Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS09500

Experiment: R2A with 1-octen-3-ol 0.904549 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS09495 and ABIE40_RS09500 overlap by 8 nucleotidesABIE40_RS09500 and ABIE40_RS09505 are separated by 144 nucleotides ABIE40_RS09495: ABIE40_RS09495 - DNA polymerase III subunit delta', at 1,833,603 to 1,834,628 _RS09495 ABIE40_RS09500: ABIE40_RS09500 - dTMP kinase, at 1,834,621 to 1,835,295 _RS09500 ABIE40_RS09505: ABIE40_RS09505 - D-alanyl-D-alanine carboxypeptidase family protein, at 1,835,440 to 1,836,636 _RS09505 Position (kb) 1834 1835 1836Strain fitness (log2 ratio) -2 -1 0 1 2at 1834.773 kb on - strand, within ABIE40_RS09500at 1835.354 kb on - strandat 1835.354 kb on - strandat 1835.354 kb on - strandat 1835.354 kb on - strandat 1835.354 kb on - strandat 1835.651 kb on + strand, within ABIE40_RS09505at 1835.651 kb on + strand, within ABIE40_RS09505at 1835.651 kb on + strand, within ABIE40_RS09505at 1835.652 kb on - strand, within ABIE40_RS09505at 1835.694 kb on + strand, within ABIE40_RS09505at 1835.696 kb on + strand, within ABIE40_RS09505at 1835.696 kb on + strand, within ABIE40_RS09505at 1835.696 kb on + strand, within ABIE40_RS09505at 1835.697 kb on - strand, within ABIE40_RS09505at 1835.697 kb on - strand, within ABIE40_RS09505at 1835.697 kb on - strand, within ABIE40_RS09505at 1835.697 kb on - strand, within ABIE40_RS09505at 1835.697 kb on - strand, within ABIE40_RS09505at 1835.750 kb on + strand, within ABIE40_RS09505at 1835.751 kb on - strand, within ABIE40_RS09505at 1835.751 kb on - strand, within ABIE40_RS09505at 1835.751 kb on - strand, within ABIE40_RS09505at 1835.927 kb on + strand, within ABIE40_RS09505at 1835.972 kb on - strand, within ABIE40_RS09505at 1835.972 kb on - strand, within ABIE40_RS09505at 1836.050 kb on + strand, within ABIE40_RS09505at 1836.050 kb on + strand, within ABIE40_RS09505at 1836.051 kb on - strand, within ABIE40_RS09505at 1836.051 kb on - strand, within ABIE40_RS09505at 1836.051 kb on - strand, within ABIE40_RS09505at 1836.051 kb on - strand, within ABIE40_RS09505at 1836.051 kb on - strand, within ABIE40_RS09505at 1836.051 kb on - strand, within ABIE40_RS09505at 1836.053 kb on + strand, within ABIE40_RS09505at 1836.053 kb on + strand, within ABIE40_RS09505at 1836.053 kb on + strand, within ABIE40_RS09505at 1836.053 kb on + strand, within ABIE40_RS09505at 1836.053 kb on + strand, within ABIE40_RS09505at 1836.053 kb on + strand, within ABIE40_RS09505at 1836.053 kb on + strand, within ABIE40_RS09505at 1836.053 kb on + strand, within ABIE40_RS09505at 1836.054 kb on - strand, within ABIE40_RS09505at 1836.054 kb on - strand, within ABIE40_RS09505at 1836.054 kb on - strand, within ABIE40_RS09505at 1836.062 kb on + strand, within ABIE40_RS09505at 1836.063 kb on - strand, within ABIE40_RS09505at 1836.096 kb on + strand, within ABIE40_RS09505at 1836.096 kb on + strand, within ABIE40_RS09505at 1836.096 kb on + strand, within ABIE40_RS09505at 1836.097 kb on - strand, within ABIE40_RS09505

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 1-octen-3-ol 0.904549 mM
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1,834,773 - ABIE40_RS09500 0.23 -1.4
1,835,354 - +0.4
1,835,354 - +0.3
1,835,354 - +1.3
1,835,354 - -2.0
1,835,354 - +0.5
1,835,651 + ABIE40_RS09505 0.18 +0.6
1,835,651 + ABIE40_RS09505 0.18 +0.1
1,835,651 + ABIE40_RS09505 0.18 +0.7
1,835,652 - ABIE40_RS09505 0.18 +1.1
1,835,694 + ABIE40_RS09505 0.21 -0.2
1,835,696 + ABIE40_RS09505 0.21 +1.4
1,835,696 + ABIE40_RS09505 0.21 +0.1
1,835,696 + ABIE40_RS09505 0.21 +0.3
1,835,697 - ABIE40_RS09505 0.21 +0.6
1,835,697 - ABIE40_RS09505 0.21 +1.4
1,835,697 - ABIE40_RS09505 0.21 +0.8
1,835,697 - ABIE40_RS09505 0.21 -0.8
1,835,697 - ABIE40_RS09505 0.21 +1.4
1,835,750 + ABIE40_RS09505 0.26 +1.3
1,835,751 - ABIE40_RS09505 0.26 +0.7
1,835,751 - ABIE40_RS09505 0.26 -1.5
1,835,751 - ABIE40_RS09505 0.26 -1.8
1,835,927 + ABIE40_RS09505 0.41 +0.7
1,835,972 - ABIE40_RS09505 0.44 -0.2
1,835,972 - ABIE40_RS09505 0.44 +0.4
1,836,050 + ABIE40_RS09505 0.51 +0.3
1,836,050 + ABIE40_RS09505 0.51 +0.5
1,836,051 - ABIE40_RS09505 0.51 +0.5
1,836,051 - ABIE40_RS09505 0.51 +0.5
1,836,051 - ABIE40_RS09505 0.51 -1.0
1,836,051 - ABIE40_RS09505 0.51 +1.0
1,836,051 - ABIE40_RS09505 0.51 -0.2
1,836,051 - ABIE40_RS09505 0.51 +0.2
1,836,053 + ABIE40_RS09505 0.51 -0.3
1,836,053 + ABIE40_RS09505 0.51 +0.6
1,836,053 + ABIE40_RS09505 0.51 -0.1
1,836,053 + ABIE40_RS09505 0.51 -1.2
1,836,053 + ABIE40_RS09505 0.51 +0.6
1,836,053 + ABIE40_RS09505 0.51 +1.1
1,836,053 + ABIE40_RS09505 0.51 +0.7
1,836,053 + ABIE40_RS09505 0.51 +0.2
1,836,054 - ABIE40_RS09505 0.51 -0.1
1,836,054 - ABIE40_RS09505 0.51 -0.7
1,836,054 - ABIE40_RS09505 0.51 +0.8
1,836,062 + ABIE40_RS09505 0.52 +0.5
1,836,063 - ABIE40_RS09505 0.52 -0.9
1,836,096 + ABIE40_RS09505 0.55 +0.7
1,836,096 + ABIE40_RS09505 0.55 -1.1
1,836,096 + ABIE40_RS09505 0.55 +1.8
1,836,097 - ABIE40_RS09505 0.55 +0.9

Or see this region's nucleotide sequence