABIE40_RS20550 0.82 +1.9 215,805 - ABIE40_RS20550 0.84 -1.2 215,805 - ABIE40_RS20550 0.84 -1.5
Or see this region's nucleotide sequence